Molecular physiology of copper in Drosophila melanogaster

Effects of Elevated CO2 and O3 on Aboveground Brassicaceous Plant-Insect Interactions

Atmospheric gases, such as carbon dioxide (CO2) and ozone (O3), influence plant-insect interactions, with variable effects. The few studies that have investigated the direct effects of elevated CO2 (eCO2; 750-900 ppm) or elevated O3 (eO3; 60-200 ppb) on insects have shown mixed results. Instead, most research has focused on the indirect effects through changes in the host plant. In general, the lower nitrogen levels in C3 brassicaceous plants grown at eCO2 negatively affect insects and may result in compensatory feeding. Phytohormones involved in plant resistance may be altered by eCO2 or eO3. For example, stress-related jasmonate levels, which lead to induced resistance against chewing herbivores, are weakened at eCO2. In general, eCO2 does not affect herbivore-induced plant volatiles, which remain attractive to natural enemies. However, floral volatiles and herbivore-induced plant volatiles may be degraded by O3, affecting pollination and foraging natural enemy behavior. Thus, eCO2 and eO3 alter plant-insect interactions; however, many aspects remain poorly understood.

A circular RNA-gawky-chromatin regulatory axis modulates stress-induced transcription

In response to heavy metal stress, the RNA-binding protein (RBP) gawky translocates into the nucleus and acts as a chromatin-interacting factor to activate the transcription of many stress-responsive genes. However, the upstream regulators of gawky-mediated transcription and their mechanistic details remain unknown. Here, we identified a class of metal-responsive element-containing circRNAs (MRE circRNAs) which specifically interact with gawky during copper stress. Using classic stress-responsive genes as a readout (Drosophila MT), we found that overexpression of MRE circRNAs led to a significant repression in stress-induced transcription. Mechanistically, MRE circRNAs promote the dissociation of gawky from chromatin and increase its aberrant cytoplasmic accumulation, which ultimately impedes the loading of RNA polymerase II to the active gene loci. The MRE motif serves as an important RNA regulon for maintaining the circRNA-gawky interaction, loss of which impaired the inhibitory effects of MRE circRNAs on gawky. Through RNA-seq analyses, we then identified over 500 additional stress-responsive genes whose induced transcription was attenuated upon MRE circRNA overexpression. Finally, we uncovered the physiological relevance of MRE circRNA-mediated regulation in cellular defense against copper overloading. Taken together, this study proposes that the circRNA-RBP-chromatin axis may represent a fundamental regulatory network for gene expression in eukaryotic cells.

The DEAD-box helicase Hlc regulates basal transcription and chromatin opening of stress-responsive genes

Stress-responsive genes are lowly transcribed under normal conditions and robustly induced in response to stress. The significant difference between basal and induced transcription indicates that the general transcriptional machinery requires a mechanism to distinguish each transcription state. However, what factors specifically function in basal transcription remains poorly understood. Using a classic model stress-responsive gene (Drosophila MtnA), we found that knockdown of the DEAD-box helicase Hlc resulted in a significant transcription attenuation of MtnA under normal, but not stressed, conditions. Mechanistically, Hlc directly binds to the MtnA locus to maintain the accessibility of chromatin near the transcriptional start site, which allows the recruitment of RNA polymerase II and subsequent MtnA transcription. Using RNA-seq, we then identified plenty of additional stress-responsive genes whose basal transcription was reduced upon knockdown of Hlc. Taken together, these data suggest that Hlc-mediated basal transcription regulation is an essential and widespread mechanism for precise control of stress-responsive genes.