Impact of dry-wet and freeze-thaw events on pesticide mineralizing populations and their activity in wetland ecosystems: A microcosm study

Effects of biochar and compost on microbial community assembly and metabolic processes in glyphosate, imidacloprid and pyraclostrobin polluted soil under freezethaw cycles

Biochar and organic compost are widely used in agricultural soil remediation as soil immobilization agents. However, the effects of biochar and compost on microbial community assembly processes in polluted soil under freezingthawing need to be further clarified. Therefore, a freezethaw cycle experiment was conducted with glyphosate (herbicide), imidacloprid (insecticide) and pyraclostrobin (fungicide) polluted to understand the effect of biochar and compost on microbial community assembly and metabolic behavior. We found that biochar and compost could significantly promote the degradation of glyphosate, imidacloprid and pyraclostrobin in freezethaw soil decrease the half-life of the three pesticides. The addition of immobilization agents improved soil bacterial and fungal communities and promoted the transformation from homogeneous dispersal to homogeneous selection. For soil metabolism, the combined addition of biochar and compost alleviated the pollution of glyphosate, imidacloprid and imidacloprid to soil through up-regulation of metabolites (DEMs) in amino acid metabolism pathway and down-regulation of DEMs in fatty acid metabolism pathway. The structural equation modeling (SEM) results showed that soil pH and DOC were the main driving factors affecting microbial community assembly and metabolites. In summary, the combined addition of biochar and compost reduced the adverse effects of pesticides residues.

Impact of polyamide microplastics on riparian sediment structures and Cd(II) adsorption: A comparison of natural exposure, dry-wet cycles, and freeze-thaw cycles

Microplastics (MPs) accumulation in sediments has posed a huge threat to freshwater ecosystems. However, it is still unclear the effect of MPs on riparian sediment structures and contaminant adsorption under different hydrological processes. In this study, three concentrations of polyamide (PA) MPs-treated sediments (0.1%, 1%, and 10%, w/w) were subjected to natural (NA) exposure, dry-wet (DW) cycles, and freeze-thaw (FT) cycles. The results indicated that PA MPs-added sediment increased the micro-aggregates by 10.1%-18.6% after FT cycles, leading to a decrease in aggregate stability. The pH, OM, and DOC of sediments were significantly increased in DW and FT treatments. In addition, the increasing concentration of PA MPs showed an obvious decrease in aromaticity, humification, and molecular weight of sediment DOM in FT treatments. Also, high level of MPs was more likely to inhibit the formation of humic-like substances and tryptophan-like proteins. For DW and FT cycles, 0.1% and 1% PA MPs-treated sediments slightly increased the adsorption capacity of Cd(II), which may be ascribed to the aging of MPs. Further correlation analysis found that DW and FT altered the link between DOM indicators, and aggregate stability was directly related to the changes in sediment organic carbon. Our findings revealed the ecological risk of MPs accumulating in riparian sediments under typical hydrological processes.

Interspecies Interactions of the 2,6-Dichlorobenzamide Degrading Aminobacter sp. MSH1 with Resident Sand Filter Bacteria: Indications for Mutual Cooperative Interactions That Improve BAM Mineralization Activity

Bioaugmentation often involves an invasion process requiring the establishment and activity of a foreign microbe in the resident community of the target environment. Interactions with resident micro-organisms, either antagonistic or cooperative, are believed to impact invasion. However, few studies have examined the variability of interactions between an invader and resident species of its target environment, and none of them considered a bioremediation context. Aminobacter sp. MSH1 mineralizing the groundwater micropollutant 2,6-dichlorobenzamide (BAM), is proposed for bioaugmentation of sand filters used in drinking water production to avert BAM contamination. We examined the nature of the interactions between MSH1 and 13 sand filter resident bacteria in dual and triple species assemblies in sand microcosms. The residents affected MSH1-mediated BAM mineralization without always impacting MSH1 cell densities, indicating effects on cell physiology rather than on cell number. Exploitative competition explained most of the effects (70%), but indications of interference competition were also found. Two residents improved BAM mineralization in dual species assemblies, apparently in a mutual cooperation, and overruled negative effects by others in triple species systems. The results suggest that sand filter communities contain species that increase MSH1 fitness. This opens doors for assisting bioaugmentation through co-inoculation with "helper" bacteria originating from and adapted to the target environment.

A Literature Review of Wetland Treatment Systems Used to Treat Runoff Mixtures Containing Antibiotics and Pesticides from Urban and Agricultural Landscapes

Wetland treatment systems are used extensively across the world to mitigate surface runoff. While wetland treatment for nitrogen mitigation has been comprehensively reviewed, the implications of common-use pesticides and antibiotics on nitrogen reduction remain relatively unreviewed. Therefore, this review seeks to comprehensively assess the removal of commonly used pesticides and antibiotics and their implications for nitrogen removal in wetland treatment systems receiving non-point source runoff from urban and agricultural landscapes. A total of 181 primary studies were identified spanning 37 countries. Most of the reviewed publications studied pesticides (n = 153) entering wetlands systems, while antibiotics (n = 29) had fewer publications. Even fewer publications reviewed the impact of influent mixtures on nitrogen removal processes in wetlands (n = 16). Removal efficiencies for antibiotics (35–100%), pesticides (−619–100%), and nitrate-nitrogen (−113–100%) varied widely across the studies, with pesticides and antibiotics impacting microbial communities, the presence and type of vegetation, timing, and hydrology in wetland ecosystems. However, implications for the nitrogen cycle were dependent on the specific emerging contaminant present. A significant knowledge gap remains in how wetland treatment systems are used to treat non-point source mixtures that contain nutrients, pesticides, and antibiotics, resulting in an unknown regarding nitrogen removal efficiency as runoff contaminant mixtures evolve.

Plant litter enhances degradation of the herbicide MCPA and increases formation of biogenic non-extractable residues in soil

Amendment of soils with plant residues is common practice for improving soil quality. In addition to stimulated microbial activity, the supply of fresh soluble organic (C) from litter may accelerate the microbial degradation of chemicals in soils. Therefore, the aim of this study was to test whether the maize litter enhances degradation of 4-chloro-2-methylphenoxyacetic acid (MCPA) and increases formation of non-toxic biogenic non-extractable residues (bioNERs). Soil was amended with ¹³C₆-MCPA and incubated with or without litter addition on the top. Three soil layers were sampled with increasing distance from the top: 0-2 mm, 2-5 mm and 5-20 mm; and the mass balance of ¹³C₆-MCPA transformation determined. Maize litter promoted microbial activity, mineralization of ¹³C₆-MCPA and bioNER formation in the upper two layers (0-2 and 2-5 mm). The mineralization of ¹³C₆-MCPA in soil with litter increased to 27% compared to only 6% in the control. Accordingly, maize addition reduced the amount of extractable residual MCPA in soil from 77% (control) to 35% of initially applied ¹³C₆-MCPA. While non-extractable residues (NERs) were <6% in control soil, litter addition raised NERs to 21%. Thereby, bioNERs comprised 14% of ¹³C₆-MCPA equivalents. We found characteristic differences of bioNER formation with distance to litter. While total NERs in soil at a distance of 2-5 mm were mostly identified as ¹³C-bioNERs (97%), only 45-46% of total NERs were assigned to bioNERs in the 0-2 and 5-20 mm layers. Phospholipid fatty acid analysis indicated that fungi and Gram-negative bacteria were mainly involved in MCPA degradation. Maize-C particularly stimulated fungal activity in the adjacent soil, which presumably facilitated non-biogenic NER formation. The plant litter accelerated formation of both non-toxic bioNERs and non-biogenic NERs. More studies on the structural composition of non-biogenic NERs with toxicity potential are needed for future recommendations on litter addition in agriculture.

Hydrogeochemical and microbiological effects of simulated recharge and drying within a 2D meso-scale aquifer

Oscillating cycles of dewatering (termed drying) and rewetting during managed aquifer recharge (MAR) are used to maintain infiltration rates and could also exert an influence on subsurface microbial structure and respiratory processes. Despite this practice, little knowledge is available about changes to microbial community structure and trace organic chemical biodegradation potential in MAR systems under these conditions. A biologically active two-dimensional (2D) synthetic MAR system equipped with automated sensors (temperature, water pressure, conductivity, soil moisture, oxidation-reduction potential) and embedded water and soil sampling ports was used to test and model these important subsurface processes at the meso-scale. The fate and transport of the antiepileptic drug carbamazepine, the antibiotics sulfamethoxazole and trimethoprim, and the flame retardant tris (2-chloroethyl) phosphate were simulated using the finite element analysis model, FEFLOW. All of these compounds exhibit moderate to poor biodegradability in MAR systems. Within the operational MAR scenario tested, three episodic drying cycles spanning between 18 and 24 days were conducted over a period of 184 days. Notably, cessation of flow and partial dewatering of the 2D synthetic aquifer during dry cycles caused no measurable decrease in soil moisture content beyond the near-surface layer. The episodic flow introduction and dewatering cycles in turn had little impact on overall trace organic chemical biotransformation behavior and soil microbial community structure. However, spatial differences in oxidation-reduction potential and soil moisture were both identified as significant environmental predictors for microbial community structure in the 2D synthetic aquifer.

Guiding Mineralization Co-Culture Discovery Using Bayesian Optimization

Many disciplines rely on testing combinations of compounds, materials, proteins, or bacterial species to drive scientific discovery. It is time-consuming and expensive to determine experimentally, via trial-and-error or random selection approaches, which of the many possible combinations will lead to desirable outcomes. Hence, there is a pressing need for more rational and efficient experimental design approaches to reduce experimental effort. In this work, we demonstrate the potential of machine learning methods for the in silico selection of promising co-culture combinations in the application of bioaugmentation. We use the example of pollutant removal in drinking water treatment plants, which can be achieved using co-cultures of a specialized pollutant degrader with combinations of bacterial isolates. To reduce the experimental effort needed to discover high-performing combinations, we propose a data-driven experimental design. Based on a dataset of mineralization performance for all pairs of 13 bacterial species co-cultured with MSH1, we built a Gaussian process regression model to predict the Gompertz mineralization parameters of the co-cultures of two and three species, based on the single-strain parameters. We subsequently used this model in a Bayesian optimization scheme to suggest potentially high-performing combinations of bacteria. We achieved good performance with this approach, both for predicting mineralization parameters and for selecting effective co-cultures, despite the limited dataset. As a novel application of Bayesian optimization in bioremediation, this experimental design approach has promising applications for highlighting co-culture combinations for in vitro testing in various settings, to lessen the experimental burden and perform more targeted screenings.

The pesticide mineralization capacity in sand filter units of drinking water treatment plants (DWTP): Consistency in time and relationship with intake water and sand filter characteristics

Sand filters (SFs) are commonly applied in drinking water treatment plants (DWTPs) for removal of iron and manganese but also show potential for microbial degradation of pesticide residues. The latter is advantageous in case the intake water contains pesticide residues. However, whether this involves mineralization suggesting no generation of harmful transformation products, its consistency over time, and how this ability relates to physicochemical and biological characteristics of the DWTP intake water and the SFs is unknown. The capacity to mineralize the herbicides bentazon and 2-methyl-4-chlorophenoxyacetic acid (MCPA) was examined in SF samples from 11 DWTPs differing in operation, intake water composition and pesticide contamination level. MCPA was mineralized in all biologically active SFs while mineralization of bentazon occurred rarely. Mineralization of both compounds was consistent in time and across samples taken from different SF units of the same DWTP. Kinetic modelling of mineralization curves suggested the occurrence of growth linked bentazon and MCPA mineralization in several SF samples. Multivariate analysis correlating intake water/SF characteristics with pesticide mineralization indicated that pesticide mineralization capacity depended on a range of intake water characteristics, but was not necessarily explained by the presence of the pesticide in the intake water and hence the in situ exposure of the SF community to the pesticide. This was supported by testing a sample from DWTP Kluizen for its capacity to mineralize 5 other pesticides including pesticides not present or occasionally present in the intake water. All of those pesticides were mineralized as well.

Effects of superabsorbent polymers on the fate of fungicidal carbendazim in soils

Superabsorbent polymers (SAPs) have been extensively used as soil amendments to retain water, and they often coexist with pesticides in agricultural fields. However, effects of SAPs on the fate of pesticides in soil remain poorly understood. In this study, a laboratory experiment was conducted to evaluate the effects of SAPs on the transformation of ¹⁴C-carbendazim in soils. The results showed that compared to the SAPs-free control, 11.4% relative reduction of ¹⁴C-carbendazim extractable residue was observed in red clayey soil with SAPs amendment after 100days of incubation (p<0.05). Carbendazim dissipation was enhanced by 34.7%, while no obvious difference was found in loamy soil and saline soil (p>0.05). SAPs changed the profiles of major metabolites (2-aminobenzimidazole and 2-hydroxybenzimidazole) to some extent. After 100days of SAPs treatment, the mineralization of ¹⁴C-carbendazim was significantly reduced by 37.6% and 41.2% in loamy soil and saline soil, respectively, relative to the SAPs-free treatment (p<0.05). SAPs increased the bound residue of carbendazim by 11.1-19.1% in comparison with SAPs-free controls. These findings suggest SAPs amendments significantly affected the fate of carbendazim and attention should be given to the assessment of environmental and ecological safety of pesticides in SAPs-amended soils.