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Jiang K, Liu Z, Small M, Zou Y. Chaotic time series classification by means of reservoir-based convolutional neural networks. CHAOS (WOODBURY, N.Y.) 2025; 35:043127. [PMID: 40207723 DOI: 10.1063/5.0255707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2024] [Accepted: 03/29/2025] [Indexed: 04/11/2025]
Abstract
We propose a novel Reservoir Computing (RC) based classification method that distinguishes between different chaotic time series. Our method is composed of two steps: (i) we use the reservoir as a feature extracting machine that captures the salient features of time series data; (ii) the readout layer of the reservoir is subsequently fed into a Convolutional Neural Network (CNN) to facilitate classification and recognition. One of the notable advantages is that the readout layer, as obtained by randomly generated empirical hyper-parameters within the RC module, provides sufficient information for the CNN to accomplish the classification tasks effectively. The quality of extracted features by RC is independently evaluated by the root mean square error, which measures how well the training signal may be reconstructed from the input time series. Furthermore, we propose two ways to implement the RC module, namely, a single shallow RC and parallel RC configurations, to further improve the classification accuracy. The important roles of RC in feature extraction are demonstrated by comparing the results when the CNN is provided with either ordinal pattern probability features or unprocessed raw time series directly, both of which perform worse than RC-based method. In addition to CNN, we show that the readout of RC is good for other classification tools as well. The successful classification of electroencephalogram recordings of different brain states suggests that our RC-based classification tools can be used for experimental studies.
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Affiliation(s)
- Kaiwen Jiang
- School of Physics and Electronic Science, East China Normal University, Shanghai 200062, China
| | - Zonghua Liu
- School of Physics and Electronic Science, East China Normal University, Shanghai 200062, China
| | - Michael Small
- Complex Systems Group, Department of Mathematics and Statistics, University of Western Australia, Crawley, Western Australia 6009, Australia
- Mineral Resources, CSIRO, Kensington, Western Australia 6151, Australia
| | - Yong Zou
- School of Physics and Electronic Science, East China Normal University, Shanghai 200062, China
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Radwan YA, Ahmed Mohamed E, Metwalli D, Barakat M, Ahmed A, Kiroles AE, Selim S. Stochasticity as a solution for overfitting-A new model and comparative study on non-invasive EEG prospects. Front Hum Neurosci 2025; 19:1484470. [PMID: 39925722 PMCID: PMC11802819 DOI: 10.3389/fnhum.2025.1484470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Accepted: 01/06/2025] [Indexed: 02/11/2025] Open
Abstract
The potential and utility of inner speech is pivotal for developing practical, everyday Brain-Computer Interface (BCI) applications, as it represents a type of brain signal that operates independently of external stimuli however it is largely underdeveloped due to the challenges faced in deciphering its signals. In this study, we evaluated the behaviors of various Machine Learning (ML) and Deep Learning (DL) models on a publicly available dataset, employing popular preprocessing methods as feature extractors to enhance model training. We face significant challenges like subject-dependent variability, high noise levels, and overfitting. To address overfitting in particular, we propose using "BruteExtraTree": a new classifier which relies on moderate stochasticity inherited from its base model, the ExtraTreeClassifier. This model not only matches the best DL model, ShallowFBCSPNet, in the subject-independent scenario in our experiments scoring 32% accuracy, but also surpasses the state-of-the-art by achieving 46.6% average per-subject accuracy in the subject-dependent case. Our results on the subject-dependent case show promise on the possibility of a new paradigm for using inner speech data inspired from LLM pretraining but we also highlight the crucial need for a drastic change in data recording or noise removal methods to open the way for more practical accuracies in the subject-independent case.
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Affiliation(s)
- Yousef A. Radwan
- Center for Informatics Science (CIS), School of Information Technology and Computer Science, Nile University, Sheikh Zayed City, Giza, Egypt
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Gao Y, Liu A, Cui H, Qian R, Chen X. An interpretable and generalizable deep learning model for iEEG-based seizure prediction using prototype learning and contrastive learning. Comput Biol Med 2024; 183:109257. [PMID: 39423703 DOI: 10.1016/j.compbiomed.2024.109257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 09/09/2024] [Accepted: 10/06/2024] [Indexed: 10/21/2024]
Abstract
Epileptic seizure prediction plays a crucial role in enhancing the quality of life for individuals with epilepsy. Over recent years, a multitude of deep learning-based approaches have emerged to tackle this challenging task, leading to significant advancements. However, the 'black-box' nature of deep learning models and the considerable interpatient variability significantly impede their interpretability and generalization, thereby severely hampering their efficacy in real-world clinical applications. To address these issues, our study aims to establish an interpretable and generalizable seizure prediction model that meets the demands of clinical diagnosis. Our method extends self-interpretable prototype learning networks into a novel domain adaptation framework designed specifically for cross-patient seizure prediction. The proposed framework enables patient-level interpretability by tracing the origins of significant prototypes. For instance, it could provide information about the seizure type of the patient to which the prototype belongs. This surpasses the existing sample-level interpretability, which is limited to individual patient samples. To further improve the model's generalization capability, we introduce a contrastive semantic alignment loss constraint to the embedding space, enhancing the robustness of the learned prototypes. We evaluate our proposed model using the Freiburg intracranial electroencephalography (iEEG) dataset, which consists of 20 patients and a total of 82 seizures. The experimental results demonstrated a high sensitivity of 79.0%, a low false prediction rate of 0.183, and a high area under the receiver operating characteristic curve (AUC) value of 0.804, achieving state-of-the-art performance with self-interpretable evidence in contrast to the current cross-patient seizure prediction methods. Our study represents a significant step forward in developing an interpretable and generalizable model for seizure prediction, thereby facilitating the application of deep learning models in clinical diagnosis.
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Affiliation(s)
- Yikai Gao
- Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230001, China; Department of Electronic Engineering and Information Science, University of Science and Technology of China, Hefei 230001, China
| | - Aiping Liu
- Department of Electronic Engineering and Information Science, University of Science and Technology of China, Hefei 230001, China
| | - Heng Cui
- Department of Electronic Engineering and Information Science, University of Science and Technology of China, Hefei 230001, China
| | - Ruobing Qian
- Department of Electronic Engineering and Information Science, University of Science and Technology of China, Hefei 230001, China.
| | - Xun Chen
- Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230001, China; Department of Electronic Engineering and Information Science, University of Science and Technology of China, Hefei 230001, China.
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Paliwal V, Das K, Doesburg SM, Medvedev G, Xi P, Ribary U, Pachori RB, Vakorin VA. Classifying Routine Clinical Electroencephalograms With Multivariate Iterative Filtering and Convolutional Neural Networks. IEEE Trans Neural Syst Rehabil Eng 2024; 32:2038-2048. [PMID: 38768007 DOI: 10.1109/tnsre.2024.3403198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]
Abstract
Electroencephalogram (EEG) is widely used in basic and clinical neuroscience to explore neural states in various populations, and classifying these EEG recordings is a fundamental challenge. While machine learning shows promising results in classifying long multivariate time series, optimal prediction models and feature extraction methods for EEG classification remain elusive. Our study addressed the problem of EEG classification under the framework of brain age prediction, applying a deep learning model on EEG time series. We hypothesized that decomposing EEG signals into oscillatory modes would yield more accurate age predictions than using raw or canonically frequency-filtered EEG. Specifically, we employed multivariate intrinsic mode functions (MIMFs), an empirical mode decomposition (EMD) variant based on multivariate iterative filtering (MIF), with a convolutional neural network (CNN) model. Testing a large dataset of routine clinical EEG scans (n = 6540) from patients aged 1 to 103 years, we found that an ad-hoc CNN model without fine-tuning could reasonably predict brain age from EEGs. Crucially, MIMF decomposition significantly improved performance compared to canonical brain rhythms (from delta to lower gamma oscillations). Our approach achieved a mean absolute error (MAE) of 13.76 ± 0.33 and a correlation coefficient of 0.64 ± 0.01 in brain age prediction over the entire lifespan. Our findings indicate that CNN models applied to EEGs, preserving their original temporal structure, remains a promising framework for EEG classification, wherein the adaptive signal decompositions such as the MIF can enhance CNN models' performance in this task.
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Mallick S, Baths V. Novel deep learning framework for detection of epileptic seizures using EEG signals. Front Comput Neurosci 2024; 18:1340251. [PMID: 38590939 PMCID: PMC11000706 DOI: 10.3389/fncom.2024.1340251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 03/04/2024] [Indexed: 04/10/2024] Open
Abstract
Introduction Epilepsy is a chronic neurological disorder characterized by abnormal electrical activity in the brain, often leading to recurrent seizures. With 50 million people worldwide affected by epilepsy, there is a pressing need for efficient and accurate methods to detect and diagnose seizures. Electroencephalogram (EEG) signals have emerged as a valuable tool in detecting epilepsy and other neurological disorders. Traditionally, the process of analyzing EEG signals for seizure detection has relied on manual inspection by experts, which is time-consuming, labor-intensive, and susceptible to human error. To address these limitations, researchers have turned to machine learning and deep learning techniques to automate the seizure detection process. Methods In this work, we propose a novel method for epileptic seizure detection, leveraging the power of 1-D Convolutional layers in combination with Bidirectional Long Short-Term Memory (LSTM) and Gated Recurrent Unit (GRU) and Average pooling Layer as a single unit. This unit is repeatedly used in the proposed model to extract the features. The features are then passed to the Dense layers to predict the class of the EEG waveform. The performance of the proposed model is verified on the Bonn dataset. To assess the robustness and generalizability of our proposed architecture, we employ five-fold cross-validation. By dividing the dataset into five subsets and iteratively training and testing the model on different combinations of these subsets, we obtain robust performance measures, including accuracy, sensitivity, and specificity. Results Our proposed model achieves an accuracy of 99-100% for binary classifications into seizure and normal waveforms, 97.2%-99.2% accuracy for classifications into normal-interictal-seizure waveforms, 96.2%-98.4% accuracy for four class classification and accuracy of 95.81%-98% for five class classification. Discussion Our proposed models have achieved significant improvements in the performance metrics for the binary classifications and multiclass classifications. We demonstrate the effectiveness of the proposed architecture in accurately detecting epileptic seizures from EEG signals by using EEG signals of varying lengths. The results indicate its potential as a reliable and efficient tool for automated seizure detection, paving the way for improved diagnosis and management of epilepsy.
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Affiliation(s)
- Sayani Mallick
- Cognitive Neuroscience Laboratory, Department of Electrical and Electronics Engineering, BITS Pilani, KK Birla Goa Campus, Pilani, Goa, India
| | - Veeky Baths
- Cognitive Neuroscience Laboratory, Department of Biological Sciences, BITS Pilani, KK Birla Goa Campus, Pilani, Goa, India
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Yousif MAA, Ozturk M. Deep Learning-Based Classification of Epileptic Electroencephalography Signals Using a Concentrated Time-Frequency Approach. Int J Neural Syst 2023; 33:2350064. [PMID: 37830300 DOI: 10.1142/s0129065723500648] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2023]
Abstract
ConceFT (concentration of frequency and time) is a new time-frequency (TF) analysis method which combines multitaper technique and synchrosqueezing transform (SST). This combination produces highly concentrated TF representations with approximately perfect time and frequency resolutions. In this paper, it is aimed to show the TF representation performance and robustness of ConceFT by using it for the classification of the epileptic electroencephalography (EEG) signals. Therefore, a signal classification algorithm which uses TF images obtained with ConceFT to feed the transfer learning structure has been presented. Epilepsy is a common neurological disorder that millions of people suffer worldwide. Daily lives of the patients are quite difficult because of the unpredictable time of seizures. EEG signals monitoring the electrical activity of the brain can be used to detect approaching seizures and make possible to warn the patient before the attack. GoogLeNet which is a well-known deep learning model has been preferred to classify TF images. Classification performance is directly related to the TF representation accuracy of the ConceFT. The proposed method has been tested for various classification scenarios and obtained accuracies between 95.83% and 99.58% for two and three-class classification scenarios. High results show that ConceFT is a successful and promising TF analysis method for non-stationary biomedical signals.
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Affiliation(s)
- Mosab A A Yousif
- Department of Biomedical Engineering, Institute of Graduate Studies, Istanbul University-Cerrahpasa, Istanbul, Turkey
- Department of Electronics Engineering, University of Gezira, Wad-Madani, Sudan
| | - Mahmut Ozturk
- Department of Electrical and Electronics Engineering, Engineering Faculty, Istanbul University-Cerrahpasa, Istanbul, Turkey
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Zeng W, Shan L, Su B, Du S. Epileptic seizure detection with deep EEG features by convolutional neural network and shallow classifiers. Front Neurosci 2023; 17:1145526. [PMID: 37284662 PMCID: PMC10239853 DOI: 10.3389/fnins.2023.1145526] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 05/02/2023] [Indexed: 06/08/2023] Open
Abstract
Introduction In the clinical setting, it becomes increasingly important to detect epileptic seizures automatically since it could significantly reduce the burden for the care of patients suffering from intractable epilepsy. Electroencephalography (EEG) signals record the brain's electrical activity and contain rich information about brain dysfunction. As a non-invasive and inexpensive tool for detecting epileptic seizures, visual evaluation of EEG recordings is labor-intensive and subjective and requires significant improvement. Methods This study aims to develop a new approach to recognize seizures automatically using EEG recordings. During feature extraction of EEG input from raw data, we construct a new deep neural network (DNN) model. Deep feature maps derived from layers placed hierarchically in a convolution neural network are put into different kinds of shallow classifiers to detect the anomaly. Feature maps are reduced in dimensionality using Principal Component Analysis (PCA). Results By analyzing the EEG Epilepsy dataset and the Bonn dataset for epilepsy, we conclude that our proposed method is both effective and robust. These datasets vary significantly in the acquisition of data, the formulation of clinical protocols, and the storage of digital information, making processing and analysis challenging. On both datasets, extensive experiments are performed using a cross-validation by 10 folds strategy to demonstrate approximately 100% accuracy for binary and multi-category classification. Discussion In addition to demonstrating that our methodology outperforms other up-to-date approaches, the results of this study also suggest that it can be applied in clinical practice as well.
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Affiliation(s)
- Wei Zeng
- School of Physics and Mechanical and Electrical Engineering, Longyan University, Longyan, China
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
| | - Liangmin Shan
- School of Physics and Mechanical and Electrical Engineering, Longyan University, Longyan, China
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
| | - Bo Su
- School of Physics and Mechanical and Electrical Engineering, Longyan University, Longyan, China
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
| | - Shaoyi Du
- Institute of Artificial Intelligence and Robotics, Xi'an Jiaotong University, Xi'an, China
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Molnár L, Ferando I, Liu B, Mokhtar P, Domokos J, Mody I. Capturing the power of seizures: an empirical mode decomposition analysis of epileptic activity in the mouse hippocampus. Front Mol Neurosci 2023; 16:1121479. [PMID: 37256078 PMCID: PMC10225690 DOI: 10.3389/fnmol.2023.1121479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2022] [Accepted: 04/28/2023] [Indexed: 06/01/2023] Open
Abstract
Introduction Various methods have been used to determine the frequency components of seizures in scalp electroencephalography (EEG) and in intracortical recordings. Most of these methods rely on subjective or trial-and-error criteria for choosing the appropriate bandwidth for filtering the EEG or local field potential (LFP) signals to establish the frequency components that contribute most to the initiation and maintenance of seizure activity. The empirical mode decomposition (EMD) with the Hilbert-Huang transform is an unbiased method to decompose a time and frequency variant signal into its component non-stationary frequencies. The resulting components, i.e., the intrinsic mode functions (IMFs) objectively reflect the various non-stationary frequencies making up the original signal. Materials and methods We employed the EMD method to analyze the frequency components and relative power of spontaneous electrographic seizures recorded in the dentate gyri of mice during the epileptogenic period. Epilepsy was induced in mice following status epilepticus induced by suprahippocampal injection of kainic acid. The seizures were recorded as local field potentials (LFP) with electrodes implanted in the dentate gyrus. We analyzed recording segments that included a seizure (mean duration 28 s) and an equivalent time period both before and after the seizure. Each segment was divided into non-overlapping 1 s long epochs which were then analyzed to obtain their IMFs (usually 8-10), the center frequencies of the respective IMF and their spectral root-mean-squared (RMS) power. Results Our analysis yielded unbiased identification of the spectral components of seizures, and the relative power of these components during this pathological brain activity. During seizures, the power of the mid frequency components increased while the center frequency of the first IMF (with the highest frequency) dramatically decreased, providing mechanistic insights into how local seizures are generated. Discussion We expect this type of analysis to provide further insights into the mechanisms of seizure generation and potentially better seizure detection.
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Affiliation(s)
- László Molnár
- Department of Electrical Engineering, Sapientia Hungarian University of Transylvania, Târgu-Mures, Romania
| | - Isabella Ferando
- Department of Neurology, The David Geffen School of Medicine at UCLA, Los Angeles, CA, United States
- Department of Neurology, School of Medicine at University of Florida, Miami, FL, United States
| | - Benjamin Liu
- Department of Neurology, The David Geffen School of Medicine at UCLA, Los Angeles, CA, United States
| | - Parsa Mokhtar
- Department of Neurology, The David Geffen School of Medicine at UCLA, Los Angeles, CA, United States
| | - József Domokos
- Department of Electrical Engineering, Sapientia Hungarian University of Transylvania, Târgu-Mures, Romania
| | - Istvan Mody
- Department of Neurology, The David Geffen School of Medicine at UCLA, Los Angeles, CA, United States
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Zhang R, Sui L, Gong J, Cao J. EEG-based real-time diagnostic system with developed dynamic 2TEMD and dynamic ApEn algorithms. Front Physiol 2023; 14:1165450. [PMID: 37250115 PMCID: PMC10213912 DOI: 10.3389/fphys.2023.1165450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 04/26/2023] [Indexed: 05/31/2023] Open
Abstract
In real-time electroencephalography (EEG) analysis, the problem of observing dynamic changes and the problem of binary classification is a promising direction. EEG energy and complexity are important evaluation metrics in brain death determination in the field of EEG analysis. We developed two algorithms, dynamic turning tangent empirical mode decomposition to compute EEG energy and dynamic approximate entropy to compute EEG complexity for brain death determination. The developed algorithm is applied to analyze 50 EEG data of coma patients and 50 EEG data of brain death patients. The validity of the dynamic analysis is confirmed by the accuracy rate derived from the comparison with turning tangent empirical mode decomposition and approximate entropy algorithms. We evaluated the EEG data of three patients using the built diagnostic system. The experimental results visually showed that the EEG energy ratio was higher in a coma state than that in brain death, while the complexity was lower than that in brain death.
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Affiliation(s)
- Ran Zhang
- Saitama Institute of Technology, Saitama, Japan
| | - Linfeng Sui
- Saitama Institute of Technology, Saitama, Japan
- RIKEN Center for Advanced Intelligence Project (AIP), Tokyo, Japan
| | | | - Jianting Cao
- Saitama Institute of Technology, Saitama, Japan
- RIKEN Center for Advanced Intelligence Project (AIP), Tokyo, Japan
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Ein Shoka AA, Dessouky MM, El-Sayed A, Hemdan EED. EEG seizure detection: concepts, techniques, challenges, and future trends. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-31. [PMID: 37362745 PMCID: PMC10071471 DOI: 10.1007/s11042-023-15052-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 08/07/2022] [Accepted: 02/27/2023] [Indexed: 06/28/2023]
Abstract
A central nervous system disorder is usually referred to as epilepsy. In epilepsy brain activity becomes abnormal, leading to times of abnormal behavior or seizures, and at times loss of awareness. Consequently, epilepsy patients face problems in daily life due to precautions they must take to adapt to this condition, particularly when they use heavy equipment, e.g., vehicle derivation. Epilepsy studies rely primarily on electroencephalography (EEG) signals to evaluate brain activity during seizures. It is troublesome and time-consuming to manually decide the location of seizures in EEG signals. The automatic detection framework is one of the principal tools to help doctors and patients take appropriate precautions. This paper reviews the epilepsy mentality disorder and the types of seizure, preprocessing operations that are performed on EEG data, a generally extracted feature from the signal, and a detailed view on classification procedures used in this problem and provide insights on the difficulties and future research directions in this innovative theme. Therefore, this paper presents a review of work on recent methods for the epileptic seizure process along with providing perspectives and concepts to researchers to present an automated EEG-based epileptic seizure detection system using IoT and machine learning classifiers for remote patient monitoring in the context of smart healthcare systems. Finally, challenges and open research points in EEG seizure detection are investigated.
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Affiliation(s)
- Athar A. Ein Shoka
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
| | - Mohamed M. Dessouky
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
- Department of Computer Science & Artificial Intelligence, College of Computer Science and Engineering, University of Jeddah, Jeddah, Saudi Arabia
| | - Ayman El-Sayed
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
| | - Ezz El-Din Hemdan
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
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Visalini K, Alagarsamy S, Nagarajan D. Neonatal seizure detection using deep belief networks from multichannel EEG data. Neural Comput Appl 2023. [DOI: 10.1007/s00521-023-08254-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Gao Y, Liu A, Cui X, Qian R, Chen X. A general sample-weighted framework for epileptic seizure prediction. Comput Biol Med 2022; 150:106169. [PMID: 36252368 DOI: 10.1016/j.compbiomed.2022.106169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 09/16/2022] [Accepted: 10/01/2022] [Indexed: 11/18/2022]
Abstract
OBJECTIVE Effective epileptic seizure prediction can make the patients know the onset of the seizure in advance to take timely preventive measures. Many studies based on machine learning methods have been proposed to tackle this problem and achieve significant progress in recent years. However, most studies treat each EEG training sample's contribution to the model as equal, while different samples have different predictive effects on epileptic seizures (e.g., preictal samples from different times). To this end, in this paper, we propose a general sample-weighted framework for patient-specific epileptic seizure prediction. METHODS Specifically, we define the mapping from the sample weights of training sets to the performance of the validation sets as the fitness function to be optimized. Then, the genetic algorithm is employed to optimize this fitness function and obtain the optimal sample weights. Finally, we obtain the final model by using the training sets with optimized sample weights. RESULTS To evaluate the effectiveness of our framework, we conduct extensive experiments on both traditional machine learning methods and prevalent deep learning methods. Our framework can significantly improve performance based on these methods. Among them, our framework based on Transformer achieves an average sensitivity of 94.6%, an average false prediction rate of 0.06/h, and an average AUC of 0.939 in 12 pediatric patients from the CHB-MIT database with the leave-one-out method, which outperforms the state-of-the-art methods. CONCLUSION This study provides new insights into the field of epileptic seizure prediction by considering the discrepancies between EEG samples. Moreover, we develop a general sample-weighted framework, which applies to almost all classical classification methods and can significantly improve performance based on these methods.
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Affiliation(s)
- Yikai Gao
- Epilepsy Center, Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230001, China; School of Information Science and Technology, University of Science and Technology of China (USTC), Hefei 230027, China
| | - Aiping Liu
- School of Information Science and Technology, University of Science and Technology of China (USTC), Hefei 230027, China; USTC IAT-Huami Joint Laboratory for Brain-Machine Intelligence, Institute of Advanced Technology, University of Science and Technology of China, Hefei 230088, China.
| | - Xinrui Cui
- School of Information Science and Technology, University of Science and Technology of China (USTC), Hefei 230027, China
| | - Ruobing Qian
- Epilepsy Center, Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230001, China
| | - Xun Chen
- Epilepsy Center, Department of Neurosurgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230001, China; School of Information Science and Technology, University of Science and Technology of China (USTC), Hefei 230027, China; USTC IAT-Huami Joint Laboratory for Brain-Machine Intelligence, Institute of Advanced Technology, University of Science and Technology of China, Hefei 230088, China.
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Wu X, Zhang T, Zhang L, Qiao L. Epileptic seizure prediction using successive variational mode decomposition and transformers deep learning network. Front Neurosci 2022; 16:982541. [PMID: 36225738 PMCID: PMC9548615 DOI: 10.3389/fnins.2022.982541] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/24/2022] [Indexed: 12/01/2022] Open
Abstract
As one of the most common neurological disorders, epilepsy causes great physical and psychological damage to the patients. The long-term recurrent and unprovoked seizures make the prediction necessary. In this paper, a novel approach for epileptic seizure prediction based on successive variational mode decomposition (SVMD) and transformers is proposed. SVMD is extended to multidimensional form for time-frequency analysis of multi-channel signals. It could adaptively extract common band-limited intrinsic modes among all channels on different time scales by solving a variational optimization problem. In the proposed seizure prediction method, data are first decomposed into multiple modes on different time scales by multivariate SVMD, and then, irrelevant modes are removed for preprocessing. Finally, power spectrum of denoised data is input to a pre-trained bidirectional encoder representations from transformers (BERTs) for prediction. The BERT could identify the mode information related to epileptic seizures in time-frequency domain. It shows fair prediction performance on an intracranial EEG dataset with the average sensitivity of 0.86 and FPR of 0.18/h.
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Affiliation(s)
- Xiao Wu
- School of Mathematics Science, Liaocheng University, Liaocheng, China
| | - Tinglin Zhang
- School of Mathematics Science, Liaocheng University, Liaocheng, China
| | - Limei Zhang
- School of Computer Science and Technology, Shandong Jianzhu University, Jinan, China
| | - Lishan Qiao
- School of Mathematics Science, Liaocheng University, Liaocheng, China
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Identifying Patients with Epilepsy Having Depression/Anxiety Disorder Using Common Spatial Patterns of Functional EEG Networks. J Med Biol Eng 2022. [DOI: 10.1007/s40846-022-00726-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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15
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Zazzaro G, Pavone L. Machine Learning Characterization of Ictal and Interictal States in EEG Aimed at Automated Seizure Detection. Biomedicines 2022; 10:biomedicines10071491. [PMID: 35884796 PMCID: PMC9312966 DOI: 10.3390/biomedicines10071491] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 06/15/2022] [Accepted: 06/22/2022] [Indexed: 11/16/2022] Open
Abstract
Background: The development of automated seizure detection methods using EEG signals could be of great importance for the diagnosis and the monitoring of patients with epilepsy. These methods are often patient-specific and require high accuracy in detecting seizures but also very low false-positive rates. The aim of this study is to evaluate the performance of a seizure detection method using EEG signals by investigating its performance in correctly identifying seizures and in minimizing false alarms and to determine if it is generalizable to different patients. Methods: We tested the method on about two hours of preictal/ictal and about ten hours of interictal EEG recordings of one patient from the Freiburg Seizure Prediction EEG database using machine learning techniques for data mining. Then, we tested the obtained model on six other patients of the same database. Results: The method achieved very high performance in detecting seizures (close to 100% of correctly classified positive elements) with a very low false-positive rate when tested on one patient. Furthermore, the model portability or transfer analysis revealed that the method achieved good performance in one out of six patients from the same dataset. Conclusions: This result suggests a strategy to discover clusters of similar patients, for which it would be possible to train a general-purpose model for seizure detection.
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Affiliation(s)
- Gaetano Zazzaro
- C.I.R.A.—Italian Aerospace Research Centre, Via Maiorise s.n.c., 81043 Capua, Italy;
| | - Luigi Pavone
- I.R.C.C.S. Neuromed, Via Atinense, 18, 86077 Pozzilli, Italy
- Correspondence:
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Enhanced Feature Extraction-based CNN Approach for Epileptic Seizure Detection from EEG Signals. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:3491828. [PMID: 35340257 PMCID: PMC8942662 DOI: 10.1155/2022/3491828] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 01/30/2022] [Accepted: 02/05/2022] [Indexed: 11/18/2022]
Abstract
One of the most common neurological disorders is epilepsy, which disturbs the nerve cell activity in the brain, causing seizures. Electroencephalography (EEG) signals are used to detect epilepsy and are considered standard techniques to diagnose epilepsy conditions. EEG monitors and records the brain activity of epilepsy patients, and these recordings are used in the diagnosis of epilepsy. However, extracting the information from the EEG recordings manually for detecting epileptic seizures is a difficult cumbersome, error-prone, and labor-intensive task. These negative attributes of the manual process increase the demand for implementing an automated model for the seizure detection process, which can classify seizure and nonseizures from EEG signals to help in the timely identification of epilepsy. Recently, deep learning (DL) and machine learning (ML) techniques have been used in the automatic detection of epileptic seizures because of their superior classification abilities. ML and DL algorithms can accurately classify different seizure conditions from large-scale EEG data and provide appropriate results for neurologists. This work presents a feature extraction-based convolutional neural network (CNN) to sense and classify different types of epileptic seizures from EEG signals. Different features are analyzed to classify seizures via EEG signals. Simulation analysis was managed to investigate the classification performance of the hybrid CNN-RNN model in terms of different achievement metrics such as accuracy, precision, recall, f1 score, and false-positive rate. The results validate the efficacy of the CNN-RNN model for seizure detection.
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Mohamed A, Hassan M, M’Saoubi R, Attia H. Tool Condition Monitoring for High-Performance Machining Systems-A Review. SENSORS (BASEL, SWITZERLAND) 2022; 22:2206. [PMID: 35336377 PMCID: PMC8950983 DOI: 10.3390/s22062206] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/04/2022] [Accepted: 03/10/2022] [Indexed: 12/20/2022]
Abstract
In the era of the "Industry 4.0" revolution, self-adjusting and unmanned machining systems have gained considerable interest in high-value manufacturing industries to cope with the growing demand for high productivity, standardized part quality, and reduced cost. Tool condition monitoring (TCM) systems pave the way for automated machining through monitoring the state of the cutting tool, including the occurrences of wear, cracks, chipping, and breakage, with the aim of improving the efficiency and economics of the machining process. This article reviews the state-of-the-art TCM system components, namely, means of sensing, data acquisition, signal conditioning and processing, and monitoring models, found in the recent open literature. Special attention is given to analyzing the advantages and limitations of current practices in developing wireless tool-embedded sensor nodes, which enable seamless implementation and Industrial Internet of Things (IIOT) readiness of TCM systems. Additionally, a comprehensive review of the selection of dimensionality reduction techniques is provided due to the lack of clear recommendations and shortcomings of various techniques developed in the literature. Recent attempts for TCM systems' generalization and enhancement are discussed, along with recommendations for possible future research avenues to improve TCM systems accuracy, reliability, functionality, and integration.
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Affiliation(s)
- Ayman Mohamed
- Department of Mechanical Engineering, McGill University, Montreal, QC H3A 0C3, Canada; (A.M.); (H.A.)
| | - Mahmoud Hassan
- Advanced Material Removal Processes, Aerospace Manufacturing Technologies Center (AMTC), National Research Council Canada, Ottawa, ON K1A 0R6, Canada
| | - Rachid M’Saoubi
- R&D Material and Technology Development, Seco Tools AB, SE-73782 Fagersta, Sweden;
| | - Helmi Attia
- Department of Mechanical Engineering, McGill University, Montreal, QC H3A 0C3, Canada; (A.M.); (H.A.)
- Advanced Material Removal Processes, Aerospace Manufacturing Technologies Center (AMTC), National Research Council Canada, Ottawa, ON K1A 0R6, Canada
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18
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Khan SI, Qaisar SM, Pachori RB. Automated classification of valvular heart diseases using FBSE-EWT and PSR based geometrical features. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103445] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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19
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Seismic Random Noise Denoising Using Mini-Batch Multivariate Variational Mode Decomposition. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:2132732. [PMID: 35256873 PMCID: PMC8898116 DOI: 10.1155/2022/2132732] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 01/20/2022] [Accepted: 01/21/2022] [Indexed: 11/25/2022]
Abstract
Seismic noise attenuation plays an important role in seismic interpretation. The empirical mode decomposition, synchrosqueezing wavelet transform, variational mode decomposition, etc., are often applied trace by trace. Multivariate empirical mode decomposition, multivariate synchrosqueezing wavelet transform, and multivariate variational mode decomposition were proposed for lateral continuity consideration. Due to large input data, mini-batch multivariate variational mode decomposition is proposed in this paper. The proposed method takes advantages both of variational mode decomposition and multivariate variational mode decomposition. This proposed method firstly segments the input data into a series of smaller ones with no overlapping and then applies multivariate variational mode decomposition to these smaller ones. High frequency-domain noise is filtered through sifting. Finally, the denoised smaller ones are concatenated to form components (or intrinsic mode functions) of the input signal. Synthetic and field data experiments validate the proposed method with different batch sizes and achieve higher signal-to-noise ratio than the variational mode decomposition method.
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20
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Jana GC, Agrawal A, Pattnaik PK, Sain M. DWT-EMD Feature Level Fusion Based Approach over Multi and Single Channel EEG Signals for Seizure Detection. Diagnostics (Basel) 2022; 12:diagnostics12020324. [PMID: 35204415 PMCID: PMC8871311 DOI: 10.3390/diagnostics12020324] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 01/19/2022] [Accepted: 01/25/2022] [Indexed: 02/04/2023] Open
Abstract
Brain Computer Interface technology enables a pathway for analyzing EEG signals for seizure detection. EEG signal decomposition, features extraction and machine learning techniques are more familiar in seizure detection. However, selecting decomposition technique and concatenation of their features for seizure detection is still in the state-of-the-art phase. This work proposes DWT-EMD Feature level Fusion-based seizure detection approach over multi and single channel EEG signals and studied the usability of discrete wavelet transform (DWT) and empirical mode decomposition (EMD) feature fusion with respect to individual DWT and EMD features over classifiers SVM, SVM with RBF kernel, decision tree and bagging classifier for seizure detection. All classifiers achieved an improved performance over DWT-EMD feature level fusion for two benchmark seizure detection EEG datasets. Detailed quantification results have been mentioned in the Results section.
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Affiliation(s)
- Gopal Chandra Jana
- Interactive Technologies & Multimedia Research Lab, Department of Information Technology, CC-II, Indian Institute of Information Technology-Allahabad, Prayagraj 211015, India; (G.C.J.); (A.A.)
| | - Anupam Agrawal
- Interactive Technologies & Multimedia Research Lab, Department of Information Technology, CC-II, Indian Institute of Information Technology-Allahabad, Prayagraj 211015, India; (G.C.J.); (A.A.)
| | - Prasant Kumar Pattnaik
- School of Computer Engineering, Kalinga Institute of Industrial Technology, Bhubaneswar 751024, India;
| | - Mangal Sain
- Division of Computer Engineering, Dongseo University, 47 Jurye-Ro, Sasang-Gu, Busan 47011, Korea
- Correspondence: ; Tel.: +82-1028591344
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21
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Cherian R, Kanaga EG. Theoretical and Methodological Analysis of EEG based Seizure Detection and Prediction: An Exhaustive Review. J Neurosci Methods 2022; 369:109483. [DOI: 10.1016/j.jneumeth.2022.109483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 01/13/2022] [Accepted: 01/13/2022] [Indexed: 02/07/2023]
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22
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Anuragi A, Singh Sisodia D, Pachori RB. Epileptic-seizure classification using phase-space representation of FBSE-EWT based EEG sub-band signals and ensemble learners. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103138] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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23
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Dubey R, Kumar M, Upadhyay A, Pachori RB. Automated diagnosis of muscle diseases from EMG signals using empirical mode decomposition based method. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103098] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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24
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Prabhakar SK, Lee SW. SASDL and RBATQ: Sparse Autoencoder with Swarm based Deep Learning and Reinforcement based Q-learning for EEG Classification. IEEE OPEN JOURNAL OF ENGINEERING IN MEDICINE AND BIOLOGY 2022; 3:58-68. [PMID: 35770240 PMCID: PMC9135179 DOI: 10.1109/ojemb.2022.3161837] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 02/20/2022] [Accepted: 03/17/2022] [Indexed: 11/23/2022] Open
Abstract
The most vital information about the electrical activities of the brain can be obtained with the help of Electroencephalography (EEG) signals. It is quite a powerful tool to analyze the neural activities of the brain and various neurological disorders like epilepsy, schizophrenia, sleep related disorders, parkinson disease etc. can be investigated well with the help of EEG signals. Goal: In this paper, two versatile deep learning methods are proposed for the efficient classification of epilepsy and schizophrenia from EEG datasets. Methods: The main advantage of using deep learning when compared to other machine learning algorithms is that it has the capability to accomplish feature engineering on its own. Swarm intelligence is also a highly useful technique to solve a wide range of real-world, complex, and non-linear problems. Therefore, taking advantage of these factors, the first method proposed is a Sparse Autoencoder (SAE) with swarm based deep learning method and it is named as (SASDL) using Particle Swarm Optimization (PSO) technique, Cuckoo Search Optimization (CSO) technique and Bat Algorithm (BA) technique; and the second technique proposed is the Reinforcement Learning based on Bidirectional Long-Short Term Memory (BiLSTM), Attention Mechanism, Tree LSTM and Q learning, and it is named as (RBATQ) technique. Results and Conclusions: Both these two novel deep learning techniques are tested on epilepsy and schizophrenia EEG datasets and the results are analyzed comprehensively, and a good classification accuracy of more than 93% is obtained for all the datasets.
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Affiliation(s)
| | - Seong-Whan Lee
- Department of Artificial IntelligenceKorea University Seoul 02841 South Korea
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25
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Maimaiti B, Meng H, Lv Y, Qiu J, Zhu Z, Xie Y, Li Y, Yu-Cheng, Zhao W, Liu J, Li M. An Overview of EEG-based Machine Learning Methods in Seizure Prediction and Opportunities for Neurologists in this Field. Neuroscience 2021; 481:197-218. [PMID: 34793938 DOI: 10.1016/j.neuroscience.2021.11.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 11/04/2021] [Accepted: 11/08/2021] [Indexed: 11/16/2022]
Abstract
The unpredictability of epileptic seizures is one of the most problematic aspects of the field of epilepsy. Methods or devices capable of detecting seizures minutes before they occur may help prevent injury or even death and significantly improve the quality of life. Machine learning (ML) is an emerging technology that can markedly enhance algorithm performance by interpreting data. ML has gained increasing attention from medical researchers in recent years. Its epilepsy applications range from the localization of the epileptic region, predicting the medical or surgical outcome of epilepsy, and automated electroencephalography (EEG) analysis to seizure prediction. While ML has good prospects with regard to detecting epileptic seizures via EEG signals, many clinicians are still unfamiliar with this field. This work briefly summarizes the history and recent significant progress made in this field and clarifies the essential components of the automatic seizure detection system using ML methodologies for clinicians. This review also proposes how neurologists can actively contribute to ensure improvements in seizure prediction using EEG-based ML.
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Affiliation(s)
- Buajieerguli Maimaiti
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Hongmei Meng
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China.
| | - Yudan Lv
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Jiqing Qiu
- Department of Neurological Surgery, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Zhanpeng Zhu
- Department of Neurological Surgery, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Yinyin Xie
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Yue Li
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Yu-Cheng
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Weixuan Zhao
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Jiayu Liu
- Department of Neurology and Neuroscience Center, First Hospital of Jilin University, Changchun, Jilin, People's Republic of China
| | - Mingyang Li
- Department of Communication Engineering, Jilin University, Changchun, Jilin, People's Republic of China.
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Eltrass AS, Tayel MB, EL-qady AF. Automatic epileptic seizure detection approach based on multi-stage Quantized Kernel Least Mean Square filters. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.103031] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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27
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Automatic detection of epileptic seizure events using the time-frequency features and machine learning. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102916] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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28
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Epileptic seizure detection using novel Multilayer LSTM Discriminant Network and dynamic mode Koopman decomposition. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102723] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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29
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Ozdemir MA, Cura OK, Akan A. Epileptic EEG Classification by Using Time-Frequency Images for Deep Learning. Int J Neural Syst 2021; 31:2150026. [PMID: 34039254 DOI: 10.1142/s012906572150026x] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Epilepsy is one of the most common brain disorders worldwide. The most frequently used clinical tool to detect epileptic events and monitor epilepsy patients is the EEG recordings. There have been proposed many computer-aided diagnosis systems using EEG signals for the detection and prediction of seizures. In this study, a novel method based on Fourier-based Synchrosqueezing Transform (SST), which is a high-resolution time-frequency (TF) representation, and Convolutional Neural Network (CNN) is proposed to detect and predict seizure segments. SST is based on the reassignment of signal components in the TF plane which provides highly localized TF energy distributions. Epileptic seizures cause sudden energy discharges which are well represented in the TF plane by using the SST method. The proposed SST-based CNN method is evaluated using the IKCU dataset we collected, and the publicly available CHB-MIT dataset. Experimental results demonstrate that the proposed approach yields high average segment-based seizure detection precision and accuracy rates for both datasets (IKCU: 98.99% PRE and 99.06% ACC; CHB-MIT: 99.81% PRE and 99.63% ACC). Additionally, SST-based CNN approach provides significantly higher segment-based seizure prediction performance with 98.54% PRE and 97.92% ACC than similar approaches presented in the literature using the CHB-MIT dataset.
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Affiliation(s)
- Mehmet Akif Ozdemir
- Department of Biomedical Engineering, Izmir Katip Celebi University, Cigli 35620, Izmir, Turkey
| | - Ozlem Karabiber Cura
- Department of Biomedical Engineering, Izmir Katip Celebi University, Cigli 35620, Izmir, Turkey
| | - Aydin Akan
- Department of Electrical and Electronics Eng., Izmir University of Economics, Balcova 35330, Izmir, Turkey
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Alhudhaif A. A novel multi-class imbalanced EEG signals classification based on the adaptive synthetic sampling (ADASYN) approach. PeerJ Comput Sci 2021; 7:e523. [PMID: 34084928 PMCID: PMC8157152 DOI: 10.7717/peerj-cs.523] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 04/14/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Brain signals (EEG-Electroencephalography) are a gold standard frequently used in epilepsy prediction. It is crucial to predict epilepsy, which is common in the community. Early diagnosis is essential to reduce the treatment process of the disease and to keep the process healthier. METHODS In this study, a five-classes dataset was used: EEG signals from different individuals, healthy EEG signals from tumor document, EEG signal with epilepsy, EEG signal with eyes closed, and EEG signal with eyes open. Four different methods have been proposed to classify five classes of EEG signals. In the first approach, the EEG signal was first divided into four different bands (beta, alpha, theta, and delta), and then 25 time-domain features were extracted from each band, and the main EEG signal and these extracted features were combined to obtain 125-time domain features (feature extraction). Using the Random Forests classifier, EEG activities were classified into five classes. In the second approach, each One-Against-One (OVO) approach with 125 attributes was split into ten parts, pairwise, and then each piece was classified with the Random Forests classifier. The majority voting scheme was used to combine decisions from the ten classifiers. In the third proposed method, each One-Against-All (OVA) approach with 125 attributes was divided into five parts, and then each piece was classified with the Random Forests classifier. The majority voting scheme was used to combine decisions from the five classifiers. In the fourth proposed approach, each One-Against-All (OVA) approach with 125 attributes was divided into five parts. Since each piece obtained had an imbalanced data distribution, an adaptive synthetic (ADASYN) sampling approach was used to stabilize each piece. Then, each balanced piece was classified with the Random Forests classifier. To combine the decisions obtanied from each classifier, the majority voting scheme has been used. RESULTS The first approach achieved 71.90% classification success in classifying five-class EEG signals. The second approach achieved a classification success of 91.08% in classifying five-class EEG signals. The third method achieved 89% success, while the fourth proposed approach achieved 91.72% success. The results obtained show that the proposed fourth approach (the combination of the ADASYN sampling approach and Random Forest Classifier) achieved the best success in classifying five class EEG signals. This proposed method could be used in the detection of epilepsy events in the EEG signals.
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31
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Khan NA, Ali S, Choi K. An instantaneous frequency and group delay based feature for classifying EEG signals. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102562] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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32
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B. Indira P, D. Krishna R. Optimized adaptive neuro fuzzy inference system (OANFIS) based EEG signal analysis for seizure recognition on FPGA. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Puxeddu MG, Petti M, Astolfi L. A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks. Front Syst Neurosci 2021; 15:624183. [PMID: 33732115 PMCID: PMC7956967 DOI: 10.3389/fnsys.2021.624183] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 01/21/2021] [Indexed: 12/21/2022] Open
Abstract
Modular organization is an emergent property of brain networks, responsible for shaping communication processes and underpinning brain functioning. Moreover, brain networks are intrinsically multilayer since their attributes can vary across time, subjects, frequency, or other domains. Identifying the modular structure in multilayer brain networks represents a gateway toward a deeper understanding of neural processes underlying cognition. Electroencephalographic (EEG) signals, thanks to their high temporal resolution, can give rise to multilayer networks able to follow the dynamics of brain activity. Despite this potential, the community organization has not yet been thoroughly investigated in brain networks estimated from EEG. Furthermore, at the state of the art, there is still no agreement about which algorithm is the most suitable to detect communities in multilayer brain networks, and a way to test and compare them all under a variety of conditions is lacking. In this work, we perform a comprehensive analysis of three algorithms at the state of the art for multilayer community detection (namely, genLouvain, DynMoga, and FacetNet) as compared with an approach based on the application of a single-layer clustering algorithm to each slice of the multilayer network. We test their ability to identify both steady and dynamic modular structures. We statistically evaluate their performances by means of ad hoc benchmark graphs characterized by properties covering a broad range of conditions in terms of graph density, number of clusters, noise level, and number of layers. The results of this simulation study aim to provide guidelines about the choice of the more appropriate algorithm according to the different properties of the brain network under examination. Finally, as a proof of concept, we show an application of the algorithms to real functional brain networks derived from EEG signals collected at rest with closed and open eyes. The test on real data provided results in agreement with the conclusions of the simulation study and confirmed the feasibility of multilayer analysis of EEG-based brain networks in both steady and dynamic conditions.
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Affiliation(s)
- Maria Grazia Puxeddu
- Department of Computer, Control and Management Engineering "Antonio Ruberti", University of Rome Sapienza, Rome, Italy.,IRCCS Fondazione Santa Lucia, Rome, Italy
| | - Manuela Petti
- Department of Computer, Control and Management Engineering "Antonio Ruberti", University of Rome Sapienza, Rome, Italy.,IRCCS Fondazione Santa Lucia, Rome, Italy
| | - Laura Astolfi
- Department of Computer, Control and Management Engineering "Antonio Ruberti", University of Rome Sapienza, Rome, Italy.,IRCCS Fondazione Santa Lucia, Rome, Italy
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Rashed-Al-Mahfuz M, Moni MA, Uddin S, Alyami SA, Summers MA, Eapen V. A Deep Convolutional Neural Network Method to Detect Seizures and Characteristic Frequencies Using Epileptic Electroencephalogram (EEG) Data. IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE-JTEHM 2021; 9:2000112. [PMID: 33542859 PMCID: PMC7851059 DOI: 10.1109/jtehm.2021.3050925] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 12/24/2020] [Accepted: 01/03/2021] [Indexed: 11/09/2022]
Abstract
BACKGROUND Diagnosing epileptic seizures using electroencephalogram (EEG) in combination with deep learning computational methods has received much attention in recent years. However, to date, deep learning techniques in seizure detection have not been effectively harnessed due to sub-optimal classifier design and improper representation of the time-domain signal. METHODS In this study, we focused on designing and evaluating deep convolutional neural network-based classifiers for seizure detection. Signal-to-image conversion methods are proposed to convert time-domain EEG signal to a time-frequency represented image to prepare the input data for classification. We proposed and evaluated three classification methods comprising of five classifiers to determine which is more accurate for seizure detection. Accuracy data were then compared to previous studies of the same dataset. RESULTS We found our proposed model and signal-to-image conversion method outperformed all previous studies in the most cases. The proposed FT-VGG16 classifier achieved the highest average classification accuracy of 99.21%. In addition, the Shapley Additive exPlanations (SHAP) analysis approach was employed to uncover the feature frequencies in the EEG that contribute most to improved classification accuracy. To the best of our knowledge, this is the first study to compute the contribution of frequency components to target seizure classification; thus allowing the identification of distinct seizure-related EEG frequency components compared to normal EEG measures. CONCLUSION Thus our developed deep convolutional neural network models are useful to detect seizures and characteristic frequencies using EEG data collected from the patients and this model could be clinically applicable for the automated seizures detection.
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Affiliation(s)
- Md Rashed-Al-Mahfuz
- Department of Computer Science and EngineeringUniversity of RajshahiRajshahi6205Bangladesh
| | - Mohammad Ali Moni
- Faculty of Medicine, School of PsychiatryUniversity of New South WalesSydneyNSW2052Australia
| | - Shahadat Uddin
- Complex Systems Research Group, Faculty of EngineeringThe University of SydneyDarlingtonNSW2008Australia
| | - Salem A Alyami
- Department of Mathematics and StatisticsImam Mohammad Ibn Saud Islamic UniversityRiyadh11432Saudi Arabia
| | | | - Valsamma Eapen
- Faculty of Medicine, School of PsychiatryUniversity of New South WalesSydneyNSW2052Australia
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Ech-Choudany Y, Scida D, Assarar M, Landré J, Bellach B, Morain-Nicolier F. Dissimilarity-based time–frequency distributions as features for epileptic EEG signal classification. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102268] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Rocha PL, Barros AK, Silva WS, Sousa GC, Sousa P, da Silva AM. Classification of the interictal state with hypsarrhythmia from Zika Virus Congenital Syndrome and of the ictal state from epilepsy in childhood without hypsarrhythmia in EEGs using entropy measures. Comput Biol Med 2020; 126:104014. [PMID: 33010735 DOI: 10.1016/j.compbiomed.2020.104014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 09/16/2020] [Accepted: 09/17/2020] [Indexed: 10/23/2022]
Abstract
This paper intends to classify the interictal state with hypsarrhythmia in patients with Zika Virus Congenital Syndrome (ZVCS) and of the ictal state in patients with epilepsy in childhood without the presence of hypsarrhythmia. Hypsarrhythmia is a specific interictal chaotic morphology, and the correct distinction between these two EEG states is crucial to improving the cognitive development of these epileptic patients. The proposed approach was assessed using the proprietary database of Casa Ninar, which contains data regarding children from northeastern Brazil born with microcephaly caused by the Zika virus. We also used data from the CHB-MIT database. Fundamental rhythms of the EEG signal δ, θ, α, and β were analyzed, and then decomposed by Discrete Wavelet Transform, in which 45 mother wavelet functions were tested to determine the most appropriate function to represent the EEG signals in the hypsarrhythmia interictal and ictal states. We extracted Shannon, Log Energy, Norm, and Sure entropy measures of the subbands as relevant features, and the combinations among them were applied in the state-of-the-art machine learning methods. The combination of Sure entropy with Shannon entropy, or with Log Energy and Norm, extracted from the δ rhythm, allowed for the best linear separability between the classes in most of the classifiers, obtaining 100% accuracy, sensitivity, and specificity.
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Affiliation(s)
- Priscila L Rocha
- Department of Electrical Engineering, Federal University of Maranhão (UFMA), São Luís, MA, 65080-805, Brazil.
| | - Allan K Barros
- Department of Electrical Engineering, Federal University of Maranhão (UFMA), São Luís, MA, 65080-805, Brazil.
| | - Washington S Silva
- Department of ElectroElectronics, Federal Institute of Maranhão (IFMA), São Luís, MA, 65030-005, Brazil.
| | - Gean C Sousa
- Department of Electrical Engineering, Federal University of Maranhão (UFMA), São Luís, MA, 65080-805, Brazil.
| | - Patrícia Sousa
- Department of Medicine, University Hospital of the Federal University of Maranhão, São Luís, MA, 65080-805, Brazil.
| | - Antônio M da Silva
- Department of Public Health, Federal University of Maranhão, São Luís, MA, 65080-805, Brazil.
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Carvalho VR, Moraes MF, Braga AP, Mendes EM. Evaluating five different adaptive decomposition methods for EEG signal seizure detection and classification. Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2020.102073] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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38
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Automatic seizure detection using neutrosophic classifier. Phys Eng Sci Med 2020; 43:1019-1028. [PMID: 32696433 DOI: 10.1007/s13246-020-00901-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 07/12/2020] [Indexed: 10/23/2022]
Abstract
Seizures are the most common brain dysfunction. EEG is required for their detection and treatment initially. Studies proved that if seizures are detected at their early stage, proper and effective treatment can be given to patients. Automatic detection of seizures using the EEG signal was a very powerful area of research during the last decade. Various techniques have been proposed in the literature for feature extraction and classification of recorded EEG signals for seizure detection. However, to achieve reliable performance, some challenges in this area need to be addressed. In this work, an algorithm for seizure detection has been proposed, which is a combination of frequency-domain features and neutrosophic logic-based k-means nearest neighbor (NL-k-NN) classifier. An EEG database, collected at All India Institutes of Medical Sciences (AIIMS), New Delhi, has been used to test the performance of the proposed algorithm. The consistency in the performance of the proposed algorithm has been checked by applying it to the well-known Bonn University and CHB-MIT scalp EEG datasets. The classification accuracies of 98.16%, 100%, and 89.06% were achieved when the proposed algorithm was tested with AIIMS, Bonn University, and CHB-MIT datasets, respectively. The main contribution of this study is that a novel neutrosophic classifier is proposed in the field of seizure detection, for improvement in reliability and precision. The accuracy of the NL-k-NN classifier has further been established by comparing it with the reported results of linear discriminant analysis (LDA), support vector machine (SVM), and traditional k-NN classifiers.
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Nabil D, Benali R, Bereksi Reguig F. Epileptic seizure recognition using EEG wavelet decomposition based on nonlinear and statistical features with support vector machine classification. ACTA ACUST UNITED AC 2020; 65:133-148. [PMID: 31536031 DOI: 10.1515/bmt-2018-0246] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 06/13/2019] [Indexed: 01/09/2023]
Abstract
Epileptic seizure (ES) is a neurological brain dysfunction. ES can be detected using the electroencephalogram (EEG) signal. However, visual inspection of ES using long-time EEG recordings is a difficult, time-consuming and a costly procedure. Thus, automatic epilepsy recognition is of primary importance. In this paper, a new method is proposed for automatic ES recognition using short-time EEG recordings. The method is based on first decomposing the EEG signals on sub-signals using discrete wavelet transform. Then, from the obtained sub-signals, different non-linear parameters such as approximate entropy (ApEn), largest Lyapunov exponents (LLE) and statistical parameters are determined. These parameters along with phase entropies, calculated through higher order spectrum analysis, are used as an input vector of a multi-class support vector machine (MSVM) for ES recognition. The proposed method is evaluated using the standard EEG database developed by the Department of Epileptology, University of Bonn, Germany. The evaluation is carried out through a large number of classification experiments. Different statistical metrics namely Sensitivity (Se), Specificity (Sp) and classification accuracy (Ac) are calculated and compared to those obtained in the scientific research literature. The obtained results show that the proposed method achieves high accuracies, which are as good as the best existing state-of-the-art methods studied using the same EEG database.
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Affiliation(s)
- Dib Nabil
- Biomedical Engineering Laboratory, Faculty of Technology, Abou Bekr Belkaid University, Tlemcen 13048, Algeria
| | - Radhwane Benali
- Biomedical Engineering Laboratory, Faculty of Technology, Abou Bekr Belkaid University, Tlemcen 13048, Algeria
| | - Fethi Bereksi Reguig
- Biomedical Engineering Laboratory, Faculty of Technology, Abou Bekr Belkaid University, Tlemcen 13048, Algeria
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40
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Savadkoohi M, Oladunni T, Thompson L. A machine learning approach to epileptic seizure prediction using Electroencephalogram (EEG) Signal. Biocybern Biomed Eng 2020; 40:1328-1341. [PMID: 36213693 PMCID: PMC9540452 DOI: 10.1016/j.bbe.2020.07.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
This study investigates the properties of the brain electrical activity from different recording regions and physiological states for seizure detection. Neurophysiologists will find the work useful in the timely and accurate detection of epileptic seizures of their patients. We explored the best way to detect meaningful patterns from an epileptic Electroencephalogram (EEG). Signals used in this work are 23.6 s segments of 100 single channel surface EEG recordings collected with the sampling rate of 173.61 Hz. The recorded signals are from five healthy volunteers with eyes closed and eyes open, and intracranial EEG recordings from five epilepsy patients during the seizure-free interval as well as epileptic seizures. Feature engineering was done using; i) feature extraction of each EEG wave in time, frequency and time-frequency domains via Butterworth filter, Fourier Transform and Wavelet Transform respectively and, ii) feature selection with T-test, and Sequential Forward Floating Selection (SFFS). SVM and KNN learning algorithms were applied to classify preprocessed EEG signal. Performance comparison was based on Accuracy, Sensitivity and Specificity. Our experiments showed that SVM has a slight edge over KNN.
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Affiliation(s)
- Marzieh Savadkoohi
- School of Engineering and Applied Sciences, University of District of Columbia, Washington DC, USA
| | - Timothy Oladunni
- Department of Computer Science, University of District of Columbia, Washington DC, USA
| | - Lara Thompson
- Department of Mechanical Engineering, Biomedical Engineering Program, University of the District of Columbia, Washington DC
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Krishnan PT, Joseph Raj AN, Balasubramanian P, Chen Y. Schizophrenia detection using MultivariateEmpirical Mode Decomposition and entropy measures from multichannel EEG signal. Biocybern Biomed Eng 2020. [DOI: 10.1016/j.bbe.2020.05.008] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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42
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Mahjoub C, Le Bouquin Jeannès R, Lajnef T, Kachouri A. Epileptic seizure detection on EEG signals using machine learning techniques and advanced preprocessing methods. ACTA ACUST UNITED AC 2020; 65:33-50. [PMID: 31469648 DOI: 10.1515/bmt-2019-0001] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 05/07/2019] [Indexed: 11/15/2022]
Abstract
Electroencephalography (EEG) is a common tool used for the detection of epileptic seizures. However, the visual analysis of long-term EEG recordings is characterized by its subjectivity, time-consuming procedure and its erroneous detection. Various epileptic seizure detection algorithms have been proposed to deal with such issues. In this study, a novel automatic seizure-detection approach is proposed. Three different strategies are suggested to the user whereby he/she could choose the appropriate one for a given classification problem. Indeed, the feature extraction step, including both linear and nonlinear measures, is performed either directly from the EEG signals, or from the derived sub-bands of tunable-Q wavelet transform (TQWT), or even from the intrinsic mode functions (IMFs) of multivariate empirical mode decomposition (MEMD). The classification procedure is executed using a support vector machine (SVM). The performance of the proposed method is evaluated through a publicly available database from which six binary classification cases are formulated to discriminate between healthy, seizure and non-seizure EEG signals. Our results show high performance in terms of accuracy (ACC), sensitivity (SEN) and specificity (SPE) compared to the state-of-the-art approaches. Thus, the proposed approach for automatic seizure detection can be considered as a valuable alternative to existing methods, able to alleviate the overload of visual analysis and accelerate the seizure detection.
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Affiliation(s)
- Chahira Mahjoub
- LETI-ENIS, University of Sfax, Street of Soukra, 3038 Sfax, Tunisia
| | - Régine Le Bouquin Jeannès
- Univ Rennes, INSERM, LTSI-UMR 1099, F-35000 Rennes, France.,Univ Rennes, INSERM, CRIBs, F-35000 Rennes, France
| | - Tarek Lajnef
- Psychology Department, University of Montreal, Montreal, QC, Canada
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A Novel Deep Neural Network for Robust Detection of Seizures Using EEG Signals. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2020; 2020:9689821. [PMID: 32328157 PMCID: PMC7166278 DOI: 10.1155/2020/9689821] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2020] [Accepted: 03/06/2020] [Indexed: 11/30/2022]
Abstract
The detection of recorded epileptic seizure activity in electroencephalogram (EEG) segments is crucial for the classification of seizures. Manual recognition is a time-consuming and laborious process that places a heavy burden on neurologists, and hence, the automatic identification of epilepsy has become an important issue. Traditional EEG recognition models largely depend on artificial experience and are of weak generalization ability. To break these limitations, we propose a novel one-dimensional deep neural network for robust detection of seizures, which composes of three convolutional blocks and three fully connected layers. Thereinto, each convolutional block consists of five types of layers: convolutional layer, batch normalization layer, nonlinear activation layer, dropout layer, and max-pooling layer. Model performance is evaluated on the University of Bonn dataset, which achieves the accuracy of 97.63%∼99.52% in the two-class classification problem, 96.73%∼98.06% in the three-class EEG classification problem, and 93.55% in classifying the complicated five-class problem.
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Soler A, Muñoz-Gutiérrez PA, Bueno-López M, Giraldo E, Molinas M. Low-Density EEG for Neural Activity Reconstruction Using Multivariate Empirical Mode Decomposition. Front Neurosci 2020; 14:175. [PMID: 32180702 PMCID: PMC7059768 DOI: 10.3389/fnins.2020.00175] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 02/17/2020] [Indexed: 11/13/2022] Open
Abstract
Several approaches can be used to estimate neural activity. The main differences between them concern the a priori information used and its sensitivity to high noise levels. Empirical mode decomposition (EMD) has been recently applied to electroencephalography EEG-based neural activity reconstruction to provide a priori time-frequency information to improve the estimation of neural activity. EMD has the specific ability to identify independent oscillatory modes in non-stationary signals with multiple oscillatory components. However, attempts to use EMD in EEG analysis have not yet provided optimal reconstructions, due to the intrinsic mode-mixing problem of EMD. Several studies have used single-channel analysis, whereas others have used multiple-channel analysis for other applications. Here, we present the results of multiple-channel analysis using multivariate empirical mode decomposition (MEMD) to reduce the mode-mixing problem and provide useful a priori time-frequency information for the reconstruction of neuronal activity using several low-density EEG electrode montages. The methods were evaluated using real and synthetic EEG data, in which the reconstructions were performed using the multiple sparse priors (MSP) algorithm with EEG electrode montages of 32, 16, and 8 electrodes. The quality of the source reconstruction was assessed using the Wasserstein metric. A comparison of the solutions without pre-processing and those after applying MEMD showed the source reconstructions to be improved using MEMD as a priori information for the low-density montages of 8 and 16 electrodes. The mean source reconstruction error on a real EEG dataset was reduced by 59.42 and 66.04% for the 8 and 16 electrode montages, respectively, and that on a simulated EEG with three active sources, by 87.31 and 31.45% for the same electrode montages.
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Affiliation(s)
- Andres Soler
- Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway
| | - Pablo A. Muñoz-Gutiérrez
- Department of Electronic Engineering, Universidad del Quindío, Armenia, Colombia
- Department of Electrical Engineering, Universidad Tecnológica de Pereira, Pereira, Colombia
| | - Maximiliano Bueno-López
- Department of Electronics, Instrumentation, and Control, Universidad del Cauca, Popayán, Colombia
| | - Eduardo Giraldo
- Department of Electrical Engineering, Universidad Tecnológica de Pereira, Pereira, Colombia
| | - Marta Molinas
- Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway
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Li X, Tao S, Jamal-Omidi S, Huang Y, Lhatoo SD, Zhang GQ, Cui L. Detection of Postictal Generalized Electroencephalogram Suppression: Random Forest Approach. JMIR Med Inform 2020; 8:e17061. [PMID: 32130173 PMCID: PMC7055778 DOI: 10.2196/17061] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 12/20/2019] [Accepted: 12/29/2019] [Indexed: 02/07/2023] Open
Abstract
BACKGROUND Sudden unexpected death in epilepsy (SUDEP) is second only to stroke in neurological events resulting in years of potential life lost. Postictal generalized electroencephalogram (EEG) suppression (PGES) is a period of suppressed brain activity often occurring after generalized tonic-clonic seizure, a most significant risk factor for SUDEP. Therefore, PGES has been considered as a potential biomarker for SUDEP risk. Automatic PGES detection tools can address the limitations of labor-intensive, and sometimes inconsistent, visual analysis. A successful approach to automatic PGES detection must overcome computational challenges involved in the detection of subtle amplitude changes in EEG recordings, which may contain physiological and acquisition artifacts. OBJECTIVE This study aimed to present a random forest approach for automatic PGES detection using multichannel human EEG recordings acquired in epilepsy monitoring units. METHODS We used a combination of temporal, frequency, wavelet, and interchannel correlation features derived from EEG signals to train a random forest classifier. We also constructed and applied confidence-based correction rules based on PGES state changes. Motivated by practical utility, we introduced a new, time distance-based evaluation method for assessing the performance of PGES detection algorithms. RESULTS The time distance-based evaluation showed that our approach achieved a 5-second tolerance-based positive prediction rate of 0.95 for artifact-free signals. For signals with different artifact levels, our prediction rates varied from 0.68 to 0.81. CONCLUSIONS We introduced a feature-based, random forest approach for automatic PGES detection using multichannel EEG recordings. Our approach achieved increasingly better time distance-based performance with reduced signal artifact levels. Further study is needed for PGES detection algorithms to perform well irrespective of the levels of signal artifacts.
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Affiliation(s)
- Xiaojin Li
- Department of Neurology, University of Texas Health Science Center, Houston, TX, United States
| | - Shiqiang Tao
- Department of Neurology, University of Texas Health Science Center, Houston, TX, United States
| | - Shirin Jamal-Omidi
- Department of Neurology, University of Texas Health Science Center, Houston, TX, United States
| | - Yan Huang
- Department of Computer Science, University of Kentucky, Lexington, KY, United States
| | - Samden D Lhatoo
- Department of Neurology, University of Texas Health Science Center, Houston, TX, United States
| | - Guo-Qiang Zhang
- Department of Neurology, University of Texas Health Science Center, Houston, TX, United States
- School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, United States
| | - Licong Cui
- School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, United States
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Karabiber Cura O, Kocaaslan Atli S, Türe HS, Akan A. Epileptic seizure classifications using empirical mode decomposition and its derivative. Biomed Eng Online 2020; 19:10. [PMID: 32059668 PMCID: PMC7023773 DOI: 10.1186/s12938-020-0754-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Accepted: 02/06/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Epilepsy is one of the most common neurological disorders associated with disruption of brain activity. In the classification and detection of epileptic seizures, electroencephalography (EEG) measurements, which record the electrical activities of the brain, are frequently used. Empirical mode decomposition (EMD) and its derivative, ensemble EMD (EEMD) are recently developed methods used to decompose non-stationary and nonlinear signals such as EEG into a finite number of oscillations called intrinsic mode functions (IMFs). Our main objective in this study is to present a hybrid IMF selection method combining four different approaches (energy, correlation, power spectral distance, and statistical significance measures), and investigate the effect of selected IMFs extracted by EMD and EEMD on the classification. We have applied the proposed IMF selection approach on the classification of EEG signals recorded from epilepsy patients who are under treatment at our collaborator hospital. Multichannel EEG signals collected from epilepsy patients are decomposed into IMFs, and then IMF selection was performed. Finally, time- and spectral-domain, and nonlinear features are extracted and feature sets are created for the classification. RESULTS The maximum classification accuracies obtained using various combinations of IMFs were 94.56%, 95.63%, 96.8%, and 96.25% for SVM, KNN, naive Bayes, and logistic regression classifiers, respectively, by using EMD analysis; whereas, the EEMD approach has provided maximum classification accuracies of 96.06%, 97%, 97%, and 96.25% for SVM, KNN, naive Bayes, and logistic regression, respectively. Classification performance with the same features obtained using direct EEG signals instead of the decomposed IMFs was worse than the aforementioned 2 approaches for every combination. CONCLUSION Simulation results demonstrate that the proposed IMF selection approach affects the classification results. Also, EEMD provides a robust method for feature extraction from EEG signals in order to classify pre-seizure and seizure segments.
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Affiliation(s)
- Ozlem Karabiber Cura
- Department of Biomedical Engineering, Faculty of Engineering and Architecture, Izmir Katip Celebi University, Cigli, Izmir, Turkey
| | - Sibel Kocaaslan Atli
- Department of Biophysics, Faculty of Medicine, Izmir Katip Celebi University, Cigli, Izmir, Turkey
| | - Hatice Sabiha Türe
- Department of Neurology, Faculty of Medicine, Izmir Katip Celebi University, Cigli, Izmir, Turkey
| | - Aydin Akan
- Department of Electrical and Electronics Engineering, Faculty of Engineering, Izmir University of Economics, Balcova, Izmir, Turkey.
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Dash DP, Kolekar MH, Jha K. Multi-channel EEG based automatic epileptic seizure detection using iterative filtering decomposition and Hidden Markov Model. Comput Biol Med 2019; 116:103571. [PMID: 32001007 DOI: 10.1016/j.compbiomed.2019.103571] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 11/30/2019] [Accepted: 11/30/2019] [Indexed: 11/28/2022]
Abstract
Electroencephalography (EEG) is a non-invasive method for the analysis of neurological disorders. Epilepsy is one of the most widespread neurological disorders and often characterized by repeated seizures. This paper intends to conduct an iterative filtering based decomposition of EEG signals to improve upon the accuracy of seizure detection. The proposed approach is evaluated using All India Institute of Medical Science (AIIMS) Patna EEG database and online CHB-MIT surface EEG database. The iterative filtering decomposition technique is applied to extract sub-components from the EEG signal. The feature set obtained from each segmented intrinsic mode function consists of 2-D power spectral density and time-domain features dynamic mode decomposition power, variance, and Katz fractal dimension. The Hidden Markov Model (HMM) based probabilistic model has been designed using the above-stated features representing the seizure and non-seizure EEG events. The EEG signal is classified based on the maximum score obtained from the individual feature-based classifiers. The maximum score derived from each HMM classifier gives the final class information. The proposed decomposition of EEG signals achieved 99.60% and 99.74% accuracy in seizure detection for the online CHB-MIT surface EEG database and AIIMS Patna EEG database, respectively.
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Affiliation(s)
- Deba Prasad Dash
- Department of Electrical Engineering, Indian Institute of Technology, Patna, India.
| | | | - Kamlesh Jha
- Department of Physiology, All India Institute of Medical Sciences, Patna, India.
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49
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Identification of epileptic seizures in EEG signals using time-scale decomposition (ITD), discrete wavelet transform (DWT), phase space reconstruction (PSR) and neural networks. Artif Intell Rev 2019. [DOI: 10.1007/s10462-019-09755-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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50
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Performance evaluation of DWT based sigmoid entropy in time and frequency domains for automated detection of epileptic seizures using SVM classifier. Comput Biol Med 2019; 110:127-143. [DOI: 10.1016/j.compbiomed.2019.05.016] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2018] [Revised: 05/20/2019] [Accepted: 05/20/2019] [Indexed: 12/16/2022]
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