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Antonio Hernández Martínez S, Tang P, Parra-Saldívar R, Melchor-Martínez EM, Czekster CM. Immobilized Nucleoside 2'-Deoxyribosyltransferases from Extremophiles for Nucleoside Biocatalysis. ACS OMEGA 2025; 10:1067-1076. [PMID: 39829460 PMCID: PMC11740241 DOI: 10.1021/acsomega.4c08364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 12/07/2024] [Accepted: 12/12/2024] [Indexed: 01/22/2025]
Abstract
The synthesis of nucleosides is crucial for pharmaceutical and biotechnological applications, acting as drugs and as essential building blocks for numerous therapeutic agents. However, most enzymes employed in nucleoside biocatalysis are not recycled, possess limited stability, and have strict substrate selection for ribonucleosides or 2'deoxyribonucleosides. We employed 2'-deoxyribonucleoside transferase (NDT) enzymes from thermophilic and psychrophilic bacteria to demonstrate they can be immobilized to enhance specific activity, stability, and recyclability. NDT enzymes from Chroococcidiopsis thermalis (CtNDT), and Bacillus psychrosaccharolyticus (BpNDT) were immobilized by covalent attachment to chitosan beads. A double mutant of CtNDT, capable of generating 3'deoxyribonucleosides, showed remarkable and increased stability after immobilization compared to the same enzyme in the solution. Furthermore, we demonstrated the recyclability of immobilized biocatalysts, with a 10-fold improvement in reaction yield over 20 consecutive cycles, highlighting the practicality and sustainability of the developed immobilization method. We used our strategy to produce a pharmaceutically relevant 3'deoxyribonucleoside (2-fluoro-3'-deoxyadenosine). This highlights the importance of efficient immobilization techniques to enhance the catalytic properties of NDT enzymes, expanding their utility in biocatalysis.
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Affiliation(s)
| | - Peijun Tang
- School
of
Biology, University of St Andrews, North Haugh, St Andrews KY16 9ST, U.K.
| | - Roberto Parra-Saldívar
- Facultad
de Medicina, Universidad Autónoma
de Nuevo León, Monterrey, Nuevo León 64460, México
- Megan Centre
of Applied Mycology (MCAM), Faculty of Engineering and Applied Sciences, Cranfield University,
Cranfield, Bedford MK43 0AL, U.K.
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Sharma V, Kapil D, Singh B. Recent advances in biomarkers detection of various diseases by biosensors derived from optical chromogenic polymeric transducers: A review. Process Biochem 2025; 148:191-221. [DOI: 10.1016/j.procbio.2024.11.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
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3
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Novalia Rahmawati Sianipar R, Suryanegara L, Fatriasari W, Tangke Arung E, Wijaya Kusuma I, Setiati Achmadi S, Izyan Wan Azelee N, Ain Abdul Hamid Z. The Role of Selected Flavonoids from Bajakah Tampala (Spatholobus littoralis Hassk.) Stem on Cosmetic Properties: A Review. Saudi Pharm J 2023; 31:382-400. [PMID: 37026052 PMCID: PMC10071331 DOI: 10.1016/j.jsps.2023.01.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Accepted: 01/22/2023] [Indexed: 01/27/2023] Open
Abstract
Cosmetics made from natural ingredients are increasingly popular because they contain bioactive compounds which can provide many health benefits, more environmentally friendly and sustainable. The health benefits obtained from natural-based ingredients include anti-aging, photoprotective, antioxidant, and anti-inflammatory. This article reviewed the potential of selected flavonoids from bajakah tampala (Spatholobus littoralis Hassk.) as the native plant in Indonesia. We present in silico, in vitro, in vivo, and clinical research data on the use of selected flavonoids that have been reported in other extracts.
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4
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Determination of β-glucosidase activity using single-particle enumeration with Au@CeO2 nanoparticles. Mikrochim Acta 2022; 189:480. [DOI: 10.1007/s00604-022-05580-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 11/15/2022] [Indexed: 11/30/2022]
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Magalhães FF, Pereira AF, Freire MG, Tavares APM. New liquid supports in the development of integrated platforms for the reuse of oxidative enzymes and polydopamine production. Front Bioeng Biotechnol 2022; 10:1037322. [DOI: 10.3389/fbioe.2022.1037322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Accepted: 11/15/2022] [Indexed: 11/29/2022] Open
Abstract
Polydopamine (PDA), a bioinspired polymer from mussel adhesive proteins, has attracted impressive attention as a novel coating for (nano) materials with an adequate conformal layer and adjustable thickness. Currently, PDA is obtained from dopamine chemical oxidation under alkaline conditions, limiting its use in materials sensible to alkaline environments. Envisaging a widespread use of PDA, the polymerization of dopamine by enzymatic catalysis allows the dopamine polymerization in a large range of pHs, overcoming thus the limitations of conventional chemical oxidation. Moreover, the conventional method of polymerization is a time-consuming process and produces PDA films with poor stability, which restricts its applications. On the other hand, the main bottleneck of enzyme-based biocatalytic processes is the high cost of the single use of the enzyme. In this work, laccase was used to catalyse dopamine polymerization. To improve its performance, a liquid support for integrating the laccase and its reuse together with the PDA production and recovery was developed using aqueous biphasic systems (ABS). Firstly, dopamine polymerization by laccase was optimized in terms of pH, temperature and initial dopamine concentration. It was demonstrated that the highest enzymatic polymerization of dopamine was achieved at pH 5.5, 30°C and 2 mg ml−1 of dopamine. Then, ABS composed of polymers, salts and ionic liquids were evaluated to optimize the laccase confinement in one phase while PDA is recovered in the opposite phase. The most promising ABS allowing the separation of laccase from the reaction product is composed of polypropylene glycol (400 g mol−1) and K2HPO4. The polymerization of dopamine in ABS leads to a remarkable improvement of polymerization of 3.9-fold in comparison to the conventional chemical PDA polymerization. The phase containing the confined laccase was reused for four consecutive reaction cycles, with a relative polymerization of 68.9% in the last cycle. The results of this work proved that ABS are a promising approach to create a liquid support for enzyme reuse allowing the process intensification efforts. The use of biocatalysts in ABS emerges as sustainable and alternative platforms from environmental and techno-economic points of view.
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Mine M, Mizuguchi H, Takayanagi T. Kinetic analyses of two-steps oxidation from l-tyrosine to l-dopaquinone with tyrosinase by capillary electrophoresis/dynamic frontal analysis. Anal Biochem 2022; 655:114856. [PMID: 35964734 DOI: 10.1016/j.ab.2022.114856] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 08/05/2022] [Accepted: 08/08/2022] [Indexed: 11/01/2022]
Abstract
Tyrosinase catalyzes the oxidation of l-tyrosine in two stages to produce l-dopa and l-dopaquinone stepwise, and l-dopaquinone is subsequently converted to dopachrome. Most of the conventional analyses subjected only one-step reaction from l-tyrosine to l-dopa or from l-dopa to l-dopaquinone. In this study, kinetic analyses of two-steps oxidation of l-tyrosine with tyrosinase were made by capillary electrophoresis/dynamic frontal analysis (CE/DFA). When l-dopa was introduced into a capillary as a sample plug in a CE/DFA format, the enzymatic oxidation continuously occurred during the electrophoresis, and the product l-dopaquinone was subsequently converted to dopachrome which was detected as a plateau signal. A Michaelis-Menten constant of the second-step kinetic reaction, Km,Do, was determined as 0.45 ± 0.03 mmol L-1. In the analysis of the first-step kinetic reaction from l-tyrosine to l-dopa, l-dopa was not resolved by CE/DFA because both l-tyrosine and l-dopa are electrically neutral. The l-dopa formed and co-migrated at the l-tyrosine zone was calibrated beforehand with the final product of dopachrome detected as a plateau signal. Constantly formed l-dopa was successfully detected as a plateau signal of dopachrome, and a Michaelis-Menten constant of Km,Ty was also determined as 0.061 ± 0.009 mmol L-1 by the CE/DFA. CE/DFA is applicable to two-steps enzymatic reactions.
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Affiliation(s)
- Masanori Mine
- Graduate School of Advanced Technology and Science, Tokushima University, 2-1 Minamijyousanjima-cho, Tokushima, 770-8506, Japan
| | - Hitoshi Mizuguchi
- Graduate School of Technology, Industrial and Social Sciences, Tokushima University, 2-1 Minamijyousanjima-cho, Tokushima, 770-8506, Japan
| | - Toshio Takayanagi
- Graduate School of Technology, Industrial and Social Sciences, Tokushima University, 2-1 Minamijyousanjima-cho, Tokushima, 770-8506, Japan.
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Zhang Y, Du B, Wu Y, Liu Z, Wang J, Xu J, Tong Z, Mu X, Liu B. Fe 3O 4@PDA@PEI Core-Shell Microspheres as a Novel Magnetic Sorbent for the Rapid and Broad-Spectrum Separation of Bacteria in Liquid Phase. MATERIALS 2022; 15:ma15062039. [PMID: 35329490 PMCID: PMC8949534 DOI: 10.3390/ma15062039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 02/28/2022] [Accepted: 03/04/2022] [Indexed: 12/03/2022]
Abstract
Bacterial infection is a significant cause of morbidity and mortality to humans worldwide. Thus, a method for nonspecific, sensitive, and rapid enrichment of such bacteria is essential for bacteria detection and treatment. This study demonstrates a self-made core-shell Fe3O4@Polydopamine@Polyethyleneimine magnetic beads (Fe3O4@PDA@PEI MBs) with a high density positive charge-based magnetic separation scheme for the broad-spectrum rapid enrichment of microorganisms in the liquid phase. MBs with a high-density positive charge have a strong electrostatic attraction to most microorganisms in nature. Our scheme is as follows: (1) wrapping dopamine (DA) on the iron oxide through self-polymerization and wrapping PEI on the outermost shell layer in a mode of crosslinking with the PDA; (2) subsequently, the Fe3O4@PDA@PEI MBs were used to concentrate microorganisms from the sample solution; (3) performing magnetic separation and calculating the adsorption efficiency. The as-prepared Fe3O4@PDA@PEI MBs composite was carefully characterized by zeta potential analysis, Value stream-mapping (VSM), transmission electron microscopy (TEM), and Fourier transforms infrared spectrometry (FT-IR). In this study, both gram-positive and gram-negative bacteria could be captured in three minutes through electrostatic interaction. Furthermore, the adsorption efficiency on gram-negative (>98%) is higher than that on gram-positive (>95%), allowing for a simple, rapid assay to enrich organisms in resource-limited settings.
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Chen GY, Zhang H, Zhang CY, Wang Y, Zhao CP, Chen H, Yang FQ, Hu YJ. Immobilized Kallikrein Microreactor Based on Capillary Electrophoresis for Online Enzyme Kinetics Analysis and Inhibitor Screening. Chromatographia 2021; 84:1141-1150. [DOI: 10.1007/s10337-021-04098-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 08/20/2021] [Accepted: 09/03/2021] [Indexed: 10/20/2022]
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Rozenski J, Asfaw AA, Van Schepdael A. Overview of in-capillary enzymatic reactions using capillary electrophoresis. Electrophoresis 2021; 43:57-73. [PMID: 34510496 DOI: 10.1002/elps.202100161] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 08/23/2021] [Accepted: 09/07/2021] [Indexed: 12/20/2022]
Abstract
This review summarizes the research that has recently been performed on in-capillary enzymatic reactions integrated with capillary electrophoresis. The manuscript is subdivided in homogeneous and heterogeneous approaches. The main homogeneous techniques are Electrophoretically Mediated Microanalysis, At-inlet and Transverse Diffusion of Laminar Flow Profiles. The main heterogeneous ones are Immobilized MicroEnzyme Reactors with enzymes grafted on either non-magnetic or magnetic particles. The overview covers the period from 2018 to early 2021. The applications range from drug discovery over natural products to food, beverage and pesticide analysis.
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Affiliation(s)
- Jef Rozenski
- Department ofPharmaceutical and Pharmacological Sciences, Medicinal Chemistry, Rega Institute, KU Leuven-University of Leuven, Leuven, Belgium
| | - Adissu Alemayehu Asfaw
- Department of Pharmaceutical and Pharmacological Sciences, Pharmaceutical Analysis, KU Leuven- University of Leuven, Leuven, Belgium.,Department of Pharmaceutical Analysis and Quality Assurance, College of Health Sciences, School of Pharmacy, Mekelle University, Mekelle, Ethiopia
| | - Ann Van Schepdael
- Department of Pharmaceutical and Pharmacological Sciences, Pharmaceutical Analysis, KU Leuven- University of Leuven, Leuven, Belgium
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Zhang H, Li X, Qian ZM, Wang S, Yang FQ. Glucose oxidase-mediated sodium alginate gelation: Equipment-Free detection of glucose in fruit samples. Enzyme Microb Technol 2021; 148:109805. [PMID: 34116756 DOI: 10.1016/j.enzmictec.2021.109805] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 04/13/2021] [Accepted: 04/16/2021] [Indexed: 10/21/2022]
Abstract
In this study, a paper-based sensor, combined with a visual distance-readout method, was developed to determine glucose in fruit samples based on the glucose oxidase-mediated sodium alginate gelation. The type of filter paper, the concentration of sodium alginate and the enzymatic reaction conditions were systematically investigated. Under optimal conditions, the increase in diffusion diameter showed a good linear relationship with glucose concentration between 1.4-7.0 mM, and the limit of quantification was 1.4 mM. Finally, the applicability of the proposed strategy was successfully verified by measuring glucose concentrations in fruit samples. The results generated by the developed paper-based sensor were in good agreement with the results obtained from a glucose assay kit. The recoveries were 91.8%-99.1%. In short, the present study developed a simple, low-cost and efficient method for assessing fruit quality and for guiding fruit intake for diabetic patients, especially in remote or resource-limited regions.
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Affiliation(s)
- Hao Zhang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing, 401331, China
| | - Xiuzhu Li
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao, China
| | | | - Shengpeng Wang
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao, China
| | - Feng-Qing Yang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing, 401331, China.
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Zhao CP, Chen GY, Wang Y, Chen H, Yu JW, Yang FQ. Evaluation of Enzyme Inhibitory Activity of Flavonoids by Polydopamine-Modified Hollow Fiber-Immobilized Xanthine Oxidase. Molecules 2021; 26:molecules26133931. [PMID: 34203179 PMCID: PMC8271864 DOI: 10.3390/molecules26133931] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 06/24/2021] [Accepted: 06/24/2021] [Indexed: 01/20/2023] Open
Abstract
In this study, a polydopamine (PDA)-modified hollow fiber-immobilized xanthine oxidase (XOD) was prepared for screening potential XOD inhibitors from flavonoids. Several parameters for the preparation of PDA-modified hollow fiber-immobilized XOD, including the dopamine concentration, modification time, XOD concentration and immobilization time, were optimized. The results show that the optimal conditions for immobilized XOD activity were a dopamine concentration of 2.0 mg/mL in 10.0 mM Tris-HCl buffer (pH 8.5), a modification time of 3.0 h, an XOD concentration of 1000 μg/mL in 10.0 mM phosphate buffer (pH 7.5) and an immobilization time of 3.0 h. Subsequently, the enzymatic reaction conditions such as the pH value and temperature were investigated, and the enzyme kinetics and inhibition parameters were determined. The results indicate that the optimal pH value (7.5) and temperature (37 °C) of the PDA-modified hollow fiber-immobilized XOD were consistent with the free enzyme. Moreover, the PDA-modified hollow fiber-immobilized XOD could still maintain above 50% of its initial immobilized enzyme activity after seven consecutive cycles. The Michaelis–Menten constant (Km) and the half-maximal inhibitory concentration (IC50) of allopurinol on the immobilized XOD were determined as 0.25 mM and 23.2 μM, respectively. Furthermore, the PDA-modified hollow fiber-immobilized XOD was successfully applied to evaluate the inhibitory activity of eight flavonoids. Quercetin, apigenin, puerarin and epigallocatechin showed a good inhibition effect, and their percentages of inhibition were (79.86 ± 3.50)%, (80.98 ± 0.64)%, (61.15 ± 6.26)% and (54.92 ± 0.41)%, respectively. Finally, molecular docking analysis further verified that these four active compounds could bind to the amino acid residues in the XOD active site. In summary, the PDA-modified hollow fiber-immobilized XOD is an efficient method for the primary screening of XOD inhibitors from natural products.
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Affiliation(s)
- Cong-Peng Zhao
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China; (C.-P.Z.); (G.-Y.C.); (Y.W.); (H.C.)
| | - Guo-Ying Chen
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China; (C.-P.Z.); (G.-Y.C.); (Y.W.); (H.C.)
| | - Yuan Wang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China; (C.-P.Z.); (G.-Y.C.); (Y.W.); (H.C.)
| | - Hua Chen
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China; (C.-P.Z.); (G.-Y.C.); (Y.W.); (H.C.)
| | - Jia-Wen Yu
- Taiji Group Chongqing Fuling Pharmaceutical Co., Ltd., Chongqing 408000, China
- Correspondence: (J.-W.Y.); (F.-Q.Y.); Tel.: +86-139-8330-0448 (J.-W.Y.); +86-136-1765-0637 (F.-Q.Y.)
| | - Feng-Qing Yang
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 401331, China; (C.-P.Z.); (G.-Y.C.); (Y.W.); (H.C.)
- Correspondence: (J.-W.Y.); (F.-Q.Y.); Tel.: +86-139-8330-0448 (J.-W.Y.); +86-136-1765-0637 (F.-Q.Y.)
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Rentería‐Ortega M, Salgado‐Cruz MDLP, Morales‐Sánchez E, Alamilla‐Beltrán L, Valdespino‐León M, Calderón‐Domínguez G. Glucose oxidase release of stressed chia mucilage‐sodium alginate capsules prepared by electrospraying. J FOOD PROCESS PRES 2021. [DOI: 10.1111/jfpp.15484] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Minerva Rentería‐Ortega
- Departamento de Ingeniería Bioquímica Escuela Nacional de Ciencias BiológicasInstituto Politécnico Nacional Ciudad de México México
| | - Ma de la Paz Salgado‐Cruz
- Departamento de Ingeniería Bioquímica Escuela Nacional de Ciencias BiológicasInstituto Politécnico Nacional Ciudad de México México
- Consejo Nacional de Ciencia y Tecnología (CONACYT) Ciudad de México México
| | | | - Liliana Alamilla‐Beltrán
- Departamento de Ingeniería Bioquímica Escuela Nacional de Ciencias BiológicasInstituto Politécnico Nacional Ciudad de México México
| | - Mariana Valdespino‐León
- Departamento de Ingeniería Bioquímica Escuela Nacional de Ciencias BiológicasInstituto Politécnico Nacional Ciudad de México México
| | - Georgina Calderón‐Domínguez
- Departamento de Ingeniería Bioquímica Escuela Nacional de Ciencias BiológicasInstituto Politécnico Nacional Ciudad de México México
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Chen GY, Zhang H, Yang FQ. A simple and portable method for β-Glucosidase activity assay and its inhibitor screening based on a personal glucose meter. Anal Chim Acta 2021; 1142:19-27. [PMID: 33280697 DOI: 10.1016/j.aca.2020.10.047] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 10/21/2020] [Accepted: 10/23/2020] [Indexed: 11/21/2022]
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