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Lee SY, Lee S, Kim SH, Chang H, Cho WY, Ryu MO, Choi J, Yoon HY, Seo KW. Deep learning-based evaluation of the severity of mitral regurgitation in canine myxomatous mitral valve disease patients using digital stethoscope recordings. BMC Vet Res 2025; 21:326. [PMID: 40336065 PMCID: PMC12060408 DOI: 10.1186/s12917-025-04802-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Accepted: 05/02/2025] [Indexed: 05/09/2025] Open
Abstract
BACKGROUND Myxomatous mitral valve disease (MMVD) represents the most prevalent cardiac disorder in dogs, frequently resulting in mitral regurgitation (MR) and congestive heart failure. Although echocardiography is the gold standard for diagnosis, it is an expensive tool that involves significant clinical training to ensure consistent application. Deep learning models offer an innovative approach to assessing MR using digital stethoscopic recordings, enabling early screening and precise prediction. Thus, in this study, we evaluated the effectiveness of a convolutional neural network 6 (CNN6) in providing an objective alternative to traditional methods for assessing MR. This study, conducted at the Seoul National University Veterinary Medicine Teaching Hospital, included 460 dogs with MMVD, classified according to the American College of Veterinary Internal Medicine guidelines. Phonocardiogram signals were recorded using digital stethoscopes and analyzed using the deep models CNN6, patch-mix audio spectrogram transformer (PaSST), and residual neural network (ResNET38), which were trained to categorize MR severity into mild, moderate, and severe based on MINE score. Performance metrics were calculated to evaluate model effectiveness. RESULTS The CNN6-Fbank model achieved an accuracy of 94.12% [95% confidence interval (CI): 94.11-93.12], specificity of 97.30% (95% CI: 97.30-97.34), sensitivity of 94.12% (95% CI: 93.74-94.50), precision of 92.63% (95% CI: 92.29-92.97), and F1 score of 93.32% (95% CI: 93.05-93.59), outperforming the PaSST and ResNet38 models overall and demonstrating robust performance across most metrics. CONCLUSIONS Deep learning models, particularly CNN6, can effectively assess MR severity in dogs with MMVD using digital stethoscope recordings. This approach provides a rapid, noninvasive, and reliable adjunct to echocardiography, potentially enhancing diagnosis and outcomes. Future studies should focus on broader clinical validation and real-time application of this technology.
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Affiliation(s)
- Soh-Yeon Lee
- Department of Veterinary Clinical Science, Laboratory of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea
| | - Sully Lee
- Department of Veterinary Clinical Science, Laboratory of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea
| | - Se-Hoon Kim
- Department of Veterinary Clinical Science, Laboratory of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea
| | | | | | - Min-Ok Ryu
- Department of Veterinary Clinical Science, Laboratory of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea
| | - Jihye Choi
- Department of Veterinary Medical Imaging, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea
| | - Hwa-Young Yoon
- Department of Veterinary Clinical Science, Laboratory of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea
| | - Kyoung-Won Seo
- Department of Veterinary Clinical Science, Laboratory of Veterinary Internal Medicine, College of Veterinary Medicine, Seoul National University, Seoul, 08826, Republic of Korea.
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Cetintav B, Yalcin A. Exploring equine behavior: Wearable sensors data and explainable AI for enhanced classification. J Equine Vet Sci 2025; 149:105568. [PMID: 40221060 DOI: 10.1016/j.jevs.2025.105568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2025] [Revised: 03/18/2025] [Accepted: 04/09/2025] [Indexed: 04/14/2025]
Abstract
Understanding equine behavior through advanced monitoring technologies is crucial for improving animal welfare, optimizing training strategies, and enabling early detection of health or stress-related issues. This study integrates wearable sensor data with Explainable Artificial Intelligence (XAI) techniques, particularly SHAP (Shapley Additive Explanations), to enhance interpretability in equine behavior classification. The data used in this study were sourced from an open-source dataset, ensuring transparency and reproducibility. Orginally, data were collected from 18 horses using sensor devices attached to a collar around the neck, including a three-axis accelerometer, gyroscope, and magnetometer, sampling at 100 Hz to capture a wide range of motion data. Our dataset consists of 17 equine behavior classes, including walking, grazing, and galloping. A multi-class classification framework was developed, employing machine learning models such as Random Forest, KNN, and XGBoost. The Random Forest model outperformed others with an accuracy of 82.3 %, demonstrating its effectiveness in distinguishing complex behaviors. A key novelty of this study is the use of SHAP for feature attribution analysis, allowing us to determine which sensor modalities contribute most to each behavior class. The SHAP analysis revealed that locomotion behaviors like 'galloping' were dominated by accelerometer features capturing motion intensity, while stationary behaviors like 'standing' relied primarily on magnetometer data for orientation detection. Stress-related behaviors, such as 'head-shaking,' were characterized by gyroscopic angular velocity, highlighting their dynamic nature. By leveraging SHAP to bridge the gap between "black-box" machine learning models and interpretable decision-making, this study provides actionable insights for real-time monitoring, stress detection, and veterinary interventions. The findings enhance the transparency and applicability of AI-driven animal behavior analysis, setting a new benchmark for explainable behavior classification in equine studies. By advancing both predictive accuracy and model interpretability, this research lays the groundwork for more comprehensive and trustworthy applications in equine welfare and veterinary decision-making.
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Affiliation(s)
- Bekir Cetintav
- Veterinary Faculty, Department of Biostatistics, Burdur Mehmet Akif Ersoy University, Istiklal Campus, 15030 Burdur, Türkiye.
| | - Ahmet Yalcin
- Institute of Science, Burdur Mehmet Akif Ersoy University, Istiklal Campus, 15030 Burdur, Türkiye.
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Nyquist ML, Fink LA, Mauldin GE, Coffman CR. Evaluation of a Novel Veterinary Dental Radiography Artificial Intelligence Software Program. J Vet Dent 2025; 42:118-127. [PMID: 38321886 DOI: 10.1177/08987564231221071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
There is a growing trend of artificial intelligence (AI) applications in veterinary medicine, with the potential to assist veterinarians in clinical decisions. A commercially available, AI-based software program (AISP) for detecting common radiographic dental pathologies in dogs and cats was assessed for agreement with two human evaluators. Furcation bone loss, periapical lucency, resorptive lesion, retained tooth root, attachment (alveolar bone) loss and tooth fracture were assessed. The AISP does not attempt to diagnose or provide treatment recommendations, nor has it been trained to identify other types of radiographic pathology. Inter-rater reliability for detecting pathologies was measured by absolute percent agreement and Gwet's agreement coefficient. There was good to excellent inter-rater reliability among all raters, suggesting the AISP performs similarly at detecting the specified pathologies compared to human evaluators. Sensitivity and specificity for the AISP were assessed using human evaluators as the reference standard. The results revealed a trend of low sensitivity and high specificity, suggesting the AISP may produce a high rate of false negatives and may not be a good tool for initial screening. However, the low rate of false positives produced by the AISP suggests it may be beneficial as a "second set of eyes" because if it detects the specific pathology, there is a high likelihood that the pathology is present. With an understanding of the AISP, as an aid and not a substitute for veterinarians, the technology may increase dental radiography utilization and diagnostic potential.
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Affiliation(s)
| | - Lisa A Fink
- Arizona Veterinary Dental Specialists, Scottsdale, AZ, USA
| | | | - Curt R Coffman
- Arizona Veterinary Dental Specialists, Scottsdale, AZ, USA
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Llamas-Amor E, Ortín-Bustillo A, López-Martínez MJ, Muñoz-Prieto A, Manzanilla EG, Arense J, Miralles-Chorro A, Fuentes P, Martínez-Subiela S, González-Bulnes A, Goyena E, Martínez-Martínez A, Cerón JJ, Tecles F. Use of Saliva Analytes as a Predictive Model to Detect Diseases in the Pig: A Pilot Study. Metabolites 2025; 15:130. [PMID: 39997755 PMCID: PMC11857661 DOI: 10.3390/metabo15020130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2025] [Revised: 02/10/2025] [Accepted: 02/11/2025] [Indexed: 02/26/2025] Open
Abstract
BACKGROUND/OBJECTIVES Saliva is gaining importance as a diagnostic sample in pigs. The aim of this research was to evaluate a panel of salivary analytes in three porcine diseases and establish predictive models to detect them. METHODS Saliva samples were obtained from healthy pigs (n = 97) and pigs affected by meningitis due to Streptococcus suis (n = 118), diarrhea due to enterotoxigenic Escherichia coli (ETEC, n = 77), and porcine reproductive and respiratory syndrome (PRRS, n = 52). The following biomarkers were analyzed: adenosine deaminase (ADA), haptoglobin (Hp), calprotectin (Calp), aldolase, alpha-amylase (sAA), lactate dehydrogenase (LDH), total protein (TP), and advanced oxidation protein products (AOPPs). Predictive models based on binary logistic regression and decision trees combining those analytes for detecting specific diseases were constructed. RESULTS The results showed a different biomarker profile between the groups. S. suis and ETEC pigs showed higher values of ADA, Hp, Calp, aldolase, sAA, LDH, and TP than healthy pigs. Pigs with PRRS showed higher values of Hp, Calp, sAA, and LDH than healthy animals. The constructed predictive models showed overall accuracies of over 78% and 87% for differentiating ETEC and PRRS, respectively, whereas the models did not accurately predict S. suis infection. CONCLUSIONS Salivary analytes show different changes in pigs depending on the disease, and the combination of these analytes can contribute to the prediction of different diseases. Further studies should be conducted in larger populations to confirm these findings and evaluate their possible practical applications.
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Affiliation(s)
- Eva Llamas-Amor
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
| | - Alba Ortín-Bustillo
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
| | - María José López-Martínez
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
| | - Alberto Muñoz-Prieto
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
| | - Edgar García Manzanilla
- Pig Development Department, Moorepark Animal and Grassland Research Centre, Teagasc, Irish Agriculture and Food Development Authority, P61 C996 Cork, Ireland;
- School of Veterinary Medicine, University College Dublin, D04 W6F6 Dublin, Ireland
| | - Julián Arense
- Institute for Biomedical Research of Murcia, IMIB-Arrixaca, 30120 Murcia, Spain;
| | - Aida Miralles-Chorro
- Anatomy and Compared Pathology Anatomy Department, Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain;
- Cátedra Universitaria Grupo Fuertes, 30100 Murcia, Spain;
| | - Pablo Fuentes
- Cátedra Universitaria Grupo Fuertes, 30100 Murcia, Spain;
| | - Silvia Martínez-Subiela
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
| | - Antonio González-Bulnes
- Departamento de Producción y Sanidad Animal, Facultad de Veterinaria, Universidad Cardenal Herrera-CEU, CEU Universities, C/Tirant lo Blanc, 7, 46115 Valencia, Spain;
- Cuarte S.L. Grupo Jorge, Ctra. De Logroño, Km 9.2, 50120 Zaragoza, Spain
| | - Elena Goyena
- Animal Health Department, Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain;
| | | | - José Joaquín Cerón
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
| | - Fernando Tecles
- Interdisciplinary Laboratory of Clinical Analysis (Interlab-UMU), Veterinary School, Regional Campus of International Excellence ‘Campus Mare Nostrum’, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain; (E.L.-A.); (A.O.-B.); (M.J.L.-M.); (A.M.-P.); (S.M.-S.); (J.J.C.)
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Da Silva AJ, Gunn E, Ramos PJG, Shiel RE, Bree L, Mooney CT. Comparison between typical primary and eunatraemic, eukalaemic hypoadrenocorticism: 92 cases. Ir Vet J 2024; 77:18. [PMID: 39342294 PMCID: PMC11439219 DOI: 10.1186/s13620-024-00280-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 09/17/2024] [Indexed: 10/01/2024] Open
Abstract
BACKGROUND Naturally occurring hypoadrenocorticism is an uncommon endocrine disorder in dogs but has significant morbidity and mortality. Some dogs present with apparent glucocorticoid deficiency alone as evidenced by eunatraemia and eukalaemia. Few studies have compared dogs with hypoadrenocorticism with or without electrolyte disturbances and there are no large case series of affected dogs from Ireland. METHODS Retrospective observational study. RESULTS Ninety-two cases diagnosed with hypoadrenocorticism subdivided into those with supportive electrolyte disturbances (Group 1; n = 72) and those without (Group 2; n = 20). Dogs in Group 1 were significantly (p = 0.001) younger (4.0 (3.0-6.0) years) than dogs in Group 2 (6.0 (4.75-8.25) years). Dogs in Group 1 presented significantly more commonly with vomiting (Group 1: 52/71 (73.2%), Group 2: 6/20 (30.0%); p < 0.001), total hyperproteinaemia (Group 1: 21/71 (29.6%), Group 2: 1/20 (5.0%); p = 0.023), increased urea (Group 1: 52/72 (72.2%), Group 2: 5/20 (25.0%); p < 0.001), increased creatinine (Group 1: 31/72 (43.1%), Group 2: 3/20 (15.0%); p = 0.021) and hyperphosphataemia (Group 1: 40/71 (56.3%), Group 2: 2/20 (10.0%); p < 0.001), and significantly less commonly with reticulocytosis (Group 1: 4/38 (10.5%), Group 2: 5/13 (38.5%), p = 0.023). An undetectable basal aldosterone concentration had a positive predictive value of 94.3% for diagnosing undetectable post-ACTH aldosterone concentration. Of the thirteen dogs in Group 2 that had aldosterone concentrations measured and secondary disease excluded, 7 (53.8%) had or subsequently developed evidence of aldosterone deficiency, although not always with electrolyte abnormalities. CONCLUSIONS Dogs with hypoadrenocorticism from Ireland are similar to other reported cases. An undetectable basal aldosterone concentration is highly predictive of mineralocorticoid deficiency. Dogs with apparent glucocorticoid deficiency alone can progress to more typical disease and should be monitored appropriately.
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Affiliation(s)
| | - Eilidh Gunn
- North Downs Specialist referrals, Bletchingley, UK
| | | | | | - Laura Bree
- London Veterinary Specialists, London, UK
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Farhoodimoghadam M, Reagan KL, Zwingenberger AL. Diagnosis and classification of portosystemic shunts: a machine learning retrospective case-control study. Front Vet Sci 2024; 11:1291318. [PMID: 38638645 PMCID: PMC11024426 DOI: 10.3389/fvets.2024.1291318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 03/21/2024] [Indexed: 04/20/2024] Open
Abstract
Diagnosis of portosystemic shunts (PSS) in dogs often requires multiple diagnostic tests, and available clinicopathologic tests have limitations in sensitivity and specificity. The objective of this study was to train and validate a machine learning model (MLM) that can accurately predict the presence of a PSS utilizing routinely collected demographic data and clinicopathologic features. Dogs diagnosed with PSS or control dogs tested for PSS but had the condition ruled out (non-PSS) were identified. Dogs were included if a complete blood count and serum chemistry panel were available from PSS diagnostic testing. Dogs with a PSS were subcategorized as having a single intrahepatic PSS, a single extrahepatic PSS, or multiple extrahepatic PSS. An extreme gradient boosting (XGboost) MLM was trained with data from 70% of the cases, and MLM performance was determined on the test set, comprising the remaining 30% of the case data. Two MLMs were created. The first was designed to predict the presence of any PSS (PSS MLM), and the second to predict the PSS subcategory (PSS SubCat MLM). The trained PSS MLM had a sensitivity of 94.3% (95% CI 90.1-96.8%) and specificity of 90.5% (95% CI 85.32-94.0%) for dogs in the test set. The area under the receiver operator characteristic curve (AUC) was 0.976 (95% CI; 0.964-0.989). The mean corpuscular hemoglobin, lymphocyte count, and serum globulin concentration were most important in prediction classification. The PSS SubCat MLM had an accuracy of 85.7% in determining the subtype of PSS of dogs in the test set, with variable sensitivity and specificity depending on PSS subtype. These MLMs have a high accuracy for diagnosing PSS; however, the prediction of PSS subclassification is less accurate. The MLMs can be used as a screening tool to increase or decrease the index of suspicion for PSS before confirmatory diagnostics such as advanced imaging are pursued.
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Affiliation(s)
- Makan Farhoodimoghadam
- Department of Computer Science, University of California, Davis, Davis, CA, United States
| | - Krystle L. Reagan
- Department of Veterinary Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, Davis, CA, United States
| | - Allison L. Zwingenberger
- Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California, Davis, Davis, CA, United States
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Akinsulie OC, Idris I, Aliyu VA, Shahzad S, Banwo OG, Ogunleye SC, Olorunshola M, Okedoyin DO, Ugwu C, Oladapo IP, Gbadegoye JO, Akande QA, Babawale P, Rostami S, Soetan KO. The potential application of artificial intelligence in veterinary clinical practice and biomedical research. Front Vet Sci 2024; 11:1347550. [PMID: 38356661 PMCID: PMC10864457 DOI: 10.3389/fvets.2024.1347550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 01/15/2024] [Indexed: 02/16/2024] Open
Abstract
Artificial intelligence (AI) is a fast-paced technological advancement in terms of its application to various fields of science and technology. In particular, AI has the potential to play various roles in veterinary clinical practice, enhancing the way veterinary care is delivered, improving outcomes for animals and ultimately humans. Also, in recent years, the emergence of AI has led to a new direction in biomedical research, especially in translational research with great potential, promising to revolutionize science. AI is applicable in antimicrobial resistance (AMR) research, cancer research, drug design and vaccine development, epidemiology, disease surveillance, and genomics. Here, we highlighted and discussed the potential impact of various aspects of AI in veterinary clinical practice and biomedical research, proposing this technology as a key tool for addressing pressing global health challenges across various domains.
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Affiliation(s)
- Olalekan Chris Akinsulie
- Faculty of Veterinary Medicine, University of Ibadan, Ibadan, Nigeria
- College of Veterinary Medicine, Washington State University, Pullman, WA, United States
| | - Ibrahim Idris
- Faculty of Veterinary Medicine, Usman Danfodiyo University, Sokoto, Nigeria
| | | | - Sammuel Shahzad
- College of Veterinary Medicine, Washington State University, Pullman, WA, United States
| | | | - Seto Charles Ogunleye
- Faculty of Veterinary Medicine, University of Ibadan, Ibadan, Nigeria
- Department of Population Medicine and Pathobiology, College of Veterinary Medicine, Mississippi State University, Starkville, MS, United States
| | - Mercy Olorunshola
- Department of Pharmaceutical Microbiology, University of Ibadan, Ibadan, Nigeria
| | - Deborah O. Okedoyin
- Department of Animal Sciences, North Carolina Agricultural and Technical State University, Greensboro, NC, United States
| | - Charles Ugwu
- College of Veterinary Medicine, Washington State University, Pullman, WA, United States
| | | | - Joy Olaoluwa Gbadegoye
- Department of Physiology, University of Tennessee Health Science Center, Memphis, TN, United States
| | - Qudus Afolabi Akande
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, United States
| | - Pius Babawale
- Department of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA, United States
| | - Sahar Rostami
- Department of Population Medicine and Pathobiology, College of Veterinary Medicine, Mississippi State University, Starkville, MS, United States
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Corsini A, Lunetta F, Alboni F, Drudi I, Faroni E, Fracassi F. Development and internal validation of diagnostic prediction models using machine-learning algorithms in dogs with hypothyroidism. Front Vet Sci 2023; 10:1292988. [PMID: 38169885 PMCID: PMC10758480 DOI: 10.3389/fvets.2023.1292988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 12/08/2023] [Indexed: 01/05/2024] Open
Abstract
Introduction Hypothyroidism can be easily misdiagnosed in dogs, and prediction models can support clinical decision-making, avoiding unnecessary testing and treatment. The aim of this study is to develop and internally validate diagnostic prediction models for hypothyroidism in dogs by applying machine-learning algorithms. Methods A single-institutional cross-sectional study was designed searching the electronic database of a Veterinary Teaching Hospital for dogs tested for hypothyroidism. Hypothyroidism was diagnosed based on suggestive clinical signs and thyroid function tests. Dogs were excluded if medical records were incomplete or a definitive diagnosis was lacking. Predictors identified after data processing were dermatological signs, alopecia, lethargy, hematocrit, serum concentrations of cholesterol, creatinine, total thyroxine (tT4), and thyrotropin (cTSH). Four models were created by combining clinical signs and clinicopathological variables expressed as quantitative (models 1 and 2) and qualitative variables (models 3 and 4). Models 2 and 4 included tT4 and cTSH, models 1 and 3 did not. Six different algorithms were applied to each model. Internal validation was performed using a 10-fold cross-validation. Apparent performance was evaluated by calculating the area under the receiver operating characteristic curve (AUROC). Results Eighty-two hypothyroid and 233 euthyroid client-owned dogs were included. The best performing algorithms were naive Bayes in model 1 (AUROC = 0.85; 95% confidence interval [CI] = 0.83-0.86) and in model 2 (AUROC = 0.98; 95% CI = 0.97-0.99), logistic regression in model 3 (AUROC = 0.88; 95% CI = 0.86-0.89), and random forest in model 4 (AUROC = 0.99; 95% CI = 0.98-0.99). Positive predictive value was 0.76, 0.84, 0.93, and 0.97 in model 1, 2, 3, and 4, respectively. Negative predictive value was 0.89, 0.89, 0.99, and 0.99 in model 1, 2, 3, and 4, respectively. Discussion Machine learning-based prediction models were accurate in predicting and quantifying the likelihood of hypothyroidism in dogs based on internal validation performed in a single-institution, but external validation is required to support the clinical applicability of these models.
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Affiliation(s)
- Andrea Corsini
- Department of Veterinary Medical Sciences, Alma Mater Studiorum-University of Bologna, Ozzano Emilia, Italy
- Department of Veterinary Sciences, University of Parma, Parma, Italy
| | - Francesco Lunetta
- Department of Veterinary Medical Sciences, Alma Mater Studiorum-University of Bologna, Ozzano Emilia, Italy
| | - Fabrizio Alboni
- Department of Statistical Sciences, Alma Mater Studiorum-University of Bologna, Bologna, Italy
| | - Ignazio Drudi
- Department of Statistical Sciences, Alma Mater Studiorum-University of Bologna, Bologna, Italy
| | - Eugenio Faroni
- Department of Veterinary Medical Sciences, Alma Mater Studiorum-University of Bologna, Ozzano Emilia, Italy
| | - Federico Fracassi
- Department of Veterinary Medical Sciences, Alma Mater Studiorum-University of Bologna, Ozzano Emilia, Italy
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Laboratory Diagnosis of Thyroid and Adrenal Disease. Vet Clin North Am Small Anim Pract 2023; 53:207-224. [DOI: 10.1016/j.cvsm.2022.08.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Reagan KL, McLarty E, Marks SL, Sebastian J, McGill J, Gilor C. Characterization of clinicopathologic and abdominal ultrasound findings in dogs with glucocorticoid deficient hypoadrenocorticism. Vet Med (Auckl) 2022; 36:1947-1957. [DOI: 10.1111/jvim.16564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Accepted: 09/21/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Krystle L. Reagan
- Department of Medicine and Epidemiology, School of Veterinary Medicine University of California—Davis Davis California USA
| | - Ehren McLarty
- Department of Veterinary Surgery and Radiologic Sciences, School of Veterinary Medicine University of California—Davis Davis California USA
| | - Stanley L. Marks
- Department of Medicine and Epidemiology, School of Veterinary Medicine University of California—Davis Davis California USA
| | - Jamie Sebastian
- William R. Prichard Veterinary Medical Teaching Hospital University of California‐Davis Davis USA
| | - Jennifer McGill
- William R. Prichard Veterinary Medical Teaching Hospital University of California‐Davis Davis USA
| | - Chen Gilor
- Department of Small Animal Clinical Sciences, College of Veterinary Medicine University of Florida Gainesville Florida USA
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Reagan KL, Pires J, Quach N, Gilor C. Evaluation of a machine learning tool to screen for hypoadrenocorticism in dogs presenting to a teaching hospital. J Vet Intern Med 2022; 36:1942-1946. [PMID: 36259689 DOI: 10.1111/jvim.16566] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 09/23/2022] [Indexed: 11/28/2022] Open
Abstract
BACKGROUND Dogs with hypoadrenocorticism (HA) have clinical signs and clinicopathologic abnormalities that can be mistaken as other diseases. In dogs with a differential diagnosis of HA, a machine learning model (MLM) has been validated to discriminate between HA and other diseases. This MLM has not been evaluated as a screening tool for a broader group of dogs. HYPOTHESIS An MLM can accurately screen dogs for HA. ANIMALS Dogs (n = 1025) examined at a veterinary hospital. METHODS Dogs that presented to a tertiary referral hospital that had a CBC and serum chemistry panel were enrolled. A trained MLM was applied to clinicopathologic data and in dogs that were MLM positive for HA, diagnosis was confirmed by measurement of serum cortisol. RESULTS Twelve dogs were MLM positive for HA and had further cortisol testing. Five had HA confirmed (true positive), 4 of which were treated for mineralocorticoid and glucocorticoid deficiency, and 1 was treated for glucocorticoid deficiency alone. Three MLM positive dogs had baseline cortisol ≤2 μg/dL but were euthanized or administered glucocorticoid treatment without confirming the diagnosis with an ACTH-stimulation test (classified as "undetermined"), and in 4, HA was ruled out (false positives). The positive likelihood ratio of the MLM was 145 to 254. All dogs diagnosed with HA by attending clinicians tested positive by the MLM. CONCLUSIONS AND CLINICAL IMPORTANCE This MLM can robustly predict HA status when indiscriminately screening all dogs with blood work. In this group of dogs with a low prevalence of HA, the false positive rates were clinically acceptable.
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Affiliation(s)
- Krystle L Reagan
- Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California-Davis, Davis, California, USA
| | - Jully Pires
- Veterinary Medical Teaching Hospital, School of Veterinary Medicine, University of California-Davis, Davis, California, USA
| | - Nina Quach
- Veterinary Medical Teaching Hospital, School of Veterinary Medicine, University of California-Davis, Davis, California, USA
| | - Chen Gilor
- Department of Small Animal Clinical sciences, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA
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Guzmán Ramos PJ, Bennaim M, Shiel RE, Mooney CT. Diagnosis of canine spontaneous hypoadrenocorticism. Canine Med Genet 2022; 9:6. [PMID: 35505424 PMCID: PMC9066729 DOI: 10.1186/s40575-022-00119-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Accepted: 04/13/2022] [Indexed: 11/10/2022] Open
Abstract
Hypoadrenocorticism is characterized by a reduction in mineralocorticoid and/or glucocorticoid production by the adrenal glands. Several subtypes have been described with different clinical and clinicopathological consequences. Most affected dogs have vague and non-specific signs that precede an eventual life-threatening crisis. This review aims to appraise classification, the available data on epidemiology and the clinical and laboratory features of naturally occurring canine hypoadrenocorticism. Canine hypoadrenocorticism is a relatively uncommon endocrine disease that can present with a wide variety of clinical signs resulting from cortisol or aldosterone deficiency or both. Hypoadrenocorticism should be considered in all dogs with severe illness and typical electrolyte abnormalities but also in those with waxing and waning clinical signs. Multiple clinical and laboratory features are suggestive of the disease and should prompt evaluation of adrenal function. The ACTH stimulation test is the best test for diagnosing hypoadrenocorticism but, in those cases without the typical presentation, evaluation of aldosterone secretory capacity and endogenous ACTH concentrations should be performed to distinguish primary from secondary disease. In this review we discuss the pathophysiology of the disease, the clinical signs and laboratory features that should raise suspicion of hypoadrenocorticism and the performance of the different diagnostic tests.
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Affiliation(s)
- Pedro J Guzmán Ramos
- University College Dublin Veterinary Hospital, University College Dublin, Dublin, Ireland.
| | - Michael Bennaim
- Centre Hospitalier Vétérinaire Anicura Aquivet, Eysines, France
| | - Robert E Shiel
- University College Dublin Veterinary Hospital, University College Dublin, Dublin, Ireland
| | - Carmel T Mooney
- University College Dublin Veterinary Hospital, University College Dublin, Dublin, Ireland
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13
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Ferreira TS, Santana EEC, Jacob Junior AFL, Silva Junior PF, Bastos LS, Silva ALA, Melo SA, Cruz CAM, Aquino VS, Castro LSO, Lima GO, Freire RCS. Diagnostic Classification of Cases of Canine Leishmaniasis Using Machine Learning. SENSORS 2022; 22:s22093128. [PMID: 35590819 PMCID: PMC9105265 DOI: 10.3390/s22093128] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 03/22/2022] [Accepted: 04/13/2022] [Indexed: 02/04/2023]
Abstract
Proposal techniques that reduce financial costs in the diagnosis and treatment of animal diseases are welcome. This work uses some machine learning techniques to classify whether or not cases of canine visceral leishmaniasis are present by physical examinations. For validation of the method, four machine learning models were chosen: K-nearest neighbor, Naïve Bayes, support vector machine and logistic regression models. The tests were performed on three hundred and forty dogs, using eighteen characteristics of the animal and the ELISA (enzyme-linked immunosorbent assay) serological test as validation. Logistic regression achieved the best metrics: Accuracy of 75%, sensitivity of 84%, specificity of 67%, a positive likelihood ratio of 2.53 and a negative likelihood ratio of 0.23, showing a positive relationship in the evaluation between the true positives and rejecting the cases of false negatives.
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Affiliation(s)
- Tiago S. Ferreira
- Graduating Program in Computation Engineering and Systems, State University of Maranhão, São Luís 65690-000, Brazil; (T.S.F.); (E.E.C.S.); (A.F.L.J.J.)
| | - Ewaldo E. C. Santana
- Graduating Program in Computation Engineering and Systems, State University of Maranhão, São Luís 65690-000, Brazil; (T.S.F.); (E.E.C.S.); (A.F.L.J.J.)
| | - Antônio F. L. Jacob Junior
- Graduating Program in Computation Engineering and Systems, State University of Maranhão, São Luís 65690-000, Brazil; (T.S.F.); (E.E.C.S.); (A.F.L.J.J.)
| | - Paulo F. Silva Junior
- Graduating Program in Computation Engineering and Systems, State University of Maranhão, São Luís 65690-000, Brazil; (T.S.F.); (E.E.C.S.); (A.F.L.J.J.)
- Correspondence: ; Tel.: +55-98-98508-6290
| | - Luciana S. Bastos
- Graduating Program in Animal Sciences, State University of Maranhão, São Luís 65690-000, Brazil; (L.S.B.); (A.L.A.S.)
| | - Ana L. A. Silva
- Graduating Program in Animal Sciences, State University of Maranhão, São Luís 65690-000, Brazil; (L.S.B.); (A.L.A.S.)
| | - Solange A. Melo
- Graduating Program in Animal Health Defense, State University of Maranhão, São Luís 65690-000, Brazil;
| | - Carlos A. M. Cruz
- Graduation Program in Electrical Engineering, Federal University of Amazonas, Manaus 69067-005, Brazil; (C.A.M.C.); (V.S.A.); (L.S.O.C.)
| | - Vivianne S. Aquino
- Graduation Program in Electrical Engineering, Federal University of Amazonas, Manaus 69067-005, Brazil; (C.A.M.C.); (V.S.A.); (L.S.O.C.)
| | - Luís S. O. Castro
- Graduation Program in Electrical Engineering, Federal University of Amazonas, Manaus 69067-005, Brazil; (C.A.M.C.); (V.S.A.); (L.S.O.C.)
| | - Guilherme O. Lima
- Graduation Program in Electrical Engineering, Federal University of Maranhão, São Luís 65690-000, Brazil;
| | - Raimundo C. S. Freire
- Graduation Program in Electrical Engineering, Federal University of Campina Grande, Campina Grande 58428-830, Brazil;
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14
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Moya MV, Refsal KR, Langlois DK. Investigation of the urine cortisol to creatinine ratio for the diagnosis of hypoadrenocorticism in dogs. J Am Vet Med Assoc 2022; 260:1041-1047. [PMID: 35417417 DOI: 10.2460/javma.21.12.0538] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
OBJECTIVE To evaluate the urine cortisol-to-creatinine ratio (UCCR) for the diagnosis of hypoadrenocorticism (HA) in dogs and to determine whether the method of urine cortisol measurement affects results. ANIMALS 41 dogs with naturally occurring HA and 107 dogs with nonadrenal illness. PROCEDURES Urine samples were prospectively collected from dogs undergoing testing for HA. Urine cortisol concentrations were measured at a veterinary diagnostic laboratory using either a radioimmunoassay (RIA) or a chemiluminescent immunoassay (CLIA). Receiver operating characteristic (ROC) curves were constructed to assess UCCR performance by both methods for HA diagnosis. Sensitivities, specificities, accuracies, and predictive values were calculated for various cutpoints. RESULTS The areas under the ROC curves for UCCR diagnosis of HA were 0.99 (95% CI, 0.98 to 1.00) and 1.00 (95% CI, 1.00 to 1.00) when urine cortisol was determined by RIA and CLIA, respectively. An RIA UCCR of ≤ 2 was 97.2% sensitive, 93.6% specific, and 94.7% accurate for HA diagnosis, whereas a CLIA UCCR of ≤ 10 was 100% sensitive, specific, and accurate. An RIA UCCR > 4 and a CLIA UCCR of > 10 had negative predictive values of 100%. CLINICAL RELEVANCE The UCCR was an accurate diagnostic test for HA in this study population, although equivocal results are possible. Case characteristics, method of cortisol measurement, and laboratory-specific cutpoints must be considered when interpreting results.
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Affiliation(s)
- Melissa V Moya
- 1Department of Small Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI
| | - Kent R Refsal
- 2Veterinary Diagnostic Laboratory, College of Veterinary Medicine, Michigan State University, East Lansing, MI
| | - Daniel K Langlois
- 1Department of Small Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI
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15
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Metabolomic Abnormalities in Serum from Untreated and Treated Dogs with Hyper- and Hypoadrenocorticism. Metabolites 2022; 12:metabo12040339. [PMID: 35448526 PMCID: PMC9028761 DOI: 10.3390/metabo12040339] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 04/05/2022] [Accepted: 04/06/2022] [Indexed: 02/04/2023] Open
Abstract
The adrenal glands play a major role in metabolic processes, and both excess and insufficient serum cortisol concentrations can lead to serious metabolic consequences. Hyper- and hypoadrenocorticism represent a diagnostic and therapeutic challenge. Serum samples from dogs with untreated hyperadrenocorticism (n = 27), hyperadrenocorticism undergoing treatment (n = 28), as well as with untreated (n = 35) and treated hypoadrenocorticism (n = 23) were analyzed and compared to apparently healthy dogs (n = 40). A validated targeted proton nuclear magnetic resonance (1H NMR) platform was used to quantify 123 parameters. Principal component analysis separated the untreated endocrinopathies. The serum samples of dogs with untreated endocrinopathies showed various metabolic abnormalities with often contrasting results particularly in serum concentrations of fatty acids, and high- and low-density lipoproteins and their constituents, which were predominantly increased in hyperadrenocorticism and decreased in hypoadrenocorticism, while amino acid concentrations changed in various directions. Many observed serum metabolic abnormalities tended to normalize with medical treatment, but normalization was incomplete when compared to levels in apparently healthy dogs. Application of machine learning models based on the metabolomics data showed good classification, with misclassifications primarily observed in treated groups. Characterization of metabolic changes enhances our understanding of these endocrinopathies. Further assessment of the recognized incomplete reversal of metabolic alterations during medical treatment may improve disease management.
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16
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Pijnacker T, Bartels R, van Leeuwen M, Teske E. Identification of parameters and formulation of a statistical and machine learning model to identify Babesia canis infections in dogs using available ADVIA hematology analyzer data. Parasit Vectors 2022; 15:41. [PMID: 35093154 PMCID: PMC8801090 DOI: 10.1186/s13071-022-05163-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 01/12/2022] [Indexed: 11/11/2022] Open
Abstract
BACKGROUND Canine babesiosis is an important tick-borne disease in endemic regions. One of the relevant subspecies in Europe is Babesia canis, and it can cause severe clinical signs such as hemolytic anemia. Apart from acute clinical symptoms dogs can also have a more chronic disease development or be asymptomatic carriers. Our objective was to identify readily available ADVIA hematology analyzer parameters suggestive of B. canis parasitemia in dogs and to formulate a predictive model. METHODS A historical dataset of complete blood count data from an ADVIA hematology system with blood smear or PCR confirmed parasitemia cases was used to obtain a model by conventional statistics (CS) methods and machine learning (ML) using logistical regression and tree methods. RESULTS Both methods identified that important parameters were platelet count, mean platelet volume and percentage large unstained cells. We were able to formulate a CS model and ML model to screen for Babesia parasitemia in dogs with a sensitivity of 84.6% (CS) and 100% (ML), a specificity of 97.7% (CS) and 95.7% (ML) and a positive likelihood ratio (LR+) of 36.78 (CS) and 23.2 (ML). CONCLUSIONS This study introduces two methods of screening for B. canis parasitemia on readily available data from ADVIA hematology systems. The algorithms can easily be introduced in laboratories that use these analyzers. When the algorithm marks a sample as 'suggestive' for Babesia parasitemia, the sample is approximately 37 times more likely to show Babesia merozoites on blood smear analysis.
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Affiliation(s)
- Tera Pijnacker
- Department of Clinical Sciences, Utrecht University, Utrecht, The Netherlands
| | - Richard Bartels
- Digital Health, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Martin van Leeuwen
- Department of Clinical Sciences, Utrecht University, Utrecht, The Netherlands
| | - Erik Teske
- Department of Clinical Sciences, Utrecht University, Utrecht, The Netherlands
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17
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Ouyang ZB, Hodgson JL, Robson E, Havas K, Stone E, Poljak Z, Bernardo TM. Day-1 Competencies for Veterinarians Specific to Health Informatics. Front Vet Sci 2021; 8:651238. [PMID: 34179157 PMCID: PMC8231916 DOI: 10.3389/fvets.2021.651238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 04/21/2021] [Indexed: 11/13/2022] Open
Abstract
In 2015, the American Association of Veterinary Medical Colleges (AAVMC) developed the Competency-Based Veterinary Education (CBVE) framework to prepare practice-ready veterinarians through competency-based education, which is an outcomes-based approach to equipping students with the skills, knowledge, attitudes, values, and abilities to do their jobs. With increasing use of health informatics (HI: the use of information technology to deliver healthcare) by veterinarians, competencies in HI need to be developed. To reach consensus on a HI competency framework in this study, the Competency Framework Development (CFD) process was conducted using an online adaptation of Developing-A-Curriculum, an established methodology in veterinary medicine for reaching consensus among experts. The objectives of this study were to (1) create an HI competency framework for new veterinarians; (2) group the competency statements into common themes; (3) map the HI competency statements to the AAVMC competencies as illustrative sub-competencies; (4) provide insight into specific technologies that are currently relevant to new veterinary graduates; and (5) measure panelist satisfaction with the CFD process. The primary emphasis of the final HI competency framework was that veterinarians must be able to assess, select, and implement technology to optimize the client-patient experience, delivery of healthcare, and work-life balance for the veterinary team. Veterinarians must also continue their own education regarding technology by engaging relevant experts and opinion leaders.
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Affiliation(s)
- Zenhwa Ben Ouyang
- Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, ON, Canada
| | - Jennifer Louise Hodgson
- Department of Population Health Sciences, Virginia-Maryland College of Veterinary Medicine, Blacksburg, VA, United States
| | | | | | - Elizabeth Stone
- Department of Clinical Studies, University of Guelph, Guelph, ON, Canada
| | - Zvonimir Poljak
- Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, ON, Canada
| | - Theresa Marie Bernardo
- Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, ON, Canada
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18
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Machine-learning based prediction of Cushing's syndrome in dogs attending UK primary-care veterinary practice. Sci Rep 2021; 11:9035. [PMID: 33907241 PMCID: PMC8079424 DOI: 10.1038/s41598-021-88440-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 04/08/2021] [Indexed: 11/29/2022] Open
Abstract
Cushing’s syndrome is an endocrine disease in dogs that negatively impacts upon the quality-of-life of affected animals. Cushing’s syndrome can be a challenging diagnosis to confirm, therefore new methods to aid diagnosis are warranted. Four machine-learning algorithms were applied to predict a future diagnosis of Cushing's syndrome, using structured clinical data from the VetCompass programme in the UK. Dogs suspected of having Cushing's syndrome were included in the analysis and classified based on their final reported diagnosis within their clinical records. Demographic and clinical features available at the point of first suspicion by the attending veterinarian were included within the models. The machine-learning methods were able to classify the recorded Cushing’s syndrome diagnoses, with good predictive performance. The LASSO penalised regression model indicated the best overall performance when applied to the test set with an AUROC = 0.85 (95% CI 0.80–0.89), sensitivity = 0.71, specificity = 0.82, PPV = 0.75 and NPV = 0.78. The findings of our study indicate that machine-learning methods could predict the future diagnosis of a practicing veterinarian. New approaches using these methods could support clinical decision-making and contribute to improved diagnosis of Cushing’s syndrome in dogs.
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19
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Schofield I, Woolhead V, Johnson A, Brodbelt DC, Church DB, O'Neill DG. Hypoadrenocorticism in dogs under UK primary veterinary care: frequency, clinical approaches and risk factors. J Small Anim Pract 2021; 62:343-350. [PMID: 33555046 PMCID: PMC8248152 DOI: 10.1111/jsap.13285] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 11/09/2020] [Accepted: 11/26/2020] [Indexed: 01/06/2023]
Abstract
Objectives To estimate the frequency, clinical approaches and risk factors of hypoadrenocorticism in dogs under UK primary veterinary care. Materials and Methods Dogs diagnosed with hypoadrenocorticism were identified from the UK VetCompass™ programme by searching anonymised electronic patient records. Pre‐existing and newly diagnosed cases of disease during 2016 were included. Cases were further sub‐categorised as having a laboratory‐confirmed or presumed diagnosis of hypoadrenocorticism based on the information recorded in the electronic patient records. Descriptive data were manually extracted. Multivariable logistic regression methods were used to identify demographic risk factors. Results There were 177 hypoadrenocorticism cases identified from 905,543 dogs in 2016; 72 laboratory‐confirmed and 105 presumed. The 1‐year period prevalence for hypoadrenocorticism in all dogs was 0.06% (95% confidence interval: 0.05‐0.07%). The most common presenting clinical signs in laboratory‐confirmed dogs were lethargy (51/66, 77.3%), anorexia (48/66, 66.7%) and vomiting (48/66, 66.7%). Hyperkalaemia was reported in 47 of 53 (88.7%), hyponatraemia in 46 of 53 (86.8%). Median sodium: potassium ratio was 19.00 (interquartile range: 16.20‐20.60). Breed, age, neuter status and insurance status were associated with a laboratory‐confirmed diagnosis of hypoadrenocorticism. No sex association with hypoadrenocorticism was observed in the multivariable model. The standard poodle had 51.38 times the odds (95% CI: 14.49‐182.18) of hypoadrenocorticism compared with crossbreeds. The labradoodle and West Highland white terrier also had increased odds. Clinical Significance This is the first epidemiological study to report on hypoadrenocorticism in dogs within the UK primary‐care population. These results provide benchmark data of current veterinary activity relating to hypoadrenocorticism in primary‐care practices.
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Affiliation(s)
- I Schofield
- Pathobiology and Population Sciences, The Royal Veterinary College, Hawkshead Lane, North Mymms, Hatfield, Herts, AL9 7TA, UK
| | - V Woolhead
- Eastcott Referrals, Edison Park, Dorcan Way, Swindon, SN3 3RB, UK
| | - A Johnson
- Pathobiology and Population Sciences, The Royal Veterinary College, Hawkshead Lane, North Mymms, Hatfield, Herts, AL9 7TA, UK
| | - D C Brodbelt
- Pathobiology and Population Sciences, The Royal Veterinary College, Hawkshead Lane, North Mymms, Hatfield, Herts, AL9 7TA, UK
| | - D B Church
- Clinical Science and Services, The Royal Veterinary College, Hawkshead Lane, North Mymms, Hatfield, Herts, AL9 7TA, UK
| | - D G O'Neill
- Pathobiology and Population Sciences, The Royal Veterinary College, Hawkshead Lane, North Mymms, Hatfield, Herts, AL9 7TA, UK
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20
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Yao H, Zhang N, Zhang R, Duan M, Xie T, Pan J, Peng E, Huang J, Zhang Y, Xu X, Xu H, Zhou F, Wang G. Severity Detection for the Coronavirus Disease 2019 (COVID-19) Patients Using a Machine Learning Model Based on the Blood and Urine Tests. Front Cell Dev Biol 2020; 8:683. [PMID: 32850809 PMCID: PMC7411005 DOI: 10.3389/fcell.2020.00683] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 07/06/2020] [Indexed: 01/08/2023] Open
Abstract
The recent outbreak of the coronavirus disease-2019 (COVID-19) caused serious challenges to the human society in China and across the world. COVID-19 induced pneumonia in human hosts and carried a highly inter-person contagiousness. The COVID-19 patients may carry severe symptoms, and some of them may even die of major organ failures. This study utilized the machine learning algorithms to build the COVID-19 severeness detection model. Support vector machine (SVM) demonstrated a promising detection accuracy after 32 features were detected to be significantly associated with the COVID-19 severeness. These 32 features were further screened for inter-feature redundancies. The final SVM model was trained using 28 features and achieved the overall accuracy 0.8148. This work may facilitate the risk estimation of whether the COVID-19 patients would develop the severe symptoms. The 28 COVID-19 severeness associated biomarkers may also be investigated for their underlining mechanisms how they were involved in the COVID-19 infections.
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Affiliation(s)
- Haochen Yao
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
| | - Nan Zhang
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Ruochi Zhang
- BioKnow Health Informatics Lab, College of Software, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China
| | - Meiyu Duan
- BioKnow Health Informatics Lab, College of Software, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China
| | - Tianqi Xie
- School of Computing and Information, University of Pittsburgh, Pittsburgh, PA, United States
| | - Jiahui Pan
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
| | - Ejun Peng
- Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Juanjuan Huang
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
| | - Yingli Zhang
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Xiaoming Xu
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Hong Xu
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Fengfeng Zhou
- BioKnow Health Informatics Lab, College of Software, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China
| | - Guoqing Wang
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
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21
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Yao H, Zhang N, Zhang R, Duan M, Xie T, Pan J, Peng E, Huang J, Zhang Y, Xu X, Xu H, Zhou F, Wang G. Severity Detection for the Coronavirus Disease 2019 (COVID-19) Patients Using a Machine Learning Model Based on the Blood and Urine Tests. Front Cell Dev Biol 2020. [PMID: 32850809 DOI: 10.2139/ssrn.3564426] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2023] Open
Abstract
The recent outbreak of the coronavirus disease-2019 (COVID-19) caused serious challenges to the human society in China and across the world. COVID-19 induced pneumonia in human hosts and carried a highly inter-person contagiousness. The COVID-19 patients may carry severe symptoms, and some of them may even die of major organ failures. This study utilized the machine learning algorithms to build the COVID-19 severeness detection model. Support vector machine (SVM) demonstrated a promising detection accuracy after 32 features were detected to be significantly associated with the COVID-19 severeness. These 32 features were further screened for inter-feature redundancies. The final SVM model was trained using 28 features and achieved the overall accuracy 0.8148. This work may facilitate the risk estimation of whether the COVID-19 patients would develop the severe symptoms. The 28 COVID-19 severeness associated biomarkers may also be investigated for their underlining mechanisms how they were involved in the COVID-19 infections.
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Affiliation(s)
- Haochen Yao
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
| | - Nan Zhang
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Ruochi Zhang
- BioKnow Health Informatics Lab, College of Software, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China
| | - Meiyu Duan
- BioKnow Health Informatics Lab, College of Software, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China
| | - Tianqi Xie
- School of Computing and Information, University of Pittsburgh, Pittsburgh, PA, United States
| | - Jiahui Pan
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
| | - Ejun Peng
- Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Juanjuan Huang
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
| | - Yingli Zhang
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Xiaoming Xu
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Hong Xu
- The First Hospital of Jilin University, Jilin University, Changchun, China
| | - Fengfeng Zhou
- BioKnow Health Informatics Lab, College of Software, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China
| | - Guoqing Wang
- Department of Pathogenobiology, The Key Laboratory of Zoonosis, Chinese Ministry of Education, College of Basic Medical Science, Jilin University, Changchun, China
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