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Manning MC, Holcomb RE, Payne RW, Stillahn JM, Connolly BD, Katayama DS, Liu H, Matsuura JE, Murphy BM, Henry CS, Crommelin DJA. Stability of Protein Pharmaceuticals: Recent Advances. Pharm Res 2024; 41:1301-1367. [PMID: 38937372 DOI: 10.1007/s11095-024-03726-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 06/03/2024] [Indexed: 06/29/2024]
Abstract
There have been significant advances in the formulation and stabilization of proteins in the liquid state over the past years since our previous review. Our mechanistic understanding of protein-excipient interactions has increased, allowing one to develop formulations in a more rational fashion. The field has moved towards more complex and challenging formulations, such as high concentration formulations to allow for subcutaneous administration and co-formulation. While much of the published work has focused on mAbs, the principles appear to apply to any therapeutic protein, although mAbs clearly have some distinctive features. In this review, we first discuss chemical degradation reactions. This is followed by a section on physical instability issues. Then, more specific topics are addressed: instability induced by interactions with interfaces, predictive methods for physical stability and interplay between chemical and physical instability. The final parts are devoted to discussions how all the above impacts (co-)formulation strategies, in particular for high protein concentration solutions.'
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Affiliation(s)
- Mark Cornell Manning
- Legacy BioDesign LLC, Johnstown, CO, USA.
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA.
| | - Ryan E Holcomb
- Legacy BioDesign LLC, Johnstown, CO, USA
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
| | - Robert W Payne
- Legacy BioDesign LLC, Johnstown, CO, USA
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
| | - Joshua M Stillahn
- Legacy BioDesign LLC, Johnstown, CO, USA
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
| | | | | | | | | | | | - Charles S Henry
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
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2
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Kuroiwa I, Maki Y, Matsuo K, Annaka M. Protein Preferential Solvation in (Sucralose + Water) Mixtures. J Phys Chem B 2024; 128:676-683. [PMID: 38197901 DOI: 10.1021/acs.jpcb.3c06317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
Addition of sugars such as sucrose to aqueous protein solutions generally stabilizes proteins against thermal denaturation by preferential exclusion of sugars from proteins (preferential hydration of proteins). In this study, we investigated the effect of sucralose, a chlorinated sucrose derivative, on protein stability and preferential solvation. Circular dichroism and small-angle X-ray scattering measurements showed that sucrose increased the denaturation temperature of myoglobin and was preferentially excluded from the protein, whereas sucralose decreased the denaturation temperature of myoglobin and was preferentially adsorbed to the protein. No clear evidence was obtained for the indirect effects of sucralose on protein destabilization via the structure and properties of solvent water from the physicochemical properties (mass density, sound velocity, viscosity, and osmolality) of aqueous sucralose solutions; therefore, we concluded that a direct protein-sucralose interaction induced protein destabilization.
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Affiliation(s)
- Isamu Kuroiwa
- Graduate School of Science, Kyushu University, Fukuoka 819-0395, Japan
| | - Yasuyuki Maki
- Faculty of Science, Kyusyu University, Fukuoka 819-0395, Japan
| | - Koichi Matsuo
- Hiroshima Synchrotron Radiation Center, Hiroshima University, Higashi-Hiroshima 739-0046, Hiroshima, Japan
| | - Masahiko Annaka
- Faculty of Science, Kyusyu University, Fukuoka 819-0395, Japan
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3
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Simon JM, Krüger P, Schnell SK, Vlugt TJH, Kjelstrup S, Bedeaux D. Kirkwood-Buff integrals: From fluctuations in finite volumes to the thermodynamic limit. J Chem Phys 2022; 157:130901. [PMID: 36209013 DOI: 10.1063/5.0106162] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The Kirkwood-Buff theory is a cornerstone of the statistical mechanics of liquids and solutions. It relates volume integrals over the radial distribution function, so-called Kirkwood-Buff integrals (KBIs), to particle number fluctuations and thereby to various macroscopic thermodynamic quantities such as the isothermal compressibility and partial molar volumes. Recently, the field has seen a strong revival with breakthroughs in the numerical computation of KBIs and applications to complex systems such as bio-molecules. One of the main emergent results is the possibility to use the finite volume KBIs as a tool to access finite volume thermodynamic quantities. The purpose of this Perspective is to shed new light on the latest developments and discuss future avenues.
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Affiliation(s)
- J-M Simon
- Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR-6303 CNRS - Université de Bourgogne Franche-Comté, F-21078 Dijon, France
| | - P Krüger
- Graduate School of Science and Engineering, Molecular Chirality Research Center, Chiba University, Chiba 263-8522, Japan
| | - S K Schnell
- Department of Materials Science and Engineering, NTNU - Norwegian University of Science and Technology, N-7491 Trondheim, Norway
| | - T J H Vlugt
- Process & Energy Department, Delft University of Technology, Leeghwaterstraat 39, 2628CB Delft, The Netherlands
| | - S Kjelstrup
- Center of Excellence PoreLab, Department of Chemistry, Faculty of Natural Sciences, NTNU - Norwegian University of Science and Technology, Trondheim, Norway
| | - D Bedeaux
- Center of Excellence PoreLab, Department of Chemistry, Faculty of Natural Sciences, NTNU - Norwegian University of Science and Technology, Trondheim, Norway
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5
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Reid JESJ, Aquino PHG, Walker AJ, Karadakov PB, Shimizu S. Statistical Thermodynamics Unveils How Ions Influence an Aqueous Diels‐Alder Reaction. Chemphyschem 2019; 20:1538-1544. [DOI: 10.1002/cphc.201900024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 03/15/2019] [Indexed: 11/06/2022]
Affiliation(s)
- Joshua E. S. J. Reid
- York Structural Biology Laboratory Department of ChemistryUniversity of York Heslington York YO10 5DD United Kingdom
- Bioniqs Ltd., BioCity Nottingham Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - Pedro H. G. Aquino
- York Structural Biology Laboratory Department of ChemistryUniversity of York Heslington York YO10 5DD United Kingdom
| | - Adam J. Walker
- Bioniqs Ltd., BioCity Nottingham Pennyfoot Street Nottingham NG1 1GF United Kingdom
| | - Peter B. Karadakov
- Department of ChemistryUniversity of York Heslington York YO10 5DD United Kingdom
| | - Seishi Shimizu
- York Structural Biology Laboratory Department of ChemistryUniversity of York Heslington York YO10 5DD United Kingdom
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6
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Harton K, Shimizu S. Statistical thermodynamics of casein aggregation: Effects of salts and water. Biophys Chem 2019; 247:34-42. [DOI: 10.1016/j.bpc.2019.02.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2019] [Revised: 02/08/2019] [Accepted: 02/11/2019] [Indexed: 11/30/2022]
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Nicol TWJ, Matubayasi N, Shimizu S. Origin of non-linearity in phase solubility: solubilisation by cyclodextrin beyond stoichiometric complexation. Phys Chem Chem Phys 2017; 18:15205-17. [PMID: 27206059 DOI: 10.1039/c6cp01582d] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The low solubility of drugs, which poses a serious problem in drug development, can in part be overcome by the use of cyclodextrins (CDs) and their derivatives. Here, the key to solubilisation is identified as the formation of inclusion complexes with the drug molecule. If inclusion complexation were the only contribution to drug solubility, it would increase linearly with CD concentration (as per the Higuchi-Connors model); this is because inclusion complexation is a 1 : 1 stoichiometric process. However, solubility curves often deviate from this linearity, whose mechanism is yet to be understood. Here we aim to clarify the origin of such non-linearity, based on the Kirkwood-Buff and the McMillan-Mayer theories of solutions. The rigorous statistical thermodynamic theory shows that non-linearity of solubilisation can be rationalised by two contributions: CD-drug interaction and the drug-induced change of CD-CD interaction.
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Affiliation(s)
- Thomas W J Nicol
- York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York YO10 5DD, UK.
| | - Nobuyuki Matubayasi
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan and Elements Strategy Initiative for Catalysts and Batteries, Kyoto University, Katsura, Kyoto 615-8520, Japan
| | - Seishi Shimizu
- York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York YO10 5DD, UK.
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8
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Shimizu S, Smith PE. How Osmolytes Counteract Pressure Denaturation on a Molecular Scale. Chemphyschem 2017; 18:2243-2249. [PMID: 28678423 PMCID: PMC5626881 DOI: 10.1002/cphc.201700503] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 05/30/2017] [Indexed: 11/08/2022]
Abstract
Life in the deep sea exposes enzymes to high hydrostatic pressure, which decreases their stability. For survival, deep sea organisms tend to accumulate various osmolytes, most notably trimethylamine N-oxide used by fish, to counteract pressure denaturation. However, exactly how these osmolytes work remains unclear. Here, a rigorous statistical thermodynamics approach is used to clarify the mechanism of osmoprotection. It is shown that the weak, nonspecific, and dynamic interactions of water and osmolytes with proteins can be characterized only statistically, and that the competition between protein-osmolyte and protein-water interactions is crucial in determining conformational stability. Osmoprotection is driven by a stronger exclusion of osmolytes from the denatured protein than from the native conformation, and water distribution has no significant effect on these changes at low osmolyte concentrations.
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Affiliation(s)
- Seishi Shimizu
- York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Paul E Smith
- Department of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas, 66506-0401, USA
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9
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Shimizu S, Stenner R, Matubayasi N. Gastrophysics: Statistical thermodynamics of biomolecular denaturation and gelation from the Kirkwood-Buff theory towards the understanding of tofu. Food Hydrocoll 2017. [DOI: 10.1016/j.foodhyd.2016.07.022] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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10
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Shimizu S, Matubayasi N. Unifying hydrotropy under Gibbs phase rule. Phys Chem Chem Phys 2017; 19:23597-23605. [DOI: 10.1039/c7cp02132a] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A rational approach, aiming at constructing a unified theory of hydrotropy, will be presented based upon the first principles of statistical thermodynamics.
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Affiliation(s)
- Seishi Shimizu
- York Structural Biology Laboratory
- Department of Chemistry
- University of York
- York YO10 5DD
- UK
| | - Nobuyuki Matubayasi
- Division of Chemical Engineering
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
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11
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Shimizu S, Abbott S, Matubayasi N. Quantifying non-specific interactions between flavour and food biomolecules. Food Funct 2017; 8:2999-3009. [DOI: 10.1039/c7fo00313g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Non-specific protein–flavour interactions can be captured by assumption-free statistical thermodynamics.
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Affiliation(s)
- Seishi Shimizu
- York Structural Biology Laboratory
- Department of Chemistry
- University of York
- Heslington
- UK
| | - Steven Abbott
- Steven Abbott TCNF Ltd
- Ipswich
- UK
- School of Mechanical Engineering
- University of Leeds
| | - Nobuyuki Matubayasi
- Division of Chemical Engineering
- Graduate School of Engineering Science
- Osaka University
- Toyonaka
- Japan
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12
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Nicol TWJ, Isobe N, Clark JH, Shimizu S. Statistical thermodynamics unveils the dissolution mechanism of cellobiose. Phys Chem Chem Phys 2017; 19:23106-23112. [DOI: 10.1039/c7cp04647b] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Statistical thermodynamic analysis of cellobiose solubility in aqueous salts sheds light on the mechanism of cellulose solubilization on a molecular scale.
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Affiliation(s)
- Thomas W. J. Nicol
- York Structural Biology Laboratory
- Department of Chemistry
- University of York
- York YO10 5DD
- UK
| | - Noriyuki Isobe
- Japan Agency for Marine-Earth Science and Technology (JAMSTEC)
- Yokosuka
- Japan
| | - James H. Clark
- Green Chemistry Centre of Excellence
- Department of Chemistry
- University of York
- York YO10 5DD
- UK
| | - Seishi Shimizu
- York Structural Biology Laboratory
- Department of Chemistry
- University of York
- York YO10 5DD
- UK
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Miyawaki O, Dozen M, Hirota K. Cooperative hydration effect causes thermal unfolding of proteins and water activity plays a key role in protein stability in solutions. J Biosci Bioeng 2016; 122:203-7. [DOI: 10.1016/j.jbiosc.2016.01.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2015] [Revised: 12/26/2015] [Accepted: 01/07/2016] [Indexed: 10/22/2022]
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14
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Excluded volume contribution to cosolvent-mediated modulation of macromolecular folding and binding reactions. Biophys Chem 2016; 209:1-8. [DOI: 10.1016/j.bpc.2015.11.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Revised: 10/31/2015] [Accepted: 11/01/2015] [Indexed: 11/19/2022]
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15
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Pallewela GN, Smith PE. Preferential Solvation in Binary and Ternary Mixtures. J Phys Chem B 2015; 119:15706-17. [DOI: 10.1021/acs.jpcb.5b10139] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Gayani N. Pallewela
- Department
of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, United States
| | - Paul E. Smith
- Department
of Chemistry, Kansas State University, 213 CBC Building, Manhattan, Kansas 66506, United States
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16
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Miyawaki O, Omote C, Matsuhira K. Thermodynamic analysis of sol-gel transition of gelatin in terms of water activity in various solutions. Biopolymers 2015. [DOI: 10.1002/bip.22706] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Osato Miyawaki
- Faculty of Bioresources and Environmental Sciences; Ishikawa Prefectural University; 1-308 Suematsu Nonoichi Ishikawa 921-8836 Japan
| | - Chiaki Omote
- Faculty of Bioresources and Environmental Sciences; Ishikawa Prefectural University; 1-308 Suematsu Nonoichi Ishikawa 921-8836 Japan
| | - Keiko Matsuhira
- Faculty of Bioresources and Environmental Sciences; Ishikawa Prefectural University; 1-308 Suematsu Nonoichi Ishikawa 921-8836 Japan
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17
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Thermodynamic analysis of osmolyte effect on thermal stability of ribonuclease A in terms of water activity. Biophys Chem 2013; 185:19-24. [PMID: 24292629 DOI: 10.1016/j.bpc.2013.10.004] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Revised: 10/21/2013] [Accepted: 10/23/2013] [Indexed: 11/22/2022]
Abstract
Thermal unfolding of ribonuclease A (RNase) was analyzed in various osmolyte solutions of glycine, proline, sarcosine, N,N-dimethylglycine, betaine, myo-inositol, taurine, and trimethylamine-N-oxide (TMAO). All the osmolytes tested stabilized the protein. The thermal unfolding curve was described well by the van't Hoff equation and the melting temperature and the enthalpy of protein unfolding were obtained. The Wyman-Tanford equation, which describes the unfolded-to-folded protein ratio as a function of water activity, was successfully applied to obtain a linear plot. In consideration of this experimentally obtained linearity, the Wyman-Tanford plot could be integrated to calculate the stabilization free energy of the protein (∆∆G) in the solution. The ∆∆G was proved to be described by the property of the microstructure around the protein surface, which is composed of the protein hydration, the cosolute-binding, and the preferential exclusion, and the property of the bulk solution; water activity. The m-values of osmolytes for protein unfolding were obtained from ∆∆G calculated. Among the osmolytes tested, myo-inositol showed the highest m-value.
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19
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Booth JJ, Abbott S, Shimizu S. Mechanism of hydrophobic drug solubilization by small molecule hydrotropes. J Phys Chem B 2012; 116:14915-21. [PMID: 23236952 DOI: 10.1021/jp309819r] [Citation(s) in RCA: 99] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Drugs that are poorly soluble in water can be solubilized by the addition of hydrotropes. Albeit known for almost a century, how they work at a molecular basis is still controversial due to the lack of a rigorous theoretical basis. To clear up this situation, a combination of experimental data and Fluctuation Theory of Solutions (FTS) has been employed; information on the interactions between all the molecular species present in the solution has been evaluated directly. FTS has identified two major factors of hydrotrope-induced solubilization: preferential hydrotrope-solute interaction and water activity depression. The former is dominated by hydrotrope-solute association, and the latter is enhanced by ionic dissociation and hindered by the self-aggregation of the hydrotropes. Moreover, in stark contrast to previous hypotheses, neither the change of solute hydration nor the water structure accounts for hydrotropy. Indeed, the rigorous FTS poses serious doubts over the other common hypothesis: self-aggregation of the hydrotrope hinders, rather than promotes, solubilization.
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Affiliation(s)
- Jonathan J Booth
- York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, United Kingdom
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Shao Q, Fan Y, Yang L, Gao YQ. Counterion Effects on the Denaturing Activity of Guanidinium Cation to Protein. J Chem Theory Comput 2012; 8:4364-73. [DOI: 10.1021/ct3002267] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Qiang Shao
- Institute of Theoretical and
Computational Chemistry, College of Chemistry and Molecular Engineering,
Beijing National Laboratory of Molecular Sciences, Peking University, Beijing 100871, China
- Drug Discovery and Design Center,
Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203,
China
| | - Yubo Fan
- Bioinformatics and
Bioengineering
Program, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, Texas 77030, United
States
| | - Lijiang Yang
- Institute of Theoretical and
Computational Chemistry, College of Chemistry and Molecular Engineering,
Beijing National Laboratory of Molecular Sciences, Peking University, Beijing 100871, China
| | - Yi Qin Gao
- Institute of Theoretical and
Computational Chemistry, College of Chemistry and Molecular Engineering,
Beijing National Laboratory of Molecular Sciences, Peking University, Beijing 100871, China
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21
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Shimizu S. The effect of urea on hydrophobic hydration: Preferential interaction and the enthalpy of transfer. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.10.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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