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Thormann W, Mosher RA. Dynamic computer simulations of electrophoresis: 2010-2020. Electrophoresis 2021; 43:10-36. [PMID: 34287996 PMCID: PMC9292373 DOI: 10.1002/elps.202100191] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 07/12/2021] [Accepted: 07/15/2021] [Indexed: 02/05/2023]
Abstract
The transport of components in liquid media under the influence of an applied electric field can be described with the continuity equation. It represents a nonlinear conservation law that is based upon the balance laws of continuous transport processes and can be solved in time and space numerically. This procedure is referred to as dynamic computer simulation. Since its inception four decades ago, the state of dynamic computer simulation software and its use has progressed significantly. Dynamic models are the most versatile tools to explore the fundamentals of electrokinetic separations and provide insights into the behavior of buffer systems and sample components of all electrophoretic separation methods, including moving boundary electrophoresis, CZE, CGE, ITP, IEF, EKC, ACE, and CEC. This article is a continuation of previous reviews (Electrophoresis 2009, 30, S16–S26 and Electrophoresis 2010, 31, 726–754) and summarizes the progress and achievements made during the 2010 to 2020 time period in which some of the existing dynamic simulators were extended and new simulation packages were developed. This review presents the basics and extensions of the three most used one‐dimensional simulators, provides a survey of new one‐dimensional simulators, outlines an overview of multi‐dimensional models, and mentions models that were briefly reported in the literature. A comprehensive discussion of simulation applications and achievements of the 2010 to 2020 time period is also included.
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Affiliation(s)
- Wolfgang Thormann
- Institute for Infectious Diseases, University of Bern, Bern, Switzerland
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He M, Luo P, Hong J, Wang X, Wu H, Zhang R, Qu F, Xiang Y, Xu W. Structural Analysis of Biomolecules through a Combination of Mobility Capillary Electrophoresis and Mass Spectrometry. ACS OMEGA 2019; 4:2377-2386. [PMID: 31459477 PMCID: PMC6648644 DOI: 10.1021/acsomega.8b03224] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 01/24/2019] [Indexed: 05/08/2023]
Abstract
The 3D structures of biomolecules determine their biological function. Established methods in biomolecule structure determination typically require purification, crystallization, or modification of target molecules, which limits their applications for analyzing trace amounts of biomolecules in complex matrices. Here, we developed instruments and methods of mobility capillary electrophoresis (MCE) and its coupling with MS for the 3D structural analysis of biomolecules in the liquid phase. Biomolecules in complex matrices could be separated by MCE and sequentially detected by MS. The effective radius and the aspect ratio of each separated biomolecule were simultaneously determined through the separation by MCE, which were then used as restraints in determining biomolecule conformations through modeling. Feasibility of this method was verified by analyzing a mixture of somatostatin and bradykinin, two peptides with known liquid-phase structures. Proteins could also be structurally analyzed using this method, which was demonstrated for lysozyme. The combination of MCE and MS for complex sample analysis was also demonstrated. MCE and MCE-MS would allow us to analyze trace amounts of biomolecules in complex matrices, which has the potential to be an alternative and powerful biomolecule structure analysis technique.
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Affiliation(s)
- Muyi He
- College
of Information Science, Shenzhen University, Shenzhen 518060, China
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
| | - Pan Luo
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
| | - Jie Hong
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
| | - Xiaofeng Wang
- Institute
of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Haimei Wu
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
| | - Rongkai Zhang
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
| | - Feng Qu
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
| | - Ye Xiang
- Beijing
Advanced Innovation Center for Structural Biology, Department of Basic
Medical Sciences, School of Medicine, Tsinghua
University, Beijing 100084, China
- E-mail: (Y.X.)
| | - Wei Xu
- College
of Information Science, Shenzhen University, Shenzhen 518060, China
- School
of Life Science, Beijing Institute of Technology, Beijing 100081, China
- E-mail: (W.X.)
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Olędzka I, Kowalski P, Plenis A, Miękus N, Grabow N, Eickner T, Bączek T. Simultaneous electrokinetic and hydrodynamic injection and sequential stacking featuring sweeping for signal amplification following MEKC during the analysis of rapamycin (sirolimus) in serum samples. Electrophoresis 2018; 39:2590-2597. [DOI: 10.1002/elps.201800081] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 06/12/2018] [Accepted: 06/17/2018] [Indexed: 01/14/2023]
Affiliation(s)
- Ilona Olędzka
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Gdańsk Poland
| | - Piotr Kowalski
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Gdańsk Poland
| | - Alina Plenis
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Gdańsk Poland
| | - Natalia Miękus
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Gdańsk Poland
- Department of Animal and Human Physiology; Faculty of Biology; University of Gdańsk; Gdańsk Poland
| | - Niels Grabow
- University Medical Center Rostock; Institute for Biomedical Engineering; Rostock Germany
| | - Thomas Eickner
- University Medical Center Rostock; Institute for Biomedical Engineering; Rostock Germany
| | - Tomasz Bączek
- Department of Pharmaceutical Chemistry; Medical University of Gdańsk; Gdańsk Poland
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High-resolution dynamic computer simulation of electrophoresis using a multiphysics software platform. J Chromatogr A 2017; 1532:216-222. [PMID: 29191404 DOI: 10.1016/j.chroma.2017.11.060] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 11/21/2017] [Accepted: 11/25/2017] [Indexed: 11/21/2022]
Abstract
The modeling and simulation software COMSOL Multiphysics® was recently extended with an electrophoretic transport interface. Its performance was investigated by comparison to results obtained using the 1D dynamic electrophoresis simulators GENTRANS and SIMUL5. Simulations of zone electrophoresis, isotachophoresis, isoelectric focusing and of an oscillating electrolyte system were performed. Smooth profiles were essentially identical indicating that the COMSOL electrophoretic transport interface is able to reproduce results of the 1D simulators. Differences in the way the respective numerical schemes handle steep concentration gradients and associated instabilities were observed. The COMSOL electrophoretic transport interface is expected to be useful as a general model for simulations in 1D, 2D or 3D geometries, as well as for simulations combining electrophoresis with other physical phenomena.
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Koenka IJ, Hauser PC. Background conductivity independent counter flow preconcentration method for capillary electrophoresis. Electrophoresis 2017; 38:2721-2724. [PMID: 28387958 DOI: 10.1002/elps.201700071] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 03/30/2017] [Accepted: 03/30/2017] [Indexed: 01/18/2023]
Abstract
A preconcentration method for anions is presented, which relies on a trap created by applying an electric field against a hydrodynamic flow of the sample. The trapping zone is created in front of a cation exchange membrane that allows the isolation of the electrode and thus prevents any interference by electrolysis products. Preconcentration factors of up to 20 were demonstrated for nitrate and formate as model analyte ions and were linearly related to the sample volume passed through the trap. A discrimination between the ions was found possible by adjustment of the hydrodynamic flow velocity. The method was also found to be suitable for the preconcentration of an anion (nitrate at 100 μM) in presence of a second anion at a very high concentration (50 mM formate). The detection limits for the four anions chloride, nitrate, perchlorate, and formate could be lowered from 4, 4.3, 4.2, and 7.2 μM obtained without trapping respectively to 127, 142, 139, and 451 nM with trapping.
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Affiliation(s)
| | - Peter C Hauser
- Department of Chemistry, University of Basel, Basel, Switzerland
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Breadmore MC, Wuethrich A, Li F, Phung SC, Kalsoom U, Cabot JM, Tehranirokh M, Shallan AI, Abdul Keyon AS, See HH, Dawod M, Quirino JP. Recent advances in enhancing the sensitivity of electrophoresis and electrochromatography in capillaries and microchips (2014–2016). Electrophoresis 2016; 38:33-59. [DOI: 10.1002/elps.201600331] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 08/09/2016] [Accepted: 08/10/2016] [Indexed: 01/02/2023]
Affiliation(s)
- Michael C. Breadmore
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
- ARC Centre of Excellence for Electromaterials Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
- ASTech, ARC Training Centre for Portable Analytical Separation Technologies, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Alain Wuethrich
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Feng Li
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Sui Ching Phung
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Umme Kalsoom
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Joan M. Cabot
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
- ARC Centre of Excellence for Electromaterials Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Masoomeh Tehranirokh
- ASTech, ARC Training Centre for Portable Analytical Separation Technologies, School of Physical Science University of Tasmania Hobart Tasmania Australia
| | - Aliaa I. Shallan
- Department of Analytical Chemistry, Faculty of Pharmacy Helwan University Cairo Egypt
| | - Aemi S. Abdul Keyon
- Department of Chemistry, Faculty of Science Universiti Teknologi Malaysia Johor Bahru Johor Malaysia
| | - Hong Heng See
- Department of Chemistry, Faculty of Science Universiti Teknologi Malaysia Johor Bahru Johor Malaysia
- Centre for Sustainable Nanomaterials, Ibnu Sina Institute for Scientific and industrial Research Universiti Teknologi Malaysia Johor Bahru Johor Malaysia
| | - Mohamed Dawod
- Department of Chemistry University of Michigan Ann Arbor MI USA
| | - Joselito P. Quirino
- Australian Centre of Research on Separation Science, School of Physical Science University of Tasmania Hobart Tasmania Australia
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Šlampová A, Malá Z, Gebauer P, Boček P. Recent progress of sample stacking in capillary electrophoresis (2014-2016). Electrophoresis 2016; 38:20-32. [PMID: 27456212 DOI: 10.1002/elps.201600292] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Revised: 07/20/2016] [Accepted: 07/20/2016] [Indexed: 12/27/2022]
Abstract
The term "sample stacking" comprises a relatively broad spectrum of techniques that already form an almost inherent part of the methodology of CZE. Their principles are different but the effect is the same: concentration of a diluted analyte into a narrow zone and considerable increase of the method sensitivity. This review brings a survey of papers on electrophoretic sample stacking published approximately since the second quarter of 2014 till the first quarter of 2016. It is organized according to the principles of the stacking methods and includes chapters aimed at the concentration adjustment principle (Kohlrausch stacking), techniques based on pH changes, micellar methods, and other stacking techniques. Not reviewed are papers on transient ITP that are covered by another review in this issue.
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Affiliation(s)
- Andrea Šlampová
- Institute of Analytical Chemistry of the Czech Academy of Sciences, Brno, Czech Republic
| | - Zdena Malá
- Institute of Analytical Chemistry of the Czech Academy of Sciences, Brno, Czech Republic
| | - Petr Gebauer
- Institute of Analytical Chemistry of the Czech Academy of Sciences, Brno, Czech Republic
| | - Petr Boček
- Institute of Analytical Chemistry of the Czech Academy of Sciences, Brno, Czech Republic
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Recent advances in capillary electrophoretic migration techniques for pharmaceutical analysis (2013-2015). Electrophoresis 2016; 37:1591-608. [DOI: 10.1002/elps.201600058] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Revised: 03/04/2016] [Accepted: 03/04/2016] [Indexed: 11/07/2022]
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