1
|
Fernandez R, Colás-Ruiz NR, Lara-Martín PA, Fernández-Cisnal R, Hampel M. Proteomic analysis in the brain and liver of sea bream (Sparus aurata) exposed to the antibiotics ciprofloxacin, sulfadiazine, and trimethoprim. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 356:124308. [PMID: 38844040 DOI: 10.1016/j.envpol.2024.124308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 05/31/2024] [Accepted: 06/01/2024] [Indexed: 06/10/2024]
Abstract
Antibiotics, frequently detected in aquatic ecosystems, can negatively impact the health of resident organisms. Although the study on the possible effects of antibiotics on these organisms has been increasing, there is still little information available on the molecular effects on exposed non-target organisms. In our study we used a label free proteomic approach and sea bream, Sparus aurata, to evaluate the effects of exposure to environmentally relevant concentrations of the antibiotic compounds ciprofloxacin (CIP), sulfadiazine (SULF) and trimethoprim (TRIM) produced at the protein level. Individuals of sea bream were exposed to single compounds at 5.2 ± 2.1 μg L-1 of CIP, 3.8 ± 2.7 μg L-1 of SULF and 25.7 ± 10.8 μg L-1 of TRIM for 21 days. After exposure, the number of differentially expressed proteins in the liver was 39, 73 and 4 for CIP, SULF and TRIM respectively. In the brain, there was no alteration of proteins after CIP and TRIM treatment, while 9 proteins were impacted after SULF treatment. The differentially expressed proteins were involved in cellular biological, metabolic, developmental, growth and biological regulatory processes. Overall, our study evidences the vulnerability of Sparus aurata, after exposure to environmentally relevant concentrations of the major antibiotics CIP, SULF and TRIM and that their chronic exposure could lead to a stress situation, altering the proteomic profile of key organs such as brain and liver.
Collapse
Affiliation(s)
- Ronield Fernandez
- Microbiology Research Laboratory, University Simon Bolivar, Carrera 59 No. 59-65, Barranquilla, Colombia; Center for Research and Innovation in Biodiversity and Climate Change (ADAPTIA), University Simón Bolívar, Barranquilla 59-65, Colombia.
| | - Nieves R Colás-Ruiz
- Department of Physical Chemistry, Faculty of Marine and Environmental Sciences, University of Cadiz, University Institute for Marine Research (INMAR), 11510, Puerto Real, Spain
| | - Pablo A Lara-Martín
- Department of Physical Chemistry, Faculty of Marine and Environmental Sciences, University of Cadiz, University Institute for Marine Research (INMAR), 11510, Puerto Real, Spain
| | - Ricardo Fernández-Cisnal
- Department of Biochemistry and Molecular Biology, University of Córdoba, Campus Universitario de Rabanales, 14071, Córdoba, Spain
| | - Miriam Hampel
- Department of Physical Chemistry, Faculty of Marine and Environmental Sciences, University of Cadiz, University Institute for Marine Research (INMAR), 11510, Puerto Real, Spain
| |
Collapse
|
2
|
Guo Y, Askari N, Smets I, Appels L. A review on co-metabolic degradation of organic micropollutants during anaerobic digestion: Linkages between functional groups and digestion stages. WATER RESEARCH 2024; 256:121598. [PMID: 38663209 DOI: 10.1016/j.watres.2024.121598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 03/13/2024] [Accepted: 04/09/2024] [Indexed: 05/12/2024]
Abstract
The emerging presence of organic micropollutants (OMPs) in water bodies produced by human activities is a source of growing concern due to their environmental and health issues. Biodegradation is a widely employed treatment method for OMPs in wastewater owing to its high efficiency and low operational cost. Compared to aerobic degradation, anaerobic degradation has numerous advantages, including energy efficiency and superior performance for certain recalcitrant compounds. Nonetheless, the low influent concentrations of OMPs in wastewater treatment plants (WWTPs) and their toxicity make it difficult to support the growth of microorganisms. Therefore, co-metabolism is a promising mechanism for OMP biodegradation in which co-substrates are added as carbon and energy sources and stimulate increased metabolic activity. Functional microorganisms and enzymes exhibit significant variations at each stage of anaerobic digestion affecting the environment for the degradation of OMPs with different structural properties, as these factors substantially influence OMPs' biodegradability and transformation pathways. However, there is a paucity of literature reviews that explicate the correlations between OMPs' chemical structure and specific metabolic conditions. This study provides a comprehensive review of the co-metabolic processes which are favored by each stage of anaerobic digestion and attempts to link various functional groups to their favorable degradation pathways. Furthermore, potential co-metabolic processes and strategies that can enhance co-digestion are also identified, providing directions for future research.
Collapse
Affiliation(s)
- Yutong Guo
- KU Leuven, Department of Chemical Engineering, Chemical and Biochemical Reactor Engineering and Safety (CREaS) Campus De Nayer, Jan Pieter De Nayerlaan 5, Sint-Katelijne-Waver 2860, Belgium
| | - Najmeh Askari
- KU Leuven, Department of Chemical Engineering, Chemical and Biochemical Reactor Engineering and Safety (CREaS) Campus De Nayer, Jan Pieter De Nayerlaan 5, Sint-Katelijne-Waver 2860, Belgium
| | - Ilse Smets
- KU Leuven, Department of Chemical Engineering, Chemical and Biochemical Reactor Engineering and Safety (CREaS), Celestijnenlaan 200F box 2424, Heverlee 3001, Belgium
| | - Lise Appels
- KU Leuven, Department of Chemical Engineering, Chemical and Biochemical Reactor Engineering and Safety (CREaS) Campus De Nayer, Jan Pieter De Nayerlaan 5, Sint-Katelijne-Waver 2860, Belgium.
| |
Collapse
|
3
|
Dumas T, Gomez E, Boccard J, Ramirez G, Armengaud J, Escande A, Mathieu O, Fenet H, Courant F. Mixture effects of pharmaceuticals carbamazepine, diclofenac and venlafaxine on Mytilus galloprovincialis mussel probed by metabolomics and proteogenomics combined approach. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 907:168015. [PMID: 37879482 DOI: 10.1016/j.scitotenv.2023.168015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 10/20/2023] [Accepted: 10/20/2023] [Indexed: 10/27/2023]
Abstract
Exposure to single molecules under laboratory conditions has led to a better understanding of the mechanisms of action (MeOAs) and effects of pharmaceutical active compounds (PhACs) on non-target organisms. However, not taking the co-occurrence of contaminants in the environment and their possible interactions into account may lead to underestimation of their impacts. In this study, we combined untargeted metabolomics and proteogenomics approaches to assess the mixture effects of diclofenac, carbamazepine and venlafaxine on marine mussels (Mytilus galloprovincialis). Our multi-omics approach and data fusion strategy highlighted how such xenobiotic cocktails induce important cellular changes that can be harmful to marine bivalves. This response is mainly characterized by energy metabolism disruption, fatty acid degradation, protein synthesis and degradation, and the induction of endoplasmic reticulum stress and oxidative stress. The known MeOAs and molecular signatures of PhACs were taken into consideration to gain insight into the mixture effects, thereby revealing a potential additive effect. Multi-omics approaches on mussels as sentinels offer a comprehensive overview of molecular and cellular responses triggered by exposure to contaminant mixtures, even at environmental concentrations.
Collapse
Affiliation(s)
- Thibaut Dumas
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Elena Gomez
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Julien Boccard
- School of Pharmaceutical Sciences, University of Geneva, Geneva 1211, Switzerland; Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Geneva 1211, Switzerland
| | - Gaëlle Ramirez
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Jean Armengaud
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, Bagnols-sur-Cèze, France
| | - Aurélie Escande
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Olivier Mathieu
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France; Laboratoire de Pharmacologie-Toxicologie, CHU de Montpellier, Montpellier, France
| | - Hélène Fenet
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Frédérique Courant
- HydroSciences Montpellier, IRD, CNRS, University of Montpellier, Montpellier, France.
| |
Collapse
|
4
|
Lin MS, Varunjikar MS, Lie KK, Søfteland L, Dellafiora L, Ørnsrud R, Sanden M, Berntssen MHG, Dorne JLCM, Bafna V, Rasinger JD. Multi-tissue proteogenomic analysis for mechanistic toxicology studies in non-model species. ENVIRONMENT INTERNATIONAL 2023; 182:108309. [PMID: 37980879 DOI: 10.1016/j.envint.2023.108309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 08/15/2023] [Accepted: 11/04/2023] [Indexed: 11/21/2023]
Abstract
New approach methodologies (NAM), including omics and in vitro approaches, are contributing to the implementation of 3R (reduction, refinement and replacement) strategies in regulatory science and risk assessment. In this study, we present an integrative transcriptomics and proteomics analysis workflow for the validation and revision of complex fish genomes and demonstrate how proteogenomics expression matrices can be used to support multi-level omics data integration in non-model species in vivo and in vitro. Using Atlantic salmon as an example, we constructed proteogenomic databases from publicly available transcriptomic data and in-house generated RNA-Seq and LC-MS/MS data. Our analysis identified ∼80,000 peptides, providing direct evidence of translation for over 40,000 RefSeq structures. The data also highlighted 183 co-located peptide groups that supported a single transcript each, and in each case, either corrected a previous annotation, supported Ensembl annotations not present in RefSeq, or identified novel previously unannotated genes. Proteogenomics data-derived expression matrices revealed distinct profiles for the different tissue types analyzed. Focusing on proteins involved in defense against xenobiotics, we detected distinct expression patterns across different salmon tissues and observed homology in the expression of chemical defense proteins between in vivo and in vitro liver systems. Our study demonstrates the potential of proteogenomic analyses in extending our understanding of complex fish genomes and provides an advanced bioinformatic toolkit to support the further development of NAMs and their application in regulatory science and (eco)toxicological studies of non-model species.
Collapse
Affiliation(s)
- M S Lin
- Bioinformatics and Systems Biology Program, UC San Diego, San Diego, CA, United States.
| | | | - K K Lie
- Institute of Marine Research, Bergen, Norway.
| | - L Søfteland
- Institute of Marine Research, Bergen, Norway.
| | - L Dellafiora
- Department of Food and Drug, University of Parma, Parco Area delle Scienze 27/A, 43124 Parma, Italy.
| | - R Ørnsrud
- Institute of Marine Research, Bergen, Norway.
| | - M Sanden
- Institute of Marine Research, Bergen, Norway.
| | | | - J L C M Dorne
- European Food Safety Authority, Methodological and Scientific Support Unit, Via Carlo Magno 1A, 43121 Parma, Italy.
| | - V Bafna
- Computer Science & Engineering and HDSI, UC San Diego, San Diego, CA, United States.
| | | |
Collapse
|
5
|
Baratange C, Baali H, Gaillet V, Bonnard I, Delahaut L, Gaillard JC, Grandjean D, Sayen S, Gallorini A, Le Bris N, Renault D, Breider F, Loizeau JL, Armengaud J, Cosio C. Bioaccumulation and molecular effects of carbamazepine and methylmercury co-exposure in males of Dreissena polymorpha. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 897:165379. [PMID: 37423277 DOI: 10.1016/j.scitotenv.2023.165379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/26/2023] [Accepted: 07/05/2023] [Indexed: 07/11/2023]
Abstract
Dreissena polymorpha is a bivalve promising for biomonitoring in freshwater ecosystems thanks to its abundance and high filtration activity allowing rapid uptake of toxicants and identification of their negative effects. Nonetheless, we still lack knowledge on its molecular responses to stress under realistic scenario, e.g. multi-contamination. Carbamazepine (CBZ) and Hg are ubiquitous pollutants sharing molecular toxicity pathways, e.g. oxidative stress. A previous study in zebra mussels showed their co-exposure to cause more alterations than single exposures, but molecular toxicity pathways remained unidentified. D. polymorpha was exposed 24 h (T24) and 72 h (T72) to CBZ (6.1 ± 0.1 μg L-1), MeHg (430 ± 10 ng L-1) and the co-exposure (6.1 ± 0.1 μg L-1CBZ and 500 ± 10 ng L-1 MeHg) at concentrations representative of polluted areas (~10× EQS). RedOx system at the gene and enzyme level, the proteome and the metabolome were compared. The co-exposure resulted in 108 differential abundant proteins (DAPs), as well as 9 and 10 modulated metabolites at T24 and T72, respectively. The co-exposure specifically modulated DAPs and metabolites involved in neurotransmission, e.g. dopaminergic synapse and GABA. CBZ specifically modulated 46 DAPs involved in calcium signaling pathways and 7 amino acids at T24. MeHg specifically modulated 55 DAPs involved in the cytoskeleton remodeling and hypoxia-induced factor 1 pathway, without altering the metabolome. Single and co-exposures commonly modulated proteins and metabolites involved in energy and amino acid metabolisms, response to stress and development. Concomitantly, lipid peroxidation and antioxidant activities were unchanged, supporting that D. polymorpha tolerated experimental conditions. The co-exposure was confirmed to cause more alterations than single exposures. This was attributed to the combined toxicity of CBZ and MeHg. Altogether, this study underlined the necessity to better characterize molecular toxicity pathways of multi-contamination that are not predictable on responses to single exposures, to better anticipate adverse effects in biota and improve risk assessment.
Collapse
Affiliation(s)
- Clément Baratange
- Université de Reims Champagne-Ardenne, UMR-I 02 INERIS-URCA-ULH SEBIO, Unité Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), BP 1039, F-51687 Reims Cedex, France
| | - Hugo Baali
- Université de Reims Champagne-Ardenne, UMR-I 02 INERIS-URCA-ULH SEBIO, Unité Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), BP 1039, F-51687 Reims Cedex, France
| | - Véronique Gaillet
- Université de Reims Champagne-Ardenne, UMR-I 02 INERIS-URCA-ULH SEBIO, Unité Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), BP 1039, F-51687 Reims Cedex, France
| | - Isabelle Bonnard
- Université de Reims Champagne-Ardenne, UMR-I 02 INERIS-URCA-ULH SEBIO, Unité Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), BP 1039, F-51687 Reims Cedex, France
| | - Laurence Delahaut
- Université de Reims Champagne-Ardenne, UMR-I 02 INERIS-URCA-ULH SEBIO, Unité Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), BP 1039, F-51687 Reims Cedex, France
| | - Jean-Charles Gaillard
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, F-30200 Bagnols-sur-Cèze Cedex, France
| | - Dominique Grandjean
- Ecole Polytechnique Fédérale de Lausanne (EPFL), ENAC, IIE, Central Environmental Laboratory, Station 2, 1015 Lausanne, Switzerland
| | - Stéphanie Sayen
- Université de Reims Champagne-Ardenne, Institut de Chimie Moléculaire de Reims (ICMR), UMR CNRS 7312, BP 1039, F-51687 Reims Cedex, 2, France
| | - Andrea Gallorini
- Department F.-A. Forel for Environmental and Aquatic Sciences, Institute for Environmental Sciences, University of Geneva, Boulevard Carl-Vogt 66, 1211, Geneva 4, Switzerland
| | - Nathalie Le Bris
- Université de Rennes, CNRS, EcoBio (Ecosystèmes, biodiversité, évolution) - UMR 6553, F-35000 Rennes, France
| | - David Renault
- Université de Rennes, CNRS, EcoBio (Ecosystèmes, biodiversité, évolution) - UMR 6553, F-35000 Rennes, France; Institut Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
| | - Florian Breider
- Ecole Polytechnique Fédérale de Lausanne (EPFL), ENAC, IIE, Central Environmental Laboratory, Station 2, 1015 Lausanne, Switzerland
| | - Jean-Luc Loizeau
- Department F.-A. Forel for Environmental and Aquatic Sciences, Institute for Environmental Sciences, University of Geneva, Boulevard Carl-Vogt 66, 1211, Geneva 4, Switzerland
| | - Jean Armengaud
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, F-30200 Bagnols-sur-Cèze Cedex, France
| | - Claudia Cosio
- Université de Reims Champagne-Ardenne, UMR-I 02 INERIS-URCA-ULH SEBIO, Unité Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO), BP 1039, F-51687 Reims Cedex, France.
| |
Collapse
|
6
|
Leprêtre M, Degli Esposti D, Sugier K, Espeyte A, Gaillard JC, Delorme N, Duflot A, Bonnard I, Coulaud R, Boulangé-Lecomte C, Xuereb B, Palos Ladeiro M, Geffard A, Geffard O, Armengaud J, Chaumot A. Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species. Sci Data 2023; 10:643. [PMID: 37735452 PMCID: PMC10514328 DOI: 10.1038/s41597-023-02545-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 09/05/2023] [Indexed: 09/23/2023] Open
Abstract
Proteogenomic methodologies have enabled the identification of protein sequences in wild species without annotated genomes, shedding light on molecular mechanisms affected by pollution. However, proteomic resources for sentinel species are limited, and organ-level investigations are necessary to expand our understanding of their molecular biology. This study presents proteomic resources obtained from proteogenomic analyses of key organs (hepatopancreas, gills, hemolymph) from three established aquatic sentinel invertebrate species of interest in ecotoxicological/ecological research and environmental monitoring: Gammarus fossarum, Dreissena polymorpha, and Palaemon serratus. Proteogenomic analyses identified thousands of proteins for each species, with over 90% of them being annotated to putative function. Functional analysis validated the relevance of the proteomic atlases by revealing similarities in functional annotation of catalogues of proteins across analogous organs in the three species, while deep contrasts between functional profiles are delimited across different organs in the same organism. These organ-level proteomic atlases are crucial for future research on these sentinel animals, aiding in the evaluation of aquatic environmental risks and providing a valuable resource for ecotoxicological studies.
Collapse
Affiliation(s)
- Maxime Leprêtre
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France.
| | - Davide Degli Esposti
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Kevin Sugier
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Anabelle Espeyte
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Jean-Charles Gaillard
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, F-30200, Bagnols-sur-Cèze, France
| | - Nicolas Delorme
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Aurélie Duflot
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Isabelle Bonnard
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, UFR Sciences Exactes et Naturelles, Campus Moulin de la Housse, BP 1039, 51687, Reims, France
| | - Romain Coulaud
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Céline Boulangé-Lecomte
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Benoît Xuereb
- Université Le Havre Normandie, Normandie Univ, FR CNRS 3730 SCALE, UMR-I 02 SEBIO, Le Havre, F-76600, Le Havre, France
| | - Mélissa Palos Ladeiro
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, UFR Sciences Exactes et Naturelles, Campus Moulin de la Housse, BP 1039, 51687, Reims, France
| | - Alain Geffard
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, UFR Sciences Exactes et Naturelles, Campus Moulin de la Housse, BP 1039, 51687, Reims, France
| | - Olivier Geffard
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France
| | - Jean Armengaud
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, F-30200, Bagnols-sur-Cèze, France
| | - Arnaud Chaumot
- INRAE, UR RiverLy, Laboratoire d'écotoxicologie, 5 rue de la Doua, F-69625, Villeurbanne, France.
| |
Collapse
|
7
|
Castaño-Ortiz JM, Courant F, Gomez E, García-Pimentel MM, León VM, Campillo JA, Santos LHMLM, Barceló D, Rodríguez-Mozaz S. Combined exposure of the bivalve Mytilus galloprovincialis to polyethylene microplastics and two pharmaceuticals (citalopram and bezafibrate): Bioaccumulation and metabolomic studies. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131904. [PMID: 37356174 DOI: 10.1016/j.jhazmat.2023.131904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 06/09/2023] [Accepted: 06/19/2023] [Indexed: 06/27/2023]
Abstract
Pharmaceuticals and microplastics constitute potential hazards in aquatic systems, but their combined effects and underlying toxicity mechanisms remain largely unknown. In this study, a simultaneous characterization of bioaccumulation, associated metabolomic alterations and potential recovery mechanisms was performed. Specifically, a bioassay on Mediterranean mussels (Mytilus galloprovincialis) was carried out with polyethylene microplastics (PE-MPLs, 1 mg/L) and citalopram or bezafibrate (500 ng/L). Single and co-exposure scenarios lasted 21 days, followed by a 7-day depuration period to assess their potential recovery. PE-MPLs delayed the bioaccumulation of citalopram (lower mean at 10 d: 447 compared to 770 ng/g dw under single exposure), although reaching similar tissue concentrations after 21 d. A more limited accumulation of bezafibrate was observed overall, regardless of PE-MPLs co-exposure (<MQL-3.2 ng/g dw). Metabolic profiles showed a strong effect of pharmaceuticals, generally independent of PE-MPLs co-exposure. Alterations of the citrate cycle (bezafibrate exposure) and steroid and prostaglandin metabolism (citalopram and bezafibrate exposures) were highlighted. PE-MPLs alone also impacted metabolic pathways, such as neurotransmitters or purine metabolism. After depuration, relevant latent or long-lasting effects were demonstrated as, for instance, the effect of citalopram on neurotransmitters metabolism. Altogether, the observed molecular-level responses to pharmaceuticals and/or PE-MPLs may lead to a dysregulation of mussels' reproduction, energy metabolism, and/or immunity.
Collapse
Affiliation(s)
- J M Castaño-Ortiz
- University of Girona, Girona, Spain; Catalan Institute for Water Research (ICRA-CERCA), C/ Emili Grahit 101, 17003 Girona, Spain.
| | - F Courant
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - E Gomez
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - M M García-Pimentel
- Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de Murcia, C/Varadero 1, San Pedro del Pinatar, Murcia, Spain
| | - V M León
- Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de Murcia, C/Varadero 1, San Pedro del Pinatar, Murcia, Spain
| | - J A Campillo
- Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de Murcia, C/Varadero 1, San Pedro del Pinatar, Murcia, Spain
| | - L H M L M Santos
- University of Girona, Girona, Spain; Catalan Institute for Water Research (ICRA-CERCA), C/ Emili Grahit 101, 17003 Girona, Spain
| | - D Barceló
- University of Girona, Girona, Spain; Catalan Institute for Water Research (ICRA-CERCA), C/ Emili Grahit 101, 17003 Girona, Spain; Institute of Environmental Assessment and Water Research (IDAEA-CSIC) Severo Ochoa Excellence Centre, Department of Environmental Chemistry, C/ Jordi Girona 18-26, 08034 Barcelona, Spain
| | - S Rodríguez-Mozaz
- University of Girona, Girona, Spain; Catalan Institute for Water Research (ICRA-CERCA), C/ Emili Grahit 101, 17003 Girona, Spain
| |
Collapse
|
8
|
Del Carmen Gómez-Regalado M, Martín J, Hidalgo F, Santos JL, Aparicio I, Alonso E, Zafra-Gómez A. Bioconcentration of pharmaceuticals in benthic marine organisms (Holothuria tubulosa, Anemonia sulcata and Actinia equina) exposed to environmental contamination by atenolol and carbamazepine. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2023; 100:104147. [PMID: 37182729 DOI: 10.1016/j.etap.2023.104147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 04/20/2023] [Accepted: 05/11/2023] [Indexed: 05/16/2023]
Abstract
The present work assess the bioconcentration kinetics of atenolol (ATN) and carbamazepine (CBZ) in common marine organisms including Holothuria tubulosa, Anemonia sulcata and Actinia equina under controlled laboratory conditions. CBZ exhibited higher uptake and excretion rates resulting higher bioconcentration factor (BCF) (41-537L/kg for CBZ vs 7-50L/kg for ATN) although both are below the limits established by the European Union (EU). The measured BCF using kinetic data showed some differences with those predicted using the concentrations measured at the steady-state, probably explained because the steady state was not ready reached. The animal-specific BCF followed the order of Holothuria tubulosa >Actinia equina >Anemonia sulcata for ATN while was the opposite for CBZ. The study highlighted between-tissues differences in the digestive tract and the body wall of the Holothuria tubulosa. The work presented is the first to model bioconcentration of ATN and CBZ in holothurian and anemone animal models.
Collapse
Affiliation(s)
| | - Julia Martín
- Department of Analytical Chemistry, Escuela Politécnica Superior, University of Seville, C/ Virgen de África 7, E-41011 Seville, Spain.
| | - Felix Hidalgo
- Department of Zoology, Sciences Faculty, University of Granada, E-18071 Granada, Spain
| | - Juan Luis Santos
- Department of Analytical Chemistry, Escuela Politécnica Superior, University of Seville, C/ Virgen de África 7, E-41011 Seville, Spain
| | - Irene Aparicio
- Department of Analytical Chemistry, Escuela Politécnica Superior, University of Seville, C/ Virgen de África 7, E-41011 Seville, Spain
| | - Esteban Alonso
- Department of Analytical Chemistry, Escuela Politécnica Superior, University of Seville, C/ Virgen de África 7, E-41011 Seville, Spain
| | - Alberto Zafra-Gómez
- Department of Analytical Chemistry, Sciences Faculty, University of Granada, E-18071 Granada, Spain; Instituto de Investigación Biosanitaria, Ibs.Granada, E-18016 Granada, Spain; Institute of Nutrition and Food Technology, INYTA, University of Granada, Spain.
| |
Collapse
|
9
|
James L, Gomez E, Ramirez G, Dumas T, Courant F. Liquid chromatography-mass spectrometry based metabolomics investigation of different tissues of Mytilus galloprovincialis. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2023; 45:101051. [PMID: 36527760 DOI: 10.1016/j.cbd.2022.101051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 11/24/2022] [Accepted: 12/04/2022] [Indexed: 12/13/2022]
Abstract
The Mediterranean mussel (Mytilus galloprovincialis) is widely used in monitoring programs and in ecotoxicological studies to examine the biological effects of physicochemical parameter changes and the impact of chemical pollutants. Metabolomics has recently demonstrated high potential to gain further insight into the molecular effects of chemical exposure and the success of its application is dependent on the extent of prior metabolomics knowledge available on the target organism. Therefore, the purpose of this study was the investigation of the metabolites of five different functional tissues of male and female Mediterranean mussels (digestive gland, foot, gill and gonad tissues and in the remaining soft tissues) accessible to the analysis using the most common sample preparation recommended for tissue analysis (i.e. Bligh & Dyer). Metabolic fingerprints were acquired via liquid chromatography high-resolution mass spectrometry and the identification was based on an internal database developed in the laboratory. It led to the identification of 110 metabolites, among which amino acids, carboxylic acids, purine and pyrimidine metabolites were often the most abundant. The metabolic contents of the five tissues quantitatively and qualitatively differed, with a clear distinction between male and female contents observed in the gonads and digestive glands. These results underline the importance of selecting the most suitable tissue and sex to study the impact of contamination on metabolism and the need for further research to deeper characterize the metabolome of this organism.
Collapse
Affiliation(s)
- Lea James
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Elena Gomez
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Gaelle Ramirez
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Thibaut Dumas
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Frédérique Courant
- HydroSciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France.
| |
Collapse
|
10
|
Molecular Responses of Daphnids to Chronic Exposures to Pharmaceuticals. Int J Mol Sci 2023; 24:ijms24044100. [PMID: 36835510 PMCID: PMC9964447 DOI: 10.3390/ijms24044100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 02/10/2023] [Accepted: 02/12/2023] [Indexed: 02/22/2023] Open
Abstract
Pharmaceutical compounds are among several classes of contaminants of emerging concern, such as pesticides, heavy metals and personal care products, all of which are a major concern for aquatic ecosystems. The hazards posed by the presence of pharmaceutical is one which affects both freshwater organisms and human health-via non-target effects and by the contamination of drinking water sources. The molecular and phenotypic alterations of five pharmaceuticals which are commonly present in the aquatic environment were explored in daphnids under chronic exposures. Markers of physiology such as enzyme activities were combined with metabolic perturbations to assess the impact of metformin, diclofenac, gabapentin, carbamazepine and gemfibrozil on daphnids. Enzyme activity of markers of physiology included phosphatases, lipase, peptidase, β-galactosidase, lactate dehydrogenase, glutathione-S-transferase and glutathione reductase activities. Furthermore, targeted LC-MS/MS analysis focusing on glycolysis, the pentose phosphate pathway and the TCA cycle intermediates was performed to assess metabolic alterations. Exposure to pharmaceuticals resulted in the changes in activity for several enzymes of metabolism and the detoxification enzyme glutathione-S-transferase. Metabolic perturbations on key pathways revealed distinct groups and metabolic fingerprints for the different exposures and their mixtures. Chronic exposure to pharmaceuticals at low concentrations revealed significant alterations of metabolic and physiological endpoints.
Collapse
|
11
|
Colás-Ruiz NR, Courant F, Gomez E, Lara-Martín PA, Hampel M. Transcriptomic and metabolomic integration to assess the response of gilthead sea bream (Sparus aurata) exposed to the most used insect repellent: DEET. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 316:120678. [PMID: 36403875 DOI: 10.1016/j.envpol.2022.120678] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 11/12/2022] [Accepted: 11/14/2022] [Indexed: 06/16/2023]
Abstract
DEET is one of the most frequently detected insect repellents in the environment reaching concentrations of several μg L-1 in surface water. There is scarce information available regarding its mode of action in non-target organisms. Here, we have used an integrated metabolomic and transcriptomic approach to elucidate the possible adverse effects of DEET exposure in the marine fish gilthead sea bream (Sparus aurata). Individuals were exposed at an environmentally relevant concentration of DEET (10 μg L-1) for 22 days in a continuous flow-through system. Transcriptomic analysis revealed 250 differentially expressed genes in liver, while metabolomic analysis identified 190 differentially modulated features in liver and 98 in plasma. Multi-omic data integration and visualization allowed elucidation of the modes of action of DEET exposure, including: energy depletion through the disruption of carbohydrate and amino acids metabolisms, oxidative stress leading to DNA damage, lipid peroxidation, and damage to cell membrane and apoptosis. Activation of xenobiotic pathway as well as the inmune-inflammatory reaction was evidenced in the present work.
Collapse
Affiliation(s)
- Nieves R Colás-Ruiz
- Faculty of Marine and Environmental Sciences (CASEM), University of Cadiz, 11510, Puerto Real, Cádiz, Spain.
| | - Frédérique Courant
- Hydrosciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Elena Gomez
- Hydrosciences Montpellier, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Pablo A Lara-Martín
- Faculty of Marine and Environmental Sciences (CASEM), University of Cadiz, 11510, Puerto Real, Cádiz, Spain
| | - Miriam Hampel
- Faculty of Marine and Environmental Sciences (CASEM), University of Cadiz, 11510, Puerto Real, Cádiz, Spain
| |
Collapse
|
12
|
Pérez-López C, Rodríguez-Mozaz S, Serra-Compte A, Alvarez-Muñoz D, Ginebreda A, Barceló D, Tauler R. Effects of sulfamethoxazole exposure on mussels (Mytilus galloprovincialis) metabolome using retrospective non-target high-resolution mass spectrometry and chemometric tools. Talanta 2022; 252:123804. [DOI: 10.1016/j.talanta.2022.123804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 05/31/2022] [Accepted: 06/03/2022] [Indexed: 11/28/2022]
|
13
|
Circulating Metabolites as Biomarkers of Disease in Patients with Mesial Temporal Lobe Epilepsy. Metabolites 2022; 12:metabo12050446. [PMID: 35629950 PMCID: PMC9148034 DOI: 10.3390/metabo12050446] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/06/2022] [Accepted: 05/12/2022] [Indexed: 12/10/2022] Open
Abstract
A major challenge in the clinical management of patients with mesial temporal lobe epilepsy (MTLE) is identifying those who do not respond to antiseizure medication (ASM), allowing for the timely pursuit of alternative treatments such as epilepsy surgery. Here, we investigated changes in plasma metabolites as biomarkers of disease in patients with MTLE. Furthermore, we used the metabolomics data to gain insights into the mechanisms underlying MTLE and response to ASM. We performed an untargeted metabolomic method using magnetic resonance spectroscopy and multi- and univariate statistical analyses to compare data obtained from plasma samples of 28 patients with MTLE compared to 28 controls. The patients were further divided according to response to ASM for a supplementary and preliminary comparison: 20 patients were refractory to treatment, and eight were responsive to ASM. We only included patients using carbamazepine in combination with clobazam. We analyzed the group of patients and controls and found that the profiles of glucose (p = 0.01), saturated lipids (p = 0.0002), isoleucine (p = 0.0001), β-hydroxybutyrate (p = 0.0003), and proline (p = 0.02) were different in patients compared to controls (p < 0.05). In addition, we found some suggestive metabolites (without enough predictability) by multivariate analysis (VIP scores > 2), such as lipoproteins, lactate, glucose, unsaturated lipids, isoleucine, and proline, that might be relevant to the process of pharmacoresistance in the comparison between patients with refractory and responsive MTLE. The identified metabolites for the comparison between MTLE patients and controls were linked to different biological pathways related to cell-energy metabolism and pathways related to inflammatory processes and the modulation of neurotransmitter release and activity in MTLE. In conclusion, in addition to insights into the mechanisms underlying MTLE, our results suggest that plasma metabolites may be used as disease biomarkers. These findings warrant further studies exploring the clinical use of metabolites to assist in decision-making when treating patients with MTLE.
Collapse
|
14
|
Dumas T, Courant F, Fenet H, Gomez E. Environmental Metabolomics Promises and Achievements in the Field of Aquatic Ecotoxicology: Viewed through the Pharmaceutical Lens. Metabolites 2022; 12:metabo12020186. [PMID: 35208259 PMCID: PMC8880617 DOI: 10.3390/metabo12020186] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 02/14/2022] [Accepted: 02/16/2022] [Indexed: 02/04/2023] Open
Abstract
Scientists often set ambitious targets using environmental metabolomics to address challenging ecotoxicological issues. This promising approach has a high potential to elucidate the mechanisms of action (MeOAs) of contaminants (in hazard assessments) and to develop biomarkers (in environmental biomonitoring). However, metabolomics fingerprints often involve a complex mixture of molecular effects that are hard to link to a specific MeOA (if detected in the analytical conditions used). Given these promises and limitations, here we propose an updated review on the achievements of this approach. Metabolomics-based studies conducted on the effects of pharmaceutical active compounds in aquatic organisms provide a relevant means to review the achievements of this approach, as prior knowledge about the MeOA of these molecules could help overcome some shortcomings. This review highlighted that current metabolomics advances have enabled more accurate MeOA assessment, especially when combined with other omics approaches. The combination of metabolomics with other measured biological endpoints has also turned out to be an efficient way to link molecular effects to (sub)-individual adverse outcomes, thereby paving the way to the construction of adverse outcome pathways (AOPs). Here, we also discuss the importance of determining MeOA as a key strategy in the identification of MeOA-specific biomarkers for biomonitoring. We have put forward some recommendations to take full advantage of environmental metabolomics and thus help fulfil these promises.
Collapse
|
15
|
Lemos MFL. Biomarker Studies in Stress Biology: From the Gene to Population, from the Organism to the Application. BIOLOGY 2021; 10:1340. [PMID: 34943255 PMCID: PMC8698987 DOI: 10.3390/biology10121340] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 11/27/2021] [Accepted: 12/01/2021] [Indexed: 12/18/2022]
Abstract
Endpoints assessed at the population or community level are most often the result of the sum of effects on individuals, arising from the effects at the cellular and molecular levels. Within this framework, these lower biological level endpoints are more responsive at an early stage of exposure, making them potential toolboxes to be used as early-warning markers to address stress. Given this, by linking responses and understanding organisms' metabolism and physiology, the possibilities for the use of biomarkers in stress biology are vast. Here, biomarker comprehensive examples are given to enlighten the need to link levels of biological organization, and their usefulness for a myriad of fields and applications is presented and discussed.
Collapse
Affiliation(s)
- Marco F L Lemos
- MARE-Marine and Environmental Sciences Centre, ESTM, Polytechnic of Leiria, 2520-641 Peniche, Portugal
| |
Collapse
|