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Arechederra M, Bik E, Rojo C, Elurbide J, Elizalde M, Kruk B, Krasnodębski M, Pertkiewicz J, Kozieł S, Grąt M, Raszeja‐Wyszomirska J, Rullan M, Alkorta‐Aranburu G, Oyón D, Fernández‐Barrena MG, Candels LS, Białek A, Krupa Ł, Schneider KM, Urman J, Strnad P, Trautwein C, Milkiewicz P, Krawczyk M, Ávila MA, Berasain C. Mutational Analysis of Bile Cell-Free DNA in Primary Sclerosing Cholangitis: A Pilot Study. Liver Int 2025; 45:e70049. [PMID: 40029142 PMCID: PMC11874897 DOI: 10.1111/liv.70049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/11/2024] [Revised: 02/17/2025] [Accepted: 02/20/2025] [Indexed: 03/05/2025]
Abstract
BACKGROUND Primary sclerosing cholangitis (PSC) is a chronic liver disease characterised by inflammation and fibrosis of the bile ducts, conferring an increased risk of cholangiocarcinoma (CCA). However, detecting CCA early in PSC patients remains challenging due to the limited sensitivity of conventional diagnostic methods, including imaging or bile duct brush cytology during endoscopic retrograde cholangiopancreatography (ERCP). This study aims to evaluate the potential of bile cell-free DNA (cfDNA) mutational analysis, termed the Bilemut assay, as a tool for CCA detection in PSC patients. METHODS Sixty-three PSC patients undergoing ERCP due to biliary strictures were prospectively recruited. Bile samples were collected, and cfDNA was extracted and analysed using the Oncomine Pan-Cancer Cell-Free assay. Twenty healthy liver donors were included for comparison. Samples with a mutant allele frequency (MAF) ≥ 0.1% were considered positive. Correlations between mutational status and clinical characteristics were assessed. RESULTS cfDNA mutational analysis was successful in all bile samples. Mutations predominantly in KRAS, GNAS, and TP53 were detected in 36.5% (23/63) of PSC patients, compared to 10% (2/20) of healthy donors (p = 0.0269). The clinical characteristics of Bilemut-positive and -negative patients were comparable, though there was a trend towards a lower prevalence of inflammatory bowel disease in the Bilemut-positive group. Among PSC patients diagnosed with CCA during follow-up, 75% were Bilemut-positive, suggesting an association between mutational status and malignancy risk. CONCLUSIONS Mutational analysis of cfDNA obtained from bile collected from PSC patients undergoing ERCP is feasible. Implementing the Bilemut assay may help identify patients needing closer surveillance and further imaging studies.
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Affiliation(s)
- Maria Arechederra
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
- IdiSNANavarra Institute for Health ResearchPamplonaSpain
- National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd, Carlos III Health Institute)MadridSpain
| | - Emil Bik
- Liver and Internal Medicine Unit, Department of General, Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Carla Rojo
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
| | - Jasmin Elurbide
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
- National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd, Carlos III Health Institute)MadridSpain
| | - María Elizalde
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
| | - Beata Kruk
- Laboratory of Metabolic Liver Diseases, Department of General, Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Maciej Krasnodębski
- Department of General Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Jan Pertkiewicz
- Department of General Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Sławomir Kozieł
- Department of General Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Michał Grąt
- Department of General Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Joanna Raszeja‐Wyszomirska
- Liver and Internal Medicine Unit, Department of General, Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
| | - Maria Rullan
- IdiSNANavarra Institute for Health ResearchPamplonaSpain
- Department of Gastroenterology and HepatologyNavarra University HospitalPamplonaSpain
| | | | - Daniel Oyón
- Department of Gastroenterology and HepatologyHospital General Universitario Gregorio MarañónMadridSpain
| | - Maite G. Fernández‐Barrena
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
- IdiSNANavarra Institute for Health ResearchPamplonaSpain
- National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd, Carlos III Health Institute)MadridSpain
| | - Lena S. Candels
- Medical Clinic III, Gastroenterology, Metabolic Diseases and Intensive CareUniversity Hospital RWTH Aachen, Health Care Provider of the European Reference Network on Rare Liver Disorders (ERN RARE LIVER)AachenGermany
| | - Andrzej Białek
- Department of GastroenterologyPomeranian Medical UniversitySzczecinPoland
| | - Łukasz Krupa
- Department of Gastroenterology and Hepatology With Internal Disease UnitTeaching Hospital No 1 in RzeszówRzeszówPoland
- Medical DepartmentUniversity of RzeszówRzeszówPoland
| | - Kai M. Schneider
- Department of Medicine 1University Hospital Carl Gustav Carus Dresden, Technische Universität (TU)DresdenGermany
- Center for Regenerative Therapies Dresden (CRTD), Technische Universität (TU)DresdenGermany
- Else Kroener Fresenius Center for Digital Health, Medical Faculty Carl Gustav Carus, TUD Dresden University of TechnologyDresdenGermany
- Department of Medicine IIIUniversity Hospital RWTH AachenAachenGermany
| | - Jesús Urman
- IdiSNANavarra Institute for Health ResearchPamplonaSpain
- Department of Gastroenterology and HepatologyNavarra University HospitalPamplonaSpain
| | - Pavel Strnad
- Medical Clinic III, Gastroenterology, Metabolic Diseases and Intensive CareUniversity Hospital RWTH Aachen, Health Care Provider of the European Reference Network on Rare Liver Disorders (ERN RARE LIVER)AachenGermany
| | - Christian Trautwein
- Department of ToxicologyLeibniz Research Centre for Working Environment and Human Factors (IfADo)DortmundGermany
| | - Piotr Milkiewicz
- Liver and Internal Medicine Unit, Department of General, Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
- Translational Medicine Group, Pomeranian Medical UniversitySzczecinPoland
| | - Marcin Krawczyk
- Laboratory of Metabolic Liver Diseases, Department of General, Transplant and Liver SurgeryMedical University of WarsawWarsawPoland
- Department of Gastroenterology, Hepatology and Transplant Medicine, Medical FacultyUniversity of Duisburg‐EssenEssenGermany
| | - Matías A. Ávila
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
- IdiSNANavarra Institute for Health ResearchPamplonaSpain
- National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd, Carlos III Health Institute)MadridSpain
| | - Carmen Berasain
- Hepatology Laboratory, Solid Tumors Program, CIMA, CCUNUniversity of NavarraPamplonaSpain
- National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd, Carlos III Health Institute)MadridSpain
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Rimassa L, Khan S, Groot Koerkamp B, Roessler S, Andersen JB, Raggi C, Lleo A, Nault JC, Calderaro J, Gabbi C, Kather JN, Banales JM, Bargellini I, Morement H, Krawczyk M, Farazi PA, Carpino G, Avila MA, Saborowski A, Cardinale V, Braconi C, Macias RI. Mapping the landscape of biliary tract cancer in Europe: challenges and controversies. THE LANCET REGIONAL HEALTH. EUROPE 2025; 50:101171. [PMID: 40093398 PMCID: PMC11910794 DOI: 10.1016/j.lanepe.2024.101171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 11/22/2024] [Accepted: 11/25/2024] [Indexed: 03/19/2025]
Abstract
Biliary tract cancer (BTC) is becoming more common worldwide, with geographic differences in incidence and risk factors. In Europe, BTC may be associated with primary sclerosing cholangitis, lithiasis, and liver cirrhosis, but is more frequently observed as a sporadic disease. BTC increasingly affects patients under 60 years, resulting in a significant social and economic burden. Early diagnosis remains challenging due to vague symptoms in 50% of patients with BTC, and lack of specific biomarkers, resulting in late presentation and poor prognosis. The identification of patients at increased risk and reliable biomarkers require collaborative efforts to make faster progress. This Series paper highlights the disparities in access to diagnostic tools and multidisciplinary care in Europe, particularly in economically disadvantaged regions, while identifying priority areas for improvement. Addressing these inequities requires harmonised guidelines, accelerated pathways to curative treatments, and improved awareness among healthcare professionals and the public. Multidisciplinary teams (MDTs) are crucial for the diagnosis of BTC and for improving patient outcomes, yet inconsistencies exist in their implementation not only between different countries, but also between different centres within a country. Collaboration and standardisation of diagnostic and treatment protocols across Europe are essential to effectively address the management of patients with BTC.
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Affiliation(s)
- Lorenza Rimassa
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, 20072, Pieve Emanuele, Milan, Italy
- Medical Oncology and Hematology Unit, Humanitas Cancer Center, IRCCS Humanitas Research Hospital, Via A. Manzoni 56, 20089, Rozzano, Milan, Italy
| | - Shahid Khan
- Department of Metabolism, Digestion and Reproduction, Imperial College London, Liver Unit, St Mary's Hospital Campus, South Wharf Road, W2 1NY, London, UK
| | - Bas Groot Koerkamp
- Department of Surgery, Erasmus MC Cancer Institute, Doctor Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands
| | - Stephanie Roessler
- Heidelberg University, Medical Faculty, Institute of Pathology, University Hospital Heidelberg, Im Neuenheimer Feld 224, 69120, Heidelberg, Germany
| | - Jesper B. Andersen
- Biotech Research & Innovation Centre (BRIC), Department of Health and Medical Sciences, University of Copenhagen, Ole Maaløes Vej 5, Copenhagen N, DK-2200, Denmark
| | - Chiara Raggi
- Department of Experimental and Clinical Medicine, University of Florence, Cubo Centro Polivalente 2, Viale Pieraccini 6, 50139, Florence, Italy
| | - Ana Lleo
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, 20072, Pieve Emanuele, Milan, Italy
- Internal Medicine and Hepatology Unit, Department of Gastroenterology, IRCCS Humanitas Research Hospital, Via Manzoni 56, 20089, Rozzano, Milan, Italy
| | - Jean-Charles Nault
- Cordeliers Research Center, Sorbonne University, Inserm, Paris Cité University, “Functional Genomics of Solid Tumors” Team, Ligue Nationale Contre le Cancer Accredited Team, Labex OncoImmunology, 16 rue de l'École de Médecine, 75006, Paris, France
- Liver Unit, Avicenne Hospital, APHP, University Sorbonne Paris Nord, 125 Avenue de Stalingrad, 93000, Bobigny, France
| | - Julien Calderaro
- Université Paris Est Créteil, INSERM, IMRB, 61 Av. du Général de Gaulle, 94000, Créteil, France
- Department of Pathology, Assistance Publique-Hôpitaux de Paris, Henri Mondor-Albert Chenevier University Hospital, 1 Rue Gustave Eiffel, 94010, Créteil, France
- MINT-Hep, Mondor Integrative Hepatology, 1 Rue Gustave Eiffel, 94010, Créteil, France
| | - Chiara Gabbi
- Humanitas Medical Care, Via Domodossola 9/a, 20145, Milan, Italy
| | - Jakob N. Kather
- Else Kroener Fresenius Center for Digital Health, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, 01307, Dresden, Germany
- Department of Medicine I, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, 01307, Dresden, Germany
- Medical Oncology, National Center for Tumor Diseases (NCT), University Hospital Heidelberg, Im Neuenheimer Feld 224, 69120, Heidelberg, Germany
| | - Jesus M. Banales
- Department of Liver and Gastrointestinal Diseases, Biogipuzkoa Health Research Institute – Donostia University Hospital, CIBERehd, Paseo Dr. Begiristain, s/n, 20014, San Sebastian, Spain
- IKERBASQUE, Basque Foundation for Science, Euskadi Pl., 5, Abando, 48009, Bilbao, Spain
- Department of Medicine, Faculty of Medicine and Nursing, University of the Basque Country (UPV/EHU), Barrio Sarriena, s/n, 48940, Leioa, Spain
- Department of Biochemistry and Genetics, School of Sciences, University of Navarra, Calle Irunlarrea 1, 31008, Pamplona, Spain
| | - Irene Bargellini
- Department of Surgical Sciences, University of Turin, Corso Dogliotti 14, 10126, Turin, Italy
- Division of Diagnostic and Interventional Radiology, Candiolo Cancer Institute FPO-IRCCS, Strada Provinciale 142, 10060, Candiolo (TO), Italy
| | - Helen Morement
- AMMF – The Cholangiocarcinoma Charity, Enterprise House, Bassingbourn Road, Stansted, CM24 1QW, Essex, UK
| | - Marcin Krawczyk
- Department of Gastroenterology, Hepatology and Transplant Medicine, Medical Faculty, University of Duisburg-Essen, Hufelandstraße 55, 45147, Essen, Germany
- Laboratory of Metabolic Liver Diseases, Medical University of Warsaw, Banacha Street 1B, 02-097, Warsaw, Poland
| | - Paraskevi A. Farazi
- School of Medicine, European University Cyprus, 6 Diogenes Street, 2404, Engomi, Nicosia, Cyprus
| | - Guido Carpino
- Department of Anatomical, Histological, Legal Medicine and Orthopedic Sciences, Sapienza University of Rome, Via Alfonso Borelli 50, 00161, Rome, Italy
| | - Matias A. Avila
- Hepatology Laboratory, Solid Tumors Program, CIMA, IdiSNA, CIBERehd, University of Navarra, Calle Irunlarrea 1, 31008, Pamplona, Spain
| | - Anna Saborowski
- Department of Gastroenterology, Hepatology, Infectious Diseases and Endocrinology, Hannover Medical School, Carl Neuberg Str. 1, 30625, Hannover, Germany
| | - Vincenzo Cardinale
- Department of Translational and Precision Medicine, Sapienza University of Rome, Via Alfonso Borelli 50, 00161, Rome, Italy
| | - Chiara Braconi
- School of Cancer Sciences, University of Glasgow, Switchback rd, G61 1QH, Glasgow, UK
- Beatson West of Scotland Cancer Centre, 1053 Great Western rd, G12 0YN, Glasgow, UK
- CRUK Scotland Cancer Centre, G61 1BD, Glasgow, UK
| | - Rocio I.R. Macias
- Experimental Hepatology and Drug Targeting (HEVEPHARM) Group, University of Salamanca, IBSAL, CIBERehd, Campus M. Unamuno s/n, 37007, Salamanca, Spain
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Jakimów K, Tekiela N, Kozak K, Peterek R, Kwaśniewska A, Pająk J, Chudek J. Misdiagnosis Based on Neoplastic Markers-Extremely High Alpha-Fetoprotein in Patients with Intrahepatic Cholangiocarcinoma with Literature Review of the Published Cases. MEDICINA (KAUNAS, LITHUANIA) 2024; 60:1109. [PMID: 39064538 PMCID: PMC11279150 DOI: 10.3390/medicina60071109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2024] [Revised: 07/05/2024] [Accepted: 07/06/2024] [Indexed: 07/28/2024]
Abstract
Background: Alpha-fetoprotein (AFP) and carbohydrate antigen 19-9 (CA 19-9) are two tumor markers that are widely used in the differential diagnosis in patients with primary liver tumors. Very high levels of AFP are sporadically observed in patients with intrahepatic cholangiocarcinoma (ICC) and may cause an incorrect initial diagnosis of hepatocellular carcinoma (HCC). Methods: Two cases of tumors in cirrhotic livers were described, in which the initial diagnosis, based on very high AFP levels (Patient I: 10,464 ng/mL, Patient II: 2212 ng/mL, reference range: ≤8.04 ng/mL) was HCC. In addition, the PubMed database was searched for cases of ICC with elevated AFP. Discussion: In both individuals, liver cirrhosis was diagnosed, but there was no typical rapid "washout" in the contrast-enhanced computed tomography. Based on the histological assessment of samples obtained in the core biopsies, the initially assumed diagnosis of HCC was changed to ICC in both cases. Only nine cases of patients with ICC and high AFP levels were found in the PubMed database. The AFP levels ranged from slightly elevated to over 16,000 ng/mL. Conclusions: A very high AFP level does not necessarily correlate with the presence of HCC. Therefore, the diagnosis has to be verified histologically, when the radiological imaging is uncertain in patients with liver cirrhosis.
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Affiliation(s)
- Krzysztof Jakimów
- Student’s Scientific Association, Department of Internal Diseases and Oncological Chemotherapy, Medical University of Silesia, 40-055 Katowice, Poland; (N.T.); (K.K.); (R.P.)
| | - Natalia Tekiela
- Student’s Scientific Association, Department of Internal Diseases and Oncological Chemotherapy, Medical University of Silesia, 40-055 Katowice, Poland; (N.T.); (K.K.); (R.P.)
| | - Katarzyna Kozak
- Student’s Scientific Association, Department of Internal Diseases and Oncological Chemotherapy, Medical University of Silesia, 40-055 Katowice, Poland; (N.T.); (K.K.); (R.P.)
| | - Robert Peterek
- Student’s Scientific Association, Department of Internal Diseases and Oncological Chemotherapy, Medical University of Silesia, 40-055 Katowice, Poland; (N.T.); (K.K.); (R.P.)
| | - Anna Kwaśniewska
- Department of Radiology, The Mielecki Hospital, Medical University of Silesia, 40-055 Katowice, Poland;
| | - Jacek Pająk
- Department of Pathomorphology, Medical University of Silesia, 40-055 Katowice, Poland;
| | - Jerzy Chudek
- Department of Internal Medicine and Oncological Chemotherapy, Medical University of Silesia, 40-055 Katowice, Poland
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