Application of microbial hot spots enhances pesticide degradation in soils

A survey of multiple pesticide residues in pollen and beebread collected in China

Honeybees, as major pollinators, make vital contributions to humans and ecosystems. Worryingly, a phenomenon known as honeybee colony losses has been reported in recent years. One of the factors underlying the occurrence of honeybee colony losses is exposure of honey bees to pesticide residues in their food, which cause detrimental sublethal effects and may lead to the collapse of their colonies. In this paper, 189 pollen samples and 226 beebread samples collected from five major beekeeping areas in China were analyzed from spring 2016 to autumn 2017. The most common active ingredient residues found include the insecticides (imidacloprid, thiamethoxam, fenpropathrin, bifenthrin and chlorpyrifos), the acaricides (coumaphos and fluvalinate) and the fungicides (carbendazim and triadimefon). Our data shows that the residual level of three chemicals (i.e. imidacloprid, thiamethoxam and chlorpyrifos) was higher in pollen than in beebread. Moreover, contamination of pollen and beebread was most serious in spring and in the middle and lower reaches of the Yellow River Area of China. Our data lay the foundation for the risk assessment of pesticides on honeybees in China.

Inoculation of soil with an Isoproturon degrading microbial community reduced the pool of "real non-extractable" Isoproturon residues

During pesticides degradation, biogenic non-extractable residues ("apparent NER") may not share the same environmental fate and risks with the "real NER" that are bound to soil matrix. It is not clear how microbial community (MC) inoculation for pesticides degradation would influence the NER composition. To investigate degradation efficiency of pesticides Isoproturon (IPU) and NER composition following MC inoculation, clay particles harboring MC that contains the IPU degrading strain, Sphingomonas sp., were inoculated into soil receiving ¹⁴C-labeled IPU addition. Mineralization of IPU was greatly enhanced with MC inoculation that averagely 55.9% of the applied ¹⁴C-IPU was consumed up into ¹⁴CO₂ during 46 days soil incubation. Isoproturon degradation was more thorough with MC than that in the control: much less amount of metabolic products (4.6% of applied IPU) and NER (35.4%) formed in MC treatment, while the percentages were respectively 30.3% for metabolites and 49.8% for NER in the control. Composition of NER shifted with MC inoculation, that relatively larger amount of IPU was incorporated into the biogenic "apparent NER" in comparison with "real NER". Besides its well-recognized role on enhancing mineralization, MC inoculation with clay particles benefits soil pesticides remediation in term of reducing "real NER" formation, which has been previously underestimated.

N-acyl-homoserine lactone dynamics during biofilm formation of a 1,2,4-trichlorobenzene mineralizing community on clay

In Gram-negative bacteria, quorum sensing systems are based on the N-acyl-homoserine lactone (AHL) molecule. The objective of this study was to investigate the role of quorum sensing systems during biofilm formation by a microbial community while degrading the pollutant. Our model system included 1,2,4-trichlorobenzene (1,2,4-TCB) and its mineralizing Gram-negative bacterial community to investigate the relationships between AHL dynamics, cell growth and pollutant degradation. Biomineralization of 1,2,4-TCB was monitored for both the planktonic bacterial community with and without sterile clay particles in liquid cultures. The bacterial growth and production of AHLs were quantified by fluorescent in situ hybridization and immunoassay analysis, respectively. A rapid production of AHLs which occurred coincided with the biofilm formation and the increase of mineralization rate of 1,2,4-TCB in liquid cultures. There is a positive correlation between the cell density of Bodertella on the clay particles and mineralization rate of 1,2,4-TCB. 3-oxo-C_12:1-HSL appears to be the dominant AHL with the highest intensity and rapidly degraded by the bacterial community via two main consecutive reactions (lactone hydrolysis and decarboxylic reaction). These findings suggest that the integrated AHLs and their degraded products play a crucial role in biofilm formation and biomineralization of 1,2,4-TCB in culture.

Removal of pesticides and ecotoxicological changes during the simultaneous treatment of triazines and chlorpyrifos in biomixtures

Biopurification systems constitute a biological approach for the treatment of pesticide-containing wastewaters produced in agricultural activities, and contain an active core called biomixture. This work evaluated the performance of a biomixture to remove and detoxify a combination of three triazine herbicides (atrazine/terbuthylazine/terbutryn) and one insecticide (chlorpyrifos), and this efficiency was compared with dissipation in soil alone. The potential enhancement of the process was also assayed by bioaugmentation with the ligninolytic fungi Trametes versicolor. Globally, the non-bioaugmented biomixture exhibited faster pesticide removal than soil, but only in the first stages of the treatment. After 20 d, the largest pesticide removal was achieved in the biomixture, while significant removal was detected only for chlorpyrifos in soil. However, after 60 d the removal values in soil matched those achieved in the biomixture for all the pesticides. The bioaugmentation failed to enhance, and even significantly decreased the biomixture removal capacity. Final removal values were 82.8% (non-bioaugmented biomixture), 43.8% (fungal bioaugmented biomixture), and 84.7% (soil). The ecotoxicological analysis revealed rapid detoxification (from 100 to 170 TU to <1 TU in 20 d) towards Daphnia magna in the biomixture and soil, and slower in the bioaugmented biomixture, coinciding with pesticide removal. On the contrary, despite important herbicide elimination, no clear detoxification patterns were observed in the phytotoxicity towards Lactuca sativa. Findings suggest that the proposed biomixture is useful for fast removal of the target pesticides; even though soil also removes the agrochemicals, longer periods would be required. On the other hand, the use of fungal bioaugmentation is discouraged in this matrix.

Fate Characterization of Benzene Kresoxim-Methyl (a Strobilurin Fungicide) in Different Aerobic Soils

Benzene kresoxim-methyl (BKM) is a promising broad-spectrum strobilurin fungicide widely used to control fungal pathogens in crops. However, information on its environmental fate is limited. To broaden our understanding of this fungicide's kinetic fate in aerobic soils, we labeled BKM with C on its benzoate ring and used ultralow-level liquid scintillation counting coupled with high-performance liquid chromatography analysis. Results show that degradation, mineralization, and bound residue (BR) formation of BKM was controlled by soil type and microbial community composition. Degradation of BKM followed first-order dynamics, and the half-lives () were 51.7, 30.8, and 26.8 d for clay, loamy, and saline soils, respectively. After 100 d, about 0.13, 4.35, and 5.94% of the initial C-BKM was mineralized, and 14.43, 19.90, and 28.81% was formed as BRs in the clay, loamy, and saline soils, respectively. About 60 to 85% of the C-BKM residue in soil was extractable; of this fraction, 30 to 50% was composed of incomplete degradation intermediates. Up to 40% of extractable C-BKM in soil was readily available. Our results suggest that BKM and its incomplete intermediates had a relatively long persistence in soil, which may lead to exposure for nontarget organisms. Soil microbes may play a dominant role in controlling the fate of BKM in soil as sterilization sharply decreased its mineralization rate from 4.35 to 0.03%, increased from 30.8 to 85.6 d, and decreased the BR fraction from 19.90 to 3.25%.

Bioaugmentation as a strategy for the remediation of pesticide-polluted soil: A review

Bioaugmentation, a green technology, is defined as the improvement of the degradative capacity of contaminated areas by introducing specific microorganisms, has emerged as the most advantageous method for cleaning-up soil contaminated with pesticides. The present review discusses the selection of pesticide-utilising microorganisms from various sources, their potential for the degradation of pesticides from different chemical classes in liquid media as well as soil-related case studies in a laboratory, a greenhouse and field conditions. The paper is focused on the microbial degradation of the most common pesticides that have been used for many years such as organochlorinated and organophosphorus pesticides, triazines, pyrethroids, carbamate, chloroacetamide, benzimidazole and derivatives of phenoxyacetic acid. Special attention is paid to bacterial strains from the genera Alcaligenes, Arthrobacter, Bacillus, Brucella, Burkholderia, Catellibacterium, Pichia, Pseudomonas, Rhodococcus, Serratia, Sphingomonas, Stenotrophomonas, Streptomyces and Verticillum, which have potential applications in the bioremediation of pesticide-contaminated soils using bioaugmentation technology. Since many factors strongly influence the success of bioaugmentation, selected abiotic and biotic factors such as pH, temperature, type of soil, pesticide concentration, content of water and organic matter, additional carbon and nitrogen sources, inoculum size, interactions between the introduced strains and autochthonous microorganisms as well as the survival of inoculants were presented.

Enhanced degradation of isoproturon in an agricultural soil by a Sphingomonas sp. strain and a microbial consortium

Isoproturon (IPU) degradation in an agricultural soil inoculated with an isolated IPU-degrader strain (Sphingomonas sp. strain AK1, IS) or a microbial consortium (MC) harboring this strain, with or without carrier material, were investigated in soil microcosm experiments during 46 days. Effect of the carrier material and inoculation size on IPU-degradation efficacy of the inoculants were studied. Mineralization, extractable residues and non-extractable residues of ¹⁴C-labeled IPU were analyzed. The low IPU mineralization in untreated soil (7.0%) was enhanced to different extents by inoculation of IS (17.4%-46.0%) or MC (58.9%-67.5%). Concentrations of IPU residues in soils amended with MC (0.002-0.095 μg g dry soil^-1) were significantly lower than in soils amended with IS (0.02-0.67 μg g dry soil^-1) and approximately 10 times lower than in the uninoculated soil (0.06-0.80 μg g dry soil^-1). Less extractable residues and non-extractable residues were detected in soil with higher IPU mineralization. Inoculation size (as indicated by the volume of liquid cultures or by the number of carrier particles) determined the IPU-removal efficacy of IS in soil, but this effect was less pronounced for MC. The low sorption of IPU to soil and the decreasing IPU-mineralizing rates suggested incapability of IS to establish the IPU-mineralizing function in the soil. The thorough removal of IPU and persistent IPU-mineralizing activity of soil inoculated with MC indicated a high persistence of IPU-metabolic trait. Our results showed that microbial consortia might be more efficient than single degrader strains to enhance clean-up of organic chemicals in soil.

Degradation and enantiomeric fractionation of mecoprop in soil previously exposed to phenoxy acid herbicides - New insights for bioremediation

Phenoxy acid-contaminated subsoils are common as a result of irregular disposal of residues and production wastes in the past. For enhancing in situ biodegradation at reducing conditions, biostimulation may be an effective option. Some phenoxy acids were marketed in racemic mixtures, and biodegradation rates may differ between enantiomers. Therefore, enantio-preferred degradation of mecoprop (MCPP) in soil was measured to get in-depth information on whether amendment with glucose (BOD equivalents as substrate for microbial growth) and nitrate (redox equivalents for oxidation) can stimulate bioremediation. The degradation processes were studied in soil sampled at different depths (3, 4.5 and 6m) at a Danish urban site with a history of phenoxy acid contamination. We observed preferential degradation of the R-enantiomer only under aerobic conditions in the soil samples from 3- and 6-m depth at environmentally relevant (nM) MCPP concentrations: enantiomer fraction (EF)<0.5. On the other hand, we observed preferential degradation of the S-enantiomer in all samples and treatments at elevated (μM) MCPP concentrations: EF>0.5. Three different microbial communities were discriminated by enantioselective degradation of MCPP: 1) aerobic microorganisms with little enantioselectivity, 2) aerobic microorganisms with R-selectivity and 3) anaerobic denitrifying organisms with S-selectivity. Glucose-amendment did not enhance MCPP degradation, while nitrate amendment enhanced the degradation of high concentrations of the herbicide.

Predicting isoproturon long-term mineralization from short-term experiment: Can this be a suitable approach?

A worldwide used pesticide - isoproturon (IPU) - was selected to test whether short-term experiments can be used to predict long-term mineralization of IPU in soil. IPU-mineralization was measured for 39 and 265 days in four different agricultural soils with a low mineralization dynamic. Additionally, in one soil IPU dissipation, formation and dissipation of metabolites, formation of non-extractable residues (NER) and (14)C-microbial biomass from (14)C-IPU were monitored for 39 and 265 days. The data from short-term and long-term experiments were used for model fitting. The long-term dynamics of IPU mineralization were considerably overestimated by the short-term experiments in two soils with neutral pH, while in two other soils with low pH and lower mineralization, the long-term mineralization of IPU could be sufficiently predicted. Additional investigations in one of the soils with neutral pH showed that dissipation of IPU and metabolites could be correctly predicted by the short-term experiment. However, the formation of NER and (14)C-microbial biomass were remarkably overestimated by the short-term experiment. Further, it could be shown that the released NER and (14)C-microbial biomass were the main contributors of (14)CO2 formation at later incubation stages. Taken together, our results indicate that in soils with neutral pH short-term experiments were inadequate to predict the long-term mineralization of IPU.

Degradation of three benzonitrile herbicides by Aminobacter MSH1 versus soil microbial communities: pathways and kinetics

BACKGROUND

The herbicide dichlobenil was banned in the European Union after its metabolite 2,6-dichlorobenzamide (BAM) was encountered in groundwater. Owing to structural similarities, bromoxynil and ioxynil might be converted to persistent metabolites in a similar manner. To examine this, we used an indigenous soil bacterium Aminobacter sp. MSH1 which is capable of mineralizing dichlobenil via BAM and 2,6-dichlorobenzoic acid (2,6-DCBA).

RESULTS

Strain MSH1 converted bromoxynil and ioxynil to the corresponding aromatic metabolites, 3,5-dibromo-4-hydroxybenzoic acid (BrAC) and 3,5-diiodo-4-hydroxybenzoic acid (IAC) following Michaelis-Menten kinetics (adjusted R(2) between 0.907 and 0.999). However, in contrast to 2,6-DCBA, degradation of these metabolites was not detected in the pure-culture studies, suggesting that they might pose an environmental risk if similar partial degradation occurred in soil. By contrast, experiments with natural soils indicated 20-30% mineralization of ioxynil and bromoxynil within the first week.

CONCLUSION

The degradation pathway of the three benzonitriles is initially driven by similar enzymes, after which more specific enzymes are responsible for further degradation. Ioxynil and bromoxynil mineralization in soil is not dependent on previous benzonitrile exposure. The accumulation of dead-end metabolites, as seen for dichlobenil, is not a major problem.

Soil remediation with a microbial community established on a carrier: strong hints for microbial communication during 1,2,4-Trichlorobenzene degradation

The objective of the present study was to get more insight into the mechanisms that govern the high mineralization potential of a microbial community attached on a carrier material, as we found in an earlier study (Wang et al., 2010). A 1,2,4-Trichlorobenzene (1,2,4-TCB) degrading microbial community - attached (MCCP) and non-attached (MCLM) on clay particles - was inoculated into a simplified mineral medium system. Signaling molecules (AHLs), cell growth and 1,2,4-TCB mineralization were measured at different sampling points. The production of AHLs in the MCCP system increased continuously with increasing key degrader (Bordetella sp.) cell growth and a positive correlation was observed between the production of AHLs and 1,2,4-TCB mineralization. In the MCLM system, however, 1,2,4-TCB mineralization was lower than in the MCCP system; the AHLs production per Bordetella cell was higher than in MCCP and there was no correlation between AHLs and mineralization. Moreover, in the MCCP system less different AHLs were produced than in the MCLM system. These results indicate that a microbial community attached on a carrier material has an advantage over a non-attached community: it produces signaling molecules with much less energy and effort to achieve a well-directed cell-to-cell communication resulting in a high and effective mineralization.

Impact of soil matric potential on the fine-scale spatial distribution and activity of specific microbial degrader communities

The impact of the soil matric potential on the relationship between the relative abundance of degraders and their activity and on the spatial distribution of both at fine scales was determined to understand the role of environmental conditions in the degradation of organic substrates. The mineralization of (13) C-glucose and (13) C-2,4-dichlorophenoxyacetic acid (2,4-D) was measured at different matric potentials (-0.001, -0.01 and -0.316 MPa) in 6 × 6 × 6 mm(3) cubes excised from soil cores. At the end of the incubation, total bacterial and 2,4-D degrader abundances were determined by quantifying the 16S rRNA and the tfdA genes, respectively. The mineralization of 2,4-D was more sensitive to changes in matric potential than was that of glucose. The amount and spatial structure of 2,4-D mineralization decreased with matric potential, whilst the spatial variability increased. On the other hand, the spatial variation of glucose mineralization was less affected by changes in matric potential. The relationship between the relative abundance of 2,4-D degraders and 2,4-D mineralization was significantly affected by matric potential: the relative abundance of tfdA needed to be higher to reach a given level of 2,4-D mineralization in dryer than in moister conditions. The data show how microbial interactions with their microhabitat can have an impact on soil processes at larger scales.

Single application of sewage sludge--impact on the quality of an alluvial agricultural soil

The effects of sewage sludge on soil quality with regard to its nutrient and heavy metal content, microbial community structure and ability to maintain specific soil function (degradation of herbicide glyphosate) were investigated in a three months study using an alluvial soil (Eutric Fluvisol). Dehydrated sewage sludge significantly increased soil organic matter (up to 20.6% of initial content), total and available forms of N (up to 33% and 220% of initial amount, respectively), as well as total and plant available forms of P (up to 11% and 170% of initial amount, respectively) and K (up to 70% and 47% of initial amount, respectively) in the upper 2 cm soil layer. The increase of organic matter was most prominent 3d after the application of sewage sludge, after 3 months it was no longer significant. Contents of nutrients kept to be significantly higher in the sewage sludge treated soil till the end of experiment. Contents of some heavy metals (Zn, Cu, Pb) increased as well. The highest increase was found for Zn (up to 53% of initial amount), however it was strongly bound to soil particles and its total content was kept below the maximum permissible limit for agricultural soil. Based on molecular fingerprinting of bacterial 16S rRNA gene and fungal ITS fragment on 3rd day and 3rd month after sewage sludge amendment, significant short term effects on bacterial and fungal communities were shown due to the sewage sludge. The effects were more pronounced and more long-term for bacterial than fungal communities. The mineralization of (14)C-glyphosate in the sewage sludge soil was 55.6% higher than in the control which can be linked to (i) a higher glyphosate bioavailability in sewage sludge soil, which was triggered by the pre-sorption of phosphate originating from the sewage sludge and/or (ii) beneficial alterations of the sewage sludge to the physical-chemical characteristics of the soil.

Evaluation of bioaugmentation with entrapped degrading cells as a soil remediation technology

Soil augmentation with microbial degraders immobilized on carriers is evaluated as a potential remediation technology using a mathematical model that includes degradation within spatially distributed carriers and diffusion or advection-dispersion as contaminant mass transfer mechanisms. The total volume of carriers is a critical parameter affecting biodegradation performance. In the absence of advection, 320 and 20 000 days are required to mineralize 90% of the herbicide linuron by Variovorax sp. SRS16 encapsulated in 2 mm beads with 5 and 20 mm spacings, respectively. Given that many pesticide degraders have low intrinsic degradation rates and that only limited carrier to soil volume ratios are practically feasible, bioaugmented soils are characterized by low effective degradation rates and can be considered fully mixed. A simple exponential model is then sufficient to predict biodegradation as verified by comparisons with published experimental data. By contrast, the full spatially distributed model is needed to adequately model the degradation of faster degrading contaminants such as naphthalene and benzene which can be mass-transfer limited. Dimensionless Damköhler numbers are proposed to determine whether the spatially distributed model is required. Results show that field scale applications of immobilized degraders will be limited by the amount of carriers required to reach acceptable degradation rates.

Biodegradation in a partially saturated sand matrix: compounding effects of water content, bacterial spatial distribution, and motility

Bacterial pesticide degraders are generally heterogeneously distributed in soils, leaving soil volumes devoid of degradation potential. This is expected to have an impact on degradation rates because the degradation of pollutant molecules in such zones will be contingent either on degraders colonizing these zones or on pollutant mass transfer to neighboring zones containing degraders. In a model system, we quantified the role exerted by water on mineralization rate in the context of a heterogeneously distributed degradation potential. Alginate beads colonized by Pseudomonas putida KT2440 were inserted at prescribed locations in sand microcosms so that the initial spatial distribution of the mineralization potential was controlled. The mineralization rate was strongly affected by the matric potential (decreasing rate with decreasing matric potential) and by the initial distribution of the degraders (more aggregated distributions being associated with lower rates). The mineralization was diffusion-limited, as confirmed with a mathematical model. In wet conditions, extensive cell dispersal was observed for the flagellated wild type and, albeit to a lesser extent, for a nonflagellated mutant, partially relieving the diffusion limitation. Dry conditions, however, sustained low mineralization rates through the combined effects of low pollutant diffusivity and limited degrader dispersal.

Atrazine and terbuthylazine mineralization by an Arthrobacter sp. isolated from a sugarcane-cultivated soil in Kenya

A tropical soil from a Kenyan sugarcane-cultivated field showed a very high capability to mineralize (14)C-ring-labeled atrazine. In laboratory experiments this soil mineralized about 90% of the applied atrazine within 98 d. The atrazine-degrading microbial community was enriched in liquid cultures containing atrazine as the sole N source and 100 mgL(-1) glucose as additional C source. From the enrichment culture a bacterial strain was isolated and identified by comparative sequence analysis of the 16S-rDNA as member of the genus Arthrobacter. The enriched mixed culture as well as the isolated strain, designated as Arthrobacter sp. strain GZK-1, could grow on atrazine and terbuthylazine as sole N-sources; Arthrobacter sp. GZK-1 mineralized (14)C-ring-labeled atrazine up to 88% to (14)CO(2) and (14)C-ring-labeled terbuthylazine up to 65% to (14)CO(2) in a liquid culture within 14 d. The enriched microbial consortium as well as the isolated strain could be a potential solution for the remediation of s-triazine polluted agricultural soils.

In situ mass distribution quotient (iMDQ) - a new factor to compare bioavailability of chemicals in soils?

Aim of this work was the development of a new non-biological factor to determine microbial in situ bioavailability of chemicals in soils. Pesticide residues were extracted from ten highly different agricultural soils that had been incubated with the (14)C-herbicide isoproturon (IPU) under comparable soil conditions (water tension - 15 kPa; soil density 1.3 g cm(-3)). Two different pesticide extraction approaches were compared: (i) (14)C-pesticide residues were measured in the pore water (PW) which was extracted from soil by centrifugation; (ii) (14)C-pesticide residues were extracted from soil samples with an excess of water (EEW). We introduce the pesticide's in situ mass distribution quotient (iMDQ) as a measure for pesticide bioavailability, which is calculated as a quotient of adsorbed and dissolved chemical amounts for both approaches (iMDQ(PW), iMDQ(EEW)). Pesticide mineralization in soils served as a reference for real microbial availability. A highly significant correlation between iMDQ(PW) and mineralization showed that PW extraction is adequate to assess IPU bioavailability. In contrast, no correlation exists between IPU mineralization and its extractability from soil with EEW. Therefore, it can be concluded that soil equilibration at comparable conditions and subsequent PW extraction is vital for a isoproturon bioavailability ranking of soils.