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Yaman S, Aslan O, Güler H, Sengur A, Hafeez-Baig A, Tan RS, Deo RC, Barua PD, Acharya UR. Deep learning techniques for automated coronary artery segmentation and coronary artery disease detection: A systematic review of the last decade (2013-2024). COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2025; 268:108858. [PMID: 40408829 DOI: 10.1016/j.cmpb.2025.108858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2025] [Revised: 05/02/2025] [Accepted: 05/13/2025] [Indexed: 05/25/2025]
Abstract
BACKGROUND Coronary artery disease (CAD) is the most common cardiovascular disease, exacting high morbidity and mortality worldwide. CAD is detected on coronary artery imaging; coronary artery segmentation (CAS) of the images is essential for coronary lesion characterization. Both CAD detection and CAS require expert input, are labor-intensive, and error-prone. OBJECTIVES Deep learning (DL) techniques have achieved significant success in CAS and CAD detection, with many studies published recently. This study is an up-to-date systematic review of research on automated DL models for CAS and CAD detection in the past decade (2013-2024). METHOD Using PRISMA methodology, an initial literature search of 1,589 publications was conducted, from which 97 high-impact Q1 studies were selected based on pre-defined eligibility criteria. These studies were analyzed in terms of DL techniques employed, datasets, modalities, and performance metrics. RESULTS Of the 97 studies, most of which were published after 2016, 47 focused on CAS, 49 on CAD detection, and one on both tasks. CNN-based models were dominant in both domains. For CAS, CCTA was the most frequently used input modality, and U-Net was employed in 38 out of 48 studies, with recent works incorporating attention mechanisms and graph neural networks. ASOCA was the most widely used benchmark dataset. For CAD detection, ECG was the most common modality, with 45 out of 50 studies utilizing CNNs, and 20 of those relying purely on CNN architectures. Hybrid and multimodal models have become more prominent in recent years. CONCLUSION This review identified several challenges, including limited public datasets, variability in performance metrics, and model complexity. Future studies should focus on larger, diverse datasets and lightweight models integrating explainable artificial intelligence and uncertainty quantification to improve clinical applicability.
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Affiliation(s)
- Suleyman Yaman
- Biomedical Department, Vocational School of Technical Sciences, Firat University, Elazig, Turkey; School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, QLD 4300, Australia
| | - Ozkan Aslan
- Computer Engineering Department, Engineering Faculty, Afyon Kocatepe University, Afyonkarahisar, Turkey
| | - Hasan Güler
- Electrical-Electronics Engineering Department, Engineering Faculty, Firat University, Elazig, Turkey
| | - Abdulkadir Sengur
- Electrical-Electronics Engineering Department, Technology Faculty, Firat University, Elazig, Turkey.
| | - Abdul Hafeez-Baig
- School of Business, University of Southern Queensland, Toowoomba, QLD, Australia
| | - Ru-San Tan
- Department of Cardiology, National Heart Centre Singapore, Duke-NUS Medical School, Singapore
| | - Ravinesh C Deo
- School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, QLD 4300, Australia
| | - Prabal Datta Barua
- School of Business, University of Southern Queensland, Toowoomba, QLD, Australia
| | - U Rajendra Acharya
- School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, QLD 4300, Australia
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2
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Zhu H, Wu H, Zhang S, Fang K, Xie G, Zheng Y, Qiu J, Liu F, Miao Z, Yuan X, Chen W, He L. Fast and automatic coronary artery segmentation using nnU-Net for non-contrast enhanced magnetic resonance coronary angiography. THE INTERNATIONAL JOURNAL OF CARDIOVASCULAR IMAGING 2025:10.1007/s10554-025-03408-8. [PMID: 40287548 DOI: 10.1007/s10554-025-03408-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Accepted: 04/21/2025] [Indexed: 04/29/2025]
Abstract
Non-contrast enhanced magnetic resonance coronary angiography (MRCA) is a promising coronary heart disease screening modality. However, its clinical application is hindered by inherent limitations, including low spatial resolution and insufficient contrast between coronary arteries and surrounding tissues. These technical challenges impede fast and automatic coronary artery segmentation. To tackle these issues, we propose a self-configuring deep learning-based approach for automating the segmentation of coronary arteries in MRCA images. The nnU-Net model was trained on MRCA data from 134 subjects and tested on data from 114 subjects. Two radiologists qualitatively evaluated all segmented arteries as good to excellent. Using coronary computed tomography angiography (CCTA) data from the 114 tested subjects as the gold standard. Specifically, we compared the number of branches, the total branch length, and the distance from the base of the coronary sinus to the origin of the corresponding main coronary artery obtained from manual and artificial intelligence measurements in MRCA images with those obtained from CCTA. Experiment results demonstrated that in validation nnU-Net can accurately segment from MRCA images with the Dice score of 0.903 and 0.962 for major coronary arteries and aorta, respectively.In Testing, nnU-Net achieved the Dice score of 0.726 and 0.890 for major coronary arteries and aorta, respectively. Integrating MRCA with nnU-Net to extract coronary arteries offers a non-invasive screening tool for the detection of coronary heart disease, potentially enhancing early detection and reducing reliance from CCTA.
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Affiliation(s)
- Huiming Zhu
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Huizhong Wu
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Shike Zhang
- The Sixth People's Hospital of Huizhou, Huizhou, China.
| | - Kuaifa Fang
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Guoxi Xie
- Guangzhou Medical University, Guangzhou, China
| | - Yekun Zheng
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Jinxing Qiu
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Feng Liu
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Zhenmin Miao
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | | | - Weibo Chen
- The Sixth People's Hospital of Huizhou, Huizhou, China
| | - Lincheng He
- The Sixth People's Hospital of Huizhou, Huizhou, China
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3
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Kumari V, Katiyar A, Bhagawati M, Maindarkar M, Gupta S, Paul S, Chhabra T, Boi A, Tiwari E, Rathore V, Singh IM, Al-Maini M, Anand V, Saba L, Suri JS. Transformer and Attention-Based Architectures for Segmentation of Coronary Arterial Walls in Intravascular Ultrasound: A Narrative Review. Diagnostics (Basel) 2025; 15:848. [PMID: 40218198 PMCID: PMC11988294 DOI: 10.3390/diagnostics15070848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Revised: 03/08/2025] [Accepted: 03/20/2025] [Indexed: 04/14/2025] Open
Abstract
Background: The leading global cause of death is coronary artery disease (CAD), necessitating early and precise diagnosis. Intravascular ultrasound (IVUS) is a sophisticated imaging technique that provides detailed visualization of coronary arteries. However, the methods for segmenting walls in the IVUS scan into internal wall structures and quantifying plaque are still evolving. This study explores the use of transformers and attention-based models to improve diagnostic accuracy for wall segmentation in IVUS scans. Thus, the objective is to explore the application of transformer models for wall segmentation in IVUS scans to assess their inherent biases in artificial intelligence systems for improving diagnostic accuracy. Methods: By employing the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) framework, we pinpointed and examined the top strategies for coronary wall segmentation using transformer-based techniques, assessing their traits, scientific soundness, and clinical relevancy. Coronary artery wall thickness is determined by using the boundaries (inner: lumen-intima and outer: media-adventitia) through cross-sectional IVUS scans. Additionally, it is the first to investigate biases in deep learning (DL) systems that are associated with IVUS scan wall segmentation. Finally, the study incorporates explainable AI (XAI) concepts into the DL structure for IVUS scan wall segmentation. Findings: Because of its capacity to automatically extract features at numerous scales in encoders, rebuild segmented pictures via decoders, and fuse variations through skip connections, the UNet and transformer-based model stands out as an efficient technique for segmenting coronary walls in IVUS scans. Conclusions: The investigation underscores a deficiency in incentives for embracing XAI and pruned AI (PAI) models, with no UNet systems attaining a bias-free configuration. Shifting from theoretical study to practical usage is crucial to bolstering clinical evaluation and deployment.
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Affiliation(s)
- Vandana Kumari
- School of Computer Science and Engineering, Galgotias University, Greater Noida 201310, India; (V.K.); (A.K.)
| | - Alok Katiyar
- School of Computer Science and Engineering, Galgotias University, Greater Noida 201310, India; (V.K.); (A.K.)
| | - Mrinalini Bhagawati
- Department of Biomedical Engineering, North Eastern Hill University, Shillong 793022, India; (M.B.); (S.P.)
| | - Mahesh Maindarkar
- School of Bioengineering Research and Sciences, MIT Art, Design and Technology University, Pune 412021, India;
| | - Siddharth Gupta
- Department of Computer Science and Engineering, Bharati Vidyapeeth’s College of Engineering, New Delhi 110063, India;
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA; (V.R.); (I.M.S.); (V.A.)
| | - Sudip Paul
- Department of Biomedical Engineering, North Eastern Hill University, Shillong 793022, India; (M.B.); (S.P.)
| | - Tisha Chhabra
- Department of Information Technology, Bharati Vidyapeeth’s College of Engineering, New Delhi 110063, India;
| | - Alberto Boi
- Department of Cardiology, University of Cagliari, 09124 Cagliari, Italy; (A.B.); (L.S.)
| | - Ekta Tiwari
- Department of Computer Science, Visvesvaraya National Institute of Technology (VNIT), Nagpur 440010, India;
| | - Vijay Rathore
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA; (V.R.); (I.M.S.); (V.A.)
| | - Inder M. Singh
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA; (V.R.); (I.M.S.); (V.A.)
| | - Mustafa Al-Maini
- Allergy, Clinical Immunology and Rheumatology Institute, Toronto, ON M5G 1N8, Canada;
| | - Vinod Anand
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA; (V.R.); (I.M.S.); (V.A.)
| | - Luca Saba
- Department of Cardiology, University of Cagliari, 09124 Cagliari, Italy; (A.B.); (L.S.)
| | - Jasjit S. Suri
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA; (V.R.); (I.M.S.); (V.A.)
- Department of Electrical and Computer Engineering, Idaho State University, Pocatello, ID 83209, USA
- Department of Computer Engineering, Graphic Era Deemed to be University, Dehradun 248002, India
- Symbiosis Institute of Technology, Nagpur Campus, Symbiosis International (Deemed University), Pune 440008, India
- University Centre for Research & Development, Chandigarh University, Mohali 140413, India
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4
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Colombo A, Chiastra C, Gallo D, Loh PH, Dokos S, Zhang M, Keramati H, Carbonaro D, Migliavacca F, Ray T, Jepson N, Beier S. Advancements in Coronary Bifurcation Stenting Techniques: Insights From Computational and Bench Testing Studies. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2025; 41:e70000. [PMID: 40087854 PMCID: PMC11909422 DOI: 10.1002/cnm.70000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 11/28/2024] [Accepted: 01/11/2025] [Indexed: 03/17/2025]
Abstract
Coronary bifurcation lesions present complex challenges in interventional cardiology, necessitating effective stenting techniques to achieve optimal results. This literature review comprehensively examines the application of computational and bench testing methods in coronary bifurcation stenting, offering insights into procedural aspects, stent design considerations, and patient-specific characteristics. Structural mechanics finite element analysis, computational fluid dynamics, and multi-objective optimization are valuable tools for evaluating stenting strategies, including provisional side branch stenting and two-stenting techniques. We highlight the impact of procedural factors, such as balloon positioning and rewiring techniques, and stent design features on the outcome of percutaneous coronary interventions with stents. We discuss the importance of patient-specific characteristics in deployment strategies, such as bifurcation angle and plaque properties. This understanding informs present and future research and clinical practice on bifurcation stenting. Computational simulations are a continuously maturing advance that has significantly enhanced stenting devices and techniques for coronary bifurcation lesions over the years. However, the accurate account of patient-specific vessel and lesion characteristics, both in terms of anatomical and accurate physiological behavior, and their large variation between patients, remains a significant challenge in the field. In this context, advancements in multi-objective optimization offer significant opportunities for refining stent design and procedural practices.
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Affiliation(s)
- Andrea Colombo
- Sydney Vascular Modelling Group, School of Mechanical and Manufacturing EngineeringUniversity of New South WalesSydneyNew South WalesAustralia
| | - Claudio Chiastra
- PolitoBIOMed Lab, Department of Mechanical and Aerospace EngineeringPolitecnico di TorinoTurinItaly
| | - Diego Gallo
- PolitoBIOMed Lab, Department of Mechanical and Aerospace EngineeringPolitecnico di TorinoTurinItaly
| | - Poay Huan Loh
- Department of Cardiology, National University Heart CentreNational University Health SystemSingaporeSingapore
- Yong Loo Lin School of MedicineNational University of SingaporeSingaporeSingapore
| | - Socrates Dokos
- Graduate School of Biomedical EngineeringUniversity of New South WalesSydneyNew South WalesAustralia
| | - Mingzi Zhang
- Sydney Vascular Modelling Group, School of Mechanical and Manufacturing EngineeringUniversity of New South WalesSydneyNew South WalesAustralia
| | - Hamed Keramati
- Sydney Vascular Modelling Group, School of Mechanical and Manufacturing EngineeringUniversity of New South WalesSydneyNew South WalesAustralia
| | - Dario Carbonaro
- PolitoBIOMed Lab, Department of Mechanical and Aerospace EngineeringPolitecnico di TorinoTurinItaly
| | - Francesco Migliavacca
- Department of Chemistry, Material and Chemical EngineeringPolitecnico di MilanoMilanItaly
| | - Tapabrata Ray
- School of Engineering and TechnologyUniversity of New South WalesCanberraAustralian Capital TerritoryAustralia
| | - Nigel Jepson
- Prince of Wales Clinical School of MedicineUniversity of New South WalesSydneyNew South WalesAustralia
- Department of CardiologyPrince of Wales HospitalSydneyNew South WalesAustralia
| | - Susann Beier
- Sydney Vascular Modelling Group, School of Mechanical and Manufacturing EngineeringUniversity of New South WalesSydneyNew South WalesAustralia
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5
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Serafini E, Martino A, Sangiorgio E, Bovetti M, Corti A, Fallon BC, Willson RC, Gallo D, Chiastra C, Li XC, Filgueira CS, Casarin S. Investigating the relationship between geometry and hemodynamics in an experimentally derived murine coronary computational model. Comput Biol Med 2025; 187:109793. [PMID: 39938341 DOI: 10.1016/j.compbiomed.2025.109793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Revised: 01/29/2025] [Accepted: 01/31/2025] [Indexed: 02/14/2025]
Abstract
Despite the critical role of coronary morphology and hemodynamics in the development of coronary artery disease (CAD), comprehensive analyses of these factors in murine models are limited. Our study integrates in vivo approaches with computational methods to yield a complete set of precise and reliable morphologic and hemodynamic measurements and to investigate their interrelationship in the left coronary artery of healthy C57BL/6 mice. The work utilizes advanced micro-computed tomography imaging, enhanced with Microfil® coronary perfusion, complemented by morphometric analysis and computational fluid dynamic simulation. Our results in murine coronary arteries show: i) bifurcations are the most geometrically complex regions, susceptible to disturbed hemodynamics and, consequently, endothelial dysfunction; ii) vascular endothelial cells experience wall shear stress (WSS) an order of magnitude greater than in humans, primarily due to their smaller size, although minimal WSS multi-directionality is noted in both species; iii) intravascular flow exhibits reduced helical patterns compared to human coronaries, indicating a need for further investigation into their potential protective role against disease onset; and iv) strong correlations between geometric and hemodynamic indices highlight the need to integrate these factors for a comprehensive understanding of CAD initiation and progression in preclinical models. Thus, to optimize research based on murine models, it is essential not only to move beyond idealized geometries, but also to avoid uncritically relying on hemodynamic measurements from different species. This study grounds future development of mouse-specific predictive models of CAD, a critical step toward advancing translational research to understand and prevent CAD in humans.
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Affiliation(s)
- Elisa Serafini
- Center for Precision Surgery, Houston Methodist Research Institute, Houston, TX, 77030, USA; LaSIE, UMR 7356, CNRS, La Rochelle Université, La Rochelle, 17000, France
| | - Antonio Martino
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA; Department of Material Science and Engineering, University of Houston, Houston, TX, 77204, USA
| | - Enrico Sangiorgio
- Center for Precision Surgery, Houston Methodist Research Institute, Houston, TX, 77030, USA; Polito(BIO)Med Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, 10129, Italy
| | - Maddalena Bovetti
- Center for Precision Surgery, Houston Methodist Research Institute, Houston, TX, 77030, USA; Polito(BIO)Med Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, 10129, Italy
| | - Anna Corti
- Department of Electronics, Information and Bioengineering, Polytechnic of Milan, Milan, 20133, Italy
| | - Blake C Fallon
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA
| | - Richard C Willson
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX, 77204, USA
| | - Diego Gallo
- Polito(BIO)Med Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, 10129, Italy
| | - Claudio Chiastra
- Polito(BIO)Med Lab, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, 10129, Italy
| | - Xian C Li
- Immunobiology and Transplant Science Center, Houston Methodist Research Institute, Houston, TX, 77030, USA; Department of Surgery, Houston Methodist Hospital, Houston, TX, 77030, USA
| | - Carly S Filgueira
- Department of Nanomedicine, Houston Methodist Research Institute, Houston, TX, 77030, USA; Department of Cardiovascular Surgery, Houston Methodist Research Institute, Houston, TX, 77030, USA; Department of Nanomedicine in Cardiothoracic Surgery, Weill Cornell Medicine, New York, NY, 10021, USA
| | - Stefano Casarin
- Center for Precision Surgery, Houston Methodist Research Institute, Houston, TX, 77030, USA; LaSIE, UMR 7356, CNRS, La Rochelle Université, La Rochelle, 17000, France; Department of Surgery, Houston Methodist Hospital, Houston, TX, 77030, USA.
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6
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Yang X, Xu L, Yu S, Xia Q, Li H, Zhang S. Segmentation and Vascular Vectorization for Coronary Artery by Geometry-Based Cascaded Neural Network. IEEE TRANSACTIONS ON MEDICAL IMAGING 2025; 44:259-269. [PMID: 39078771 DOI: 10.1109/tmi.2024.3435714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/05/2025]
Abstract
Segmentation of the coronary artery is an important task for the quantitative analysis of coronary computed tomography angiography (CCTA) images and is being stimulated by the field of deep learning. However, the complex structures with tiny and narrow branches of the coronary artery bring it a great challenge. Coupled with the medical image limitations of low resolution and poor contrast, fragmentations of segmented vessels frequently occur in the prediction. Therefore, a geometry-based cascaded segmentation method is proposed for the coronary artery, which has the following innovations: 1) Integrating geometric deformation networks, we design a cascaded network for segmenting the coronary artery and vectorizing results. The generated meshes of the coronary artery are continuous and accurate for twisted and sophisticated coronary artery structures, without fragmentations. 2) Different from mesh annotations generated by the traditional marching cube method from voxel-based labels, a finer vectorized mesh of the coronary artery is reconstructed with the regularized morphology. The novel mesh annotation benefits the geometry-based segmentation network, avoiding bifurcation adhesion and point cloud dispersion in intricate branches. 3) A dataset named CCA-200 is collected, consisting of 200 CCTA images with coronary artery disease. The ground truths of 200 cases are coronary internal diameter annotations by professional radiologists. Extensive experiments verify our method on our collected dataset CCA-200 and public ASOCA dataset, with a Dice of 0.778 on CCA-200 and 0.895 on ASOCA, showing superior results. Especially, our geometry-based model generates an accurate, intact and smooth coronary artery, devoid of any fragmentations of segmented vessels.
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7
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Belec J, Sutherland J, Volpini M, Rakhra K, Granville D, La Russa D, Flaxman T, De Oliveira EP, Glikstein R, Dos Santos MP, Werier J, MacPherson M, Aviv RI, Nair V. A Pilot Clinical and Technical Validation of an Immersive Virtual Reality Platform for 3D Anatomical Modeling and Contouring in Support of Surgical and Radiation Oncology Treatment Planning. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024; 37:3009-3024. [PMID: 38831190 PMCID: PMC11612127 DOI: 10.1007/s10278-024-01048-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 12/04/2023] [Accepted: 12/07/2023] [Indexed: 06/05/2024]
Abstract
The aim of this study was to validate a novel medical virtual reality (VR) platform used for medical image segmentation and contouring in radiation oncology and 3D anatomical modeling and simulation for planning medical interventions, including surgery. The first step of the validation was to verify quantitatively and qualitatively that the VR platform can produce substantially equivalent 3D anatomical models, image contours, and measurements to those generated with existing commercial platforms. To achieve this, a total of eight image sets and 18 structures were segmented using both VR and reference commercial platforms. The image sets were chosen to cover a broad range of scanner manufacturers, modalities, and voxel dimensions. The second step consisted of evaluating whether the VR platform could provide efficiency improvements for target delineation in radiation oncology planning. To assess this, the image sets for five pediatric patients with resected standard-risk medulloblastoma were used to contour target volumes in support of treatment planning of craniospinal irradiation, requiring complete inclusion of the entire cerebral-spinal volume. Structures generated in the VR and the commercial platforms were found to have a high degree of similarity, with dice similarity coefficient ranging from 0.963 to 0.985 for high-resolution images and 0.920 to 0.990 for lower resolution images. Volume, cross-sectional area, and length measurements were also found to be in agreement with reference values derived from a commercial system, with length measurements having a maximum difference of 0.22 mm, angle measurements having a maximum difference of 0.04°, and cross-sectional area measurements having a maximum difference of 0.16 mm2. The VR platform was also found to yield significant efficiency improvements, reducing the time required to delineate complex cranial and spinal target volumes by an average of 50% or 29 min.
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Affiliation(s)
- Jason Belec
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada.
| | - Justin Sutherland
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
- Realize Medical Inc., Ottawa, Canada
| | - Matthew Volpini
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Kawan Rakhra
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Dal Granville
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Dan La Russa
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
- Realize Medical Inc., Ottawa, Canada
| | - Teresa Flaxman
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
- Department of Obstetrics and Gynecology, University of Ottawa, Ottawa, Canada
| | | | - Rafael Glikstein
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Marlise P Dos Santos
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Joel Werier
- Department of Surgery, University of Ottawa, Ottawa, Canada
| | - Miller MacPherson
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Richard I Aviv
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
| | - Vimoj Nair
- Department of Radiology, Radiation Oncology and Medical Physics, University of Ottawa, Ottawa, Canada
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8
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Becker LM, Peper J, van Nes SH, van Es HW, Sjauw KD, van de Hoef TP, Leiner T, Swaans MJ. Non-invasive physiological assessment of coronary artery obstruction on coronary computed tomography angiography. Neth Heart J 2024; 32:397-404. [PMID: 39373810 PMCID: PMC11502690 DOI: 10.1007/s12471-024-01902-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/27/2024] [Indexed: 10/08/2024] Open
Abstract
Computed tomography-derived fractional flow reserve (CT-FFR) enhances the specificity of coronary computed tomography angiography (CCTA) to that of the most specific non-invasive imaging techniques, while maintaining high sensitivity in stable coronary artery disease (CAD). As gatekeeper for invasive coronary angiography (ICA), use of CT-FFR results in a significant reduction of negative ICA procedures and associated costs and complications, without increasing cardiovascular events. It is expected that CT-FFR algorithms will continue to improve, regarding accuracy and generalisability, and that introduction of new features will allow further treatment guidance and reduced invasive diagnostic testing. Advancements in CCTA quality and artificial intelligence (AI) are starting to unfold the incremental diagnostic and prognostic capabilities of CCTA's attenuation-based images in CAD, with future perspectives promising additional CCTA parameters which will enable non-invasive assessment of myocardial ischaemia as well as CAD activity and future cardiovascular risk. This review discusses practical application, interpretation and impact of CT-FFR on patient care, and how this ties into the CCTA 'one stop shop' for coronary assessment and patient prognosis. In this light, selective adoption of the most promising, objective and reproducible techniques and algorithms will yield maximal diagnostic value of CCTA without overcomplicating patient management and guideline recommendations.
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Affiliation(s)
- Leonie M Becker
- Department of Cardiology, St. Antonius Hospital, Nieuwegein, The Netherlands.
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands.
| | - Joyce Peper
- Department of Cardiology, St. Antonius Hospital, Nieuwegein, The Netherlands
| | - Sophie H van Nes
- Department of Cardiology, St. Antonius Hospital, Nieuwegein, The Netherlands
| | - Hendrik W van Es
- Department of Radiology, St. Antonius Hospital, Nieuwegein, The Netherlands
| | - Krischan D Sjauw
- Department of Cardiology, St. Antonius Hospital, Nieuwegein, The Netherlands
| | - Tim P van de Hoef
- Department of Cardiology, University Medical Centre Utrecht, Utrecht, The Netherlands
| | - Tim Leiner
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
- Department of Radiology, Mayo Clinics, Rochester, MN, USA
| | - Martin J Swaans
- Department of Cardiology, St. Antonius Hospital, Nieuwegein, The Netherlands
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9
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Wu Q, Chen Y, Liu W, Yue X, Zhuang X. Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:3990-4003. [PMID: 38801688 DOI: 10.1109/tmi.2024.3405982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Accurately segmenting tubular structures, such as blood vessels or nerves, holds significant clinical implications across various medical applications. However, existing methods often exhibit limitations in achieving satisfactory topological performance, particularly in terms of preserving connectivity. To address this challenge, we propose a novel deep-learning approach, termed Deep Closing, inspired by the well-established classic closing operation. Deep Closing first leverages an AutoEncoder trained in the Masked Image Modeling (MIM) paradigm, enhanced with digital topology knowledge, to effectively learn the inherent shape prior of tubular structures and indicate potential disconnected regions. Subsequently, a Simple Components Erosion module is employed to generate topology-focused outcomes, which refines the preceding segmentation results, ensuring all the generated regions are topologically significant. To evaluate the efficacy of Deep Closing, we conduct comprehensive experiments on 4 datasets: DRIVE, CHASE_DB1, DCA1, and CREMI. The results demonstrate that our approach yields considerable improvements in topological performance compared with existing methods. Furthermore, Deep Closing exhibits the ability to generalize and transfer knowledge from external datasets, showcasing its robustness and adaptability. The code for this paper has been available at: https://github.com/5k5000/DeepClosing.
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10
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Shakeri S, Almasganj F. Online tree-structure-constrained RPCA for background subtraction of X-ray coronary angiography images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 258:108463. [PMID: 39531809 DOI: 10.1016/j.cmpb.2024.108463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 12/27/2023] [Accepted: 10/11/2024] [Indexed: 11/16/2024]
Abstract
BACKGROUND AND OBJECTIVE Background subtraction of X-ray coronary angiograms (XCA) can significantly improve the diagnosis and treatment of coronary vessel diseases. The XCA background is complex and dynamic due to structures with different intensities and independent motion patterns, making XCA background subtraction challenging. METHODS The current work proposes an online tree-structure-constrained robust PCA (OTS-RPCA) method to subtract the XCA background. A morphological closing operation is used as a pre-processing step to remove large-scale structures like the spine, chest and diaphragm. In the following, the XCA sequence is decomposed into three different subspaces: low-rank background, residual dynamic background and vascular foreground. A tree-structured norm is introduced and applied to the vascular submatrix to guarantee the vessel spatial coherency. Moreover, the residual dynamic background is separately extracted to remove noise and motion artifacts from the vascular foreground. The proposed algorithm also employs an adaptive regularization coefficient that tracks the vessel area changes in the XCA frames. RESULTS The proposed method is evaluated on two datasets of real clinical and synthetic low-contrast XCA sequences of 38 patients using the global and local contrast-to-noise ratio (CNR) and structural similarity index (SSIM) criteria. For the real XCA dataset, the average values of global CNR, local CNR and SSIM are 6.27, 3.07 and 0.97, while these values over the synthetic low-contrast dataset are obtained as 5.15, 2.69 and 0.94, respectively. The implemented quantitative and qualitative experiments verify the superiority of the proposed method over seven selected state-of-the-art methods in increasing the coronary vessel contrast and preserving the vessel structure. CONCLUSIONS The proposed OTS-RPCA background subtraction method accurately subtracts backgrounds from XCA images. Our method might provide the basis for reducing the contrast agent dose and the number of needed injections in coronary interventions.
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Affiliation(s)
- Saeid Shakeri
- Department of Biomedical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran
| | - Farshad Almasganj
- Department of Biomedical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran.
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11
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Tu L, Deng Y, Chen Y, Luo Y. Accuracy of deep learning in the differential diagnosis of coronary artery stenosis: a systematic review and meta-analysis. BMC Med Imaging 2024; 24:243. [PMID: 39285323 PMCID: PMC11403958 DOI: 10.1186/s12880-024-01403-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 08/19/2024] [Indexed: 09/20/2024] Open
Abstract
BACKGROUND In recent years, as deep learning has received widespread attention in the field of heart disease, some studies have explored the potential of deep learning based on coronary angiography (CAG) or coronary CT angiography (CCTA) images in detecting the extent of coronary artery stenosis. However, there is still a lack of a systematic understanding of its diagnostic accuracy, impeding the advancement of intelligent diagnosis of coronary artery stenosis. Therefore, we conducted this study to review the accuracy of image-based deep learning in detecting coronary artery stenosis. METHODS We retrieved PubMed, Cochrane, Embase, and Web of Science until April 11, 2023. The risk of bias in the included studies was appraised using the QUADAS-2 tool. We extracted the accuracy of deep learning in the test set and performed subgroup analyses by binary and multiclass classification scenarios. We performed a subgroup analysis based on different degrees of stenosis and applied a double arcsine transformation to process the data. The analysis was done by using R. RESULTS Our systematic review finally included 18 studies, involving 3568 patients and 13,362 images. In the included studies, deep learning models were constructed based on CAG and CCTA. In binary classification tasks, the accuracy for detecting > 25%, > 50% and > 70% degrees of stenosis at the vessel level were 0.81 (95% CI: 0.71-0.85), 0.73 (95% CI: 0.58-0.88) and 0.61 (95% CI: 0.56-0.65), respectively. In multiclass classification tasks, the accuracy for detecting 0-25%, 25-50%, 50-70%, and 70-100% degrees of stenosis at the vessel level were 0.78 (95% CI: 0.73-0.84), 0.86 (95% CI: 0.78-0.93), 0.83 (95% CI: 0.70-0.97), and 0.70 (95% CI: 0.42-0.98), respectively. CONCLUSIONS Our study shows that deep learning models based on CAG and CCTA appear to be relatively accurate in diagnosing different degrees of coronary artery stenosis. However, for various degrees of stenosis, their accuracy still needs to be further improved.
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Affiliation(s)
- Li Tu
- Department of Cardiovascular Diseases, The First Branch, The First Affiliated Hospital of Chongqing Medical University, No. 191 Renmin Road, Yuzhong District, Chongqing, 400012, China.
| | - Ying Deng
- Department of Cardiovascular Diseases, The First Branch, The First Affiliated Hospital of Chongqing Medical University, No. 191 Renmin Road, Yuzhong District, Chongqing, 400012, China
| | - Yun Chen
- Department of Cardiovascular Diseases, The First Branch, The First Affiliated Hospital of Chongqing Medical University, No. 191 Renmin Road, Yuzhong District, Chongqing, 400012, China
| | - Yi Luo
- Department of Cardiovascular Diseases, The First Branch, The First Affiliated Hospital of Chongqing Medical University, No. 191 Renmin Road, Yuzhong District, Chongqing, 400012, China
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12
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Qiu D, Ju J, Ren S, Zhang T, Tu H, Tan X, Xie F. A deep learning-based cascade algorithm for pancreatic tumor segmentation. Front Oncol 2024; 14:1328146. [PMID: 39169945 PMCID: PMC11335681 DOI: 10.3389/fonc.2024.1328146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 07/08/2024] [Indexed: 08/23/2024] Open
Abstract
Pancreatic tumors are small in size, diverse in shape, and have low contrast and high texture similarity with surrounding tissue. As a result, the segmentation model is easily confused by complex and changeable background information, leading to inaccurate positioning of small targets and false positives and false negatives. Therefore, we design a cascaded pancreatic tumor segmentation algorithm. In the first stage, we use a general multi-scale U-Net to segment the pancreas, and we exploit a multi-scale segmentation network based on non-local localization and focusing modules to segment pancreatic tumors in the second stage. The non-local localization module learns channel and spatial position information, searches for the approximate area where the pancreatic tumor is located from a global perspective, and obtains the initial segmentation results. The focusing module conducts context exploration based on foreground features (or background features), detects and removes false positive (or false negative) interference, and obtains more accurate segmentation results based on the initial segmentation. In addition, we design a new loss function to alleviate the insensitivity to small targets. Experimental results show that the proposed algorithm can more accurately locate pancreatic tumors of different sizes, and the Dice coefficient outperforms the existing state-of-the-art segmentation model. The code will be available at https://github.com/HeyJGJu/Pancreatic-Tumor-SEG.
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Affiliation(s)
- Dandan Qiu
- School of Information Science and Technology, Northwest University, Xi’an, Shaanxi, China
| | - Jianguo Ju
- School of Information Science and Technology, Northwest University, Xi’an, Shaanxi, China
| | - Shumin Ren
- School of Information Science and Technology, Northwest University, Xi’an, Shaanxi, China
| | - Tongtong Zhang
- School of Information Science and Technology, Northwest University, Xi’an, Shaanxi, China
| | - Huijuan Tu
- Department of Radiology, Kunshan Hospital of Chinese Medicine, Kunshan, Jiangsu, China
| | - Xin Tan
- School of Information Science and Technology, Northwest University, Xi’an, Shaanxi, China
| | - Fei Xie
- College of Computer Science and Technology, Xidian University, Xi’an, Shaanxi, China
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13
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Alirr OI, Al-Absi HRH, Ashtaiwi A, Khalifa T. Efficient Extraction of Coronary Artery Vessels from Computed Tomography Angiography Images Using ResUnet and Vesselness. Bioengineering (Basel) 2024; 11:759. [PMID: 39199717 PMCID: PMC11351848 DOI: 10.3390/bioengineering11080759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 07/19/2024] [Accepted: 07/22/2024] [Indexed: 09/01/2024] Open
Abstract
Accurate and efficient segmentation of coronary arteries from CTA images is crucial for diagnosing and treating cardiovascular diseases. This study proposes a structured approach that combines vesselness enhancement, heart region of interest (ROI) extraction, and the ResUNet deep learning method to accurately and efficiently extract coronary artery vessels. Vesselness enhancement and heart ROI extraction significantly improve the accuracy and efficiency of the segmentation process, while ResUNet enables the model to capture both local and global features. The proposed method outperformed other state-of-the-art methods, achieving a Dice similarity coefficient (DSC) of 0.867, a Recall of 0.881, and a Precision of 0.892. The exceptional results for segmenting coronary arteries from CTA images demonstrate the potential of this method to significantly contribute to accurate diagnosis and effective treatment of cardiovascular diseases.
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Affiliation(s)
- Omar Ibrahim Alirr
- College of Engineering and Technology, American University of the Middle East, Egaila 54200, Kuwait (T.K.)
| | - Hamada R. H. Al-Absi
- College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar
| | - Abduladhim Ashtaiwi
- College of Engineering and Technology, American University of the Middle East, Egaila 54200, Kuwait (T.K.)
| | - Tarek Khalifa
- College of Engineering and Technology, American University of the Middle East, Egaila 54200, Kuwait (T.K.)
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14
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Pascaner AF, Rosato A, Fantazzini A, Vincenzi E, Basso C, Secchi F, Lo Rito M, Conti M. Automatic 3D Segmentation and Identification of Anomalous Aortic Origin of the Coronary Arteries Combining Multi-view 2D Convolutional Neural Networks. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024; 37:884-891. [PMID: 38343261 PMCID: PMC11031525 DOI: 10.1007/s10278-023-00950-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/18/2023] [Accepted: 10/29/2023] [Indexed: 04/20/2024]
Abstract
This work aimed to automatically segment and classify the coronary arteries with either normal or anomalous origin from the aorta (AAOCA) using convolutional neural networks (CNNs), seeking to enhance and fasten clinician diagnosis. We implemented three single-view 2D Attention U-Nets with 3D view integration and trained them to automatically segment the aortic root and coronary arteries of 124 computed tomography angiographies (CTAs), with normal coronaries or AAOCA. Furthermore, we automatically classified the segmented geometries as normal or AAOCA using a decision tree model. For CTAs in the test set (n = 13), we obtained median Dice score coefficients of 0.95 and 0.84 for the aortic root and the coronary arteries, respectively. Moreover, the classification between normal and AAOCA showed excellent performance with accuracy, precision, and recall all equal to 1 in the test set. We developed a deep learning-based method to automatically segment and classify normal coronary and AAOCA. Our results represent a step towards an automatic screening and risk profiling of patients with AAOCA, based on CTA.
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Affiliation(s)
- Ariel Fernando Pascaner
- Department of Civil Engineering and Architecture, University of Pavia, Via Adolfo Ferrata 3, 27100, Pavia, Italy
| | - Antonio Rosato
- 3D and Computer Simulation Laboratory, IRCCS Policlinico San Donato, Piazza Edmondo Malan 2, 20097, San Donato Milanese, Italy
| | - Alice Fantazzini
- Camelot Biomedical Systems S.r.l., Via Al Ponte Reale 2/20, 16124, Genoa, Italy
| | - Elena Vincenzi
- Camelot Biomedical Systems S.r.l., Via Al Ponte Reale 2/20, 16124, Genoa, Italy
| | - Curzio Basso
- Camelot Biomedical Systems S.r.l., Via Al Ponte Reale 2/20, 16124, Genoa, Italy
| | - Francesco Secchi
- Unit of Radiology, IRCCS Policlinico San Donato, Piazza Edmondo Malan 2, 20097, San Donato Milanese, Italy
| | - Mauro Lo Rito
- Department of Congenital Cardiac Surgery, IRCCS Policlinico San Donato, Piazza Edmondo Malan 2, 20097, San Donato Milanese, Italy
| | - Michele Conti
- Department of Civil Engineering and Architecture, University of Pavia, Via Adolfo Ferrata 3, 27100, Pavia, Italy.
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15
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Zhang X, Sun K, Wu D, Xiong X, Liu J, Yao L, Li S, Wang Y, Feng J, Shen D. An Anatomy- and Topology-Preserving Framework for Coronary Artery Segmentation. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:723-733. [PMID: 37756173 DOI: 10.1109/tmi.2023.3319720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/29/2023]
Abstract
Coronary artery segmentation is critical for coronary artery disease diagnosis but challenging due to its tortuous course with numerous small branches and inter-subject variations. Most existing studies ignore important anatomical information and vascular topologies, leading to less desirable segmentation performance that usually cannot satisfy clinical demands. To deal with these challenges, in this paper we propose an anatomy- and topology-preserving two-stage framework for coronary artery segmentation. The proposed framework consists of an anatomical dependency encoding (ADE) module and a hierarchical topology learning (HTL) module for coarse-to-fine segmentation, respectively. Specifically, the ADE module segments four heart chambers and aorta, and thus five distance field maps are obtained to encode distance between chamber surfaces and coarsely segmented coronary artery. Meanwhile, ADE also performs coronary artery detection to crop region-of-interest and eliminate foreground-background imbalance. The follow-up HTL module performs fine segmentation by exploiting three hierarchical vascular topologies, i.e., key points, centerlines, and neighbor connectivity using a multi-task learning scheme. In addition, we adopt a bottom-up attention interaction (BAI) module to integrate the feature representations extracted across hierarchical topologies. Extensive experiments on public and in-house datasets show that the proposed framework achieves state-of-the-art performance for coronary artery segmentation.
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16
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Xu B, Yang J, Hong P, Fan X, Sun Y, Zhang L, Yang B, Xu L, Avolio A. Coronary artery segmentation in CCTA images based on multi-scale feature learning. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2024; 32:973-991. [PMID: 38943423 DOI: 10.3233/xst-240093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/01/2024]
Abstract
BACKGROUND Coronary artery segmentation is a prerequisite in computer-aided diagnosis of Coronary Artery Disease (CAD). However, segmentation of coronary arteries in Coronary Computed Tomography Angiography (CCTA) images faces several challenges. The current segmentation approaches are unable to effectively address these challenges and existing problems such as the need for manual interaction or low segmentation accuracy. OBJECTIVE A Multi-scale Feature Learning and Rectification (MFLR) network is proposed to tackle the challenges and achieve automatic and accurate segmentation of coronary arteries. METHODS The MFLR network introduces a multi-scale feature extraction module in the encoder to effectively capture contextual information under different receptive fields. In the decoder, a feature correction and fusion module is proposed, which employs high-level features containing multi-scale information to correct and guide low-level features, achieving fusion between the two-level features to further improve segmentation performance. RESULTS The MFLR network achieved the best performance on the dice similarity coefficient, Jaccard index, Recall, F1-score, and 95% Hausdorff distance, for both in-house and public datasets. CONCLUSION Experimental results demonstrate the superiority and good generalization ability of the MFLR approach. This study contributes to the accurate diagnosis and treatment of CAD, and it also informs other segmentation applications in medicine.
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Affiliation(s)
- Bu Xu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Jinzhong Yang
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Peng Hong
- Software College, Northeastern University, Shenyang, China
| | - Xiaoxue Fan
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Yu Sun
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Department of Radiology, General Hospital of North Theater Command, Shenyang, China
| | - Libo Zhang
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Department of Radiology, General Hospital of North Theater Command, Shenyang, China
| | - Benqiang Yang
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Department of Radiology, General Hospital of North Theater Command, Shenyang, China
| | - Lisheng Xu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Key Laboratory of Medical Image Computing, Ministry of Education, Shenyang, China
- Engineering Research Center of Medical Imaging and Intelligent Analysis, Ministry of Education, Shenyang, China
| | - Alberto Avolio
- Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, Australia
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17
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Semi-supervised segmentation of coronary DSA using mixed networks and multi-strategies. Comput Biol Med 2023; 156:106493. [PMID: 36893708 DOI: 10.1016/j.compbiomed.2022.106493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 12/11/2022] [Accepted: 12/27/2022] [Indexed: 12/31/2022]
Abstract
The coronary arteries supply blood to the myocardium, which originate from the root of the aorta and mainly branch into the left and right. X-ray digital subtraction angiography (DSA) is a technique for evaluating coronary artery plaques and narrowing, that is widely used because of its time efficiency and cost-effectiveness. However, automated coronary vessel classification and segmentation remains challenging using a little data. Therefore, the purpose of this study is twofold: one is to propose a more robust method for vessel segmentation, the other is to provide a solution that is feasible with a small amount of labeled data. Currently, there are three main types of vessel segmentation methods, i.e., graphical- and statistical-based; clustering theory based, and deep learning-based methods for pixel-by-pixel probabilistic prediction, among which the last method is the mainstream with high accuracy and automation. Under this trend, an Inception-SwinUnet (ISUnet) network combining the convolutional neural network and Transformer basic module was proposed in this paper. Considering that data-driven fully supervised learning (FSL) segmentation methods require a large set of paired data with high-quality pixel-level annotation, which is expertise-demanding and time-consuming, we proposed a Semi-supervised Learning (SSL) method to achieve better performance with a small amount of labeled and unlabeled data. Different from the classical SSL method, i.e., Mean-Teacher, our method used two different networks for cross-teaching as the backbone. Meanwhile, inspired by deep supervision and confidence learning (CL), two effective strategies for SSL were adopted, which were denominated Pyramid-consistency Learning (PL) and Confidence Learning (CL), respectively. Both were designed to filter the noise and improve the credibility of pseudo labels generated by unlabeled data. Compared with existing methods, ours achieved superior segmentation performance over other FSL and SSL ones by using data with a small equal number of labels. Code is available in https://github.com/Allenem/SSL4DSA.
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18
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Carpenter HJ, Ghayesh MH, Zander AC, Psaltis PJ. On the nonlinear relationship between wall shear stress topology and multi-directionality in coronary atherosclerosis. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 231:107418. [PMID: 36842347 DOI: 10.1016/j.cmpb.2023.107418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 02/01/2023] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
BACKGROUND AND OBJECTIVE In this paper we investigate twelve multi-directional/topological wall shear stress (WSS) derived metrics and their relationships with the formation of coronary plaques in both computational fluid dynamics (CFD) and dynamic fluid-structure interaction (FSI) frameworks. While low WSS is one of the most established biomechanical markers associated with coronary atherosclerosis progression, alone it is limited. Multi-directional and topological WSS derived metrics have been shown to be important in atherosclerosis related mechanotransduction and near-wall transport processes. However, the relationships between these twelve WSS metrics and the influence of both FSI simulations and coronary dynamics is understudied. METHODS We first investigate the relationships between these twelve WSS derived metrics, stenosis percentage and lesion length through a parametric, transient CFD study. Secondly, we extend the parametric study to FSI, both with and without the addition of coronary dynamics, and assess their correlations. Finally, we present the case of a patient who underwent invasive coronary angiography and optical coherence tomography imaging at two time points 18 months apart. Associations between each of the twelve WSS derived metrics in CFD, static FSI and dynamic FSI simulations were assessed against areas of positive/negative vessel remodelling, and changes in plaque morphology. RESULTS 22-32% stenosis was the threshold beyond which adverse multi-directional/topological WSS results. Each metric produced a different relationship with changing stenoses and lesion length. Transient haemodynamics was impacted by coronary dynamics, with the topological shear variation index suppressed by up to 94%. These changes appear more critical at smaller stenosis levels, suggesting coronary dynamics could play a role in the earlier stages of atherosclerosis development. In the patient case, both dynamics and FSI vs CFD changes altered associations with measured changes in plaque morphology. An appendix of the linear fits between the various FSI- and CFD-based simulations is provided to assist in scaling CFD-based results to resemble the compliant walled characteristics of FSI more accurately. CONCLUSIONS These results highlight the potential for coronary dynamics to alter multi-directional/topological WSS metrics which could impact associations with changes in coronary atherosclerosis over time. These results warrant further investigation in a wider range of morphological settings and longitudinal cohort studies in the future.
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Affiliation(s)
- Harry J Carpenter
- School of Mechanical Engineering, University of Adelaide, Adelaide, South Australia 5005, Australia.
| | - Mergen H Ghayesh
- School of Mechanical Engineering, University of Adelaide, Adelaide, South Australia 5005, Australia.
| | - Anthony C Zander
- School of Mechanical Engineering, University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Peter J Psaltis
- Vascular Research Centre, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), Adelaide, South Australia 5000, Australia; Adelaide Medical School, University of Adelaide, Adelaide, South Australia 5005, Australia; Department of Cardiology, Central Adelaide Local Health Network, Adelaide, South Australia 5000, Australia
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