Effect of rhizospheric inoculation of isolated arsenic (As) tolerant strains on growth, As-uptake and bacterial communities in association with Adiantum capillus-veneris

Enhancing the phytoextraction capacity of chromium-contaminated soil by co-addition of garbage enzymes and microelectrolytic iron-carbon fillers

Most improved strategies for phytoextraction do not achieve a synergistic enhancement of chromium (Cr) accumulation capacity and biomass. This study investigated the impacts of co-addition of garbage enzyme (GE) and microelectrolytic iron-carbon filler (MF) on soil physicochemical properties, as well as form and uptake of Cr during aging and phytoextraction process. The response of rhizosphere microbial community to co-addition and its role in enhancing the remediation performance of ryegrass was further analyzed. Co-addition of GE and MF during the 12-day aging process resulted in an increase of nutrients, a shift from an oxidising to a reducing soil environment, a decrease of Cr(VI) content, and an enhancement of soil microbial community diversity and richness, creating a suitable environment for subsequent phytoextraction. During the 40-day phytoextraction process, co-addition played a crucial role in facilitating the establishment of a complex, efficient and interdependent ecological network among soil microorganisms and contributed to the evolution of microbial community composition and functional pathways. An increase in the relative abundance of Trichococcus, Azospirillum and g_norank_f_JG30-KF-CM45 elevated soil nutrient levels, while a decrease in the relative abundance of TM7a and Brucella reduced pathogen harbouring. Meanwhile, co-addition increased the relative abundance of Bacillus, Arthrobacter and Exiguobacterium, attenuated Cr phytotoxicity and improved soil biochemical activity. These markedly diminished oxidative damage and improved ryegrass growth by reducing malondialdehyde accumulation. In addition, regular additions of GE and the increase in relative abundance of norank_fnorank_o_Microtrichales led to rhizosphere acidification, which inhibited short-term Cr immobilization and contributed to a notable increase in phytoextraction efficiency. This study presents a strategy to enhance phytoremediation efficiency and soil quality during phytoextraction of Cr-contaminated soils.

Microbial consortia-mediated arsenic bioremediation in agricultural soils: Current status, challenges, and solutions

Arsenic poisoning in agricultural soil is caused by both natural and man-made processes, and it poses a major risk to crop production and human health. Soil quality, agricultural production, runoff, ingestion, leaching, and absorption by plants are all influenced by these processes. Microbial consortia have become a feasible bioremediation technique in response to the urgent need for appropriate remediation solutions. These diverse microbial populations collaborate to combat arsenic poisoning in soil by facilitating mechanisms including oxidation-reduction, methylation-demethylation, volatilization, immobilization, and arsenic mobilization. The current state, problems, and remedies for employing microbial consortia in arsenic bioremediation in agricultural soils are examined in this review. Among the elements affecting their success include diversity, activity, community organization, and environmental conditions. Also, we emphasize the sensitivity and accuracy limits of existing assessment techniques. While earlier reviews have addressed a variety of arsenic remediation options, this study stands out by concentrating on microbial consortia as a viable strategy for arsenic removal and presents performance evaluation and technical problems. This work gives vital insights for tackling the major issue of arsenic pollution in agricultural soils by explaining the potential methods and components involved in microbial consortium-mediated arsenic bioremediation.

Arsenic stress management through arsenite and arsenate-tolerant growth-promoting bacteria in rice

Arsenic (As) contamination is a major problem affecting soil and groundwater in India, harming agricultural crops and human health. Plant growth-promoting rhizobacteria (PGPR) have emerged as promising agents for reducing As toxicity in plants. This study aimed to isolate and characterize As-tolerant PGPR from rice field soils with varying As levels in five districts of West Bengal, India. A total of 663 bacterial isolates were obtained from the different soil samples, and 10 bacterial strains were selected based on their arsenite (As-III) and arsenate (As-V) tolerant ability and multiple PGP traits, including phosphate solubilization, production of siderophore, indole acetic acid, biofilm formation, alginate, and exopolysaccharide. These isolates were identified by 16S rRNA gene sequencing analysis as Staphylococcus sp. (4), Niallia sp. (2), Priestia sp. (1), Bacillus sp. (1), Pseudomonas sp. (1), and Citricoccus sp. (1). Among the selected bacterial strains, Priestia flexa NBRI4As1 and Pseudomonas chengduensis NBRI12As1 demonstrated significant improvement in rice growth by alleviating arsenic stress under greenhouse conditions. Both strains were also able to modulate photosynthetic pigments, soluble sugar content, proline concentration, and defense enzyme activity. Reduction in As-V accumulation inoculated with NBRI4As1 was recorded highest by 53.02% and 31.48%, while As-III by NBRI12As1 38.84% and 35.98% in the roots and shoots of rice plants, respectively. Overall, this study can lead to developing efficient As-tolerant bacterial strains-based bioinoculant application packages for arsenic stress management in rice.

Plant growth-promoting rhizobacteria: A good companion for heavy metal phytoremediation

Phytoremediation is an environment-friendly approach regarded as a potential candidate for remediating heavy metal (HM)-contaminated soils. However, the low efficacy of phytoremediation is a major limitation that hampers its large-scale application. Therefore, developing strategies to enhance phytoremediation efficacy for contaminated soils is crucial. Plant growth-promoting rhizobacteria (PGPR) considerably contribute to phytoremediation intensification. To improve the efficiency of plant-microbe symbiosis for remediation, the mechanisms underlying PGPR-stimulated HM accumulation and tolerance in plants should be comprehensively understood. This review focuses on hyperaccumulators, PGPR, and the mechanisms by which PGPR enhance phytoremediation from four aspects: providing nutrients to plants, secreting plant hormones and specific enzymes, inducing systemic resistance, and altering the bioavailability of HMs in soils. It also provides a theoretical and technical basis for future research on PGPR synergism in promoting the phytoextraction efficiency in HM-contaminated soils.

Bacterial assisted phytoremediation of heavy metals and organic pollutants by Cannabis sativa as accumulator plants growing on distillery sludge for ecorestoration of polluted site

The aim of the study is to explore the potential rhizospheric bacterial communities associated with Cannabis sativa L. (Cannabis); growing on the complex pollutant-rich distillery sludge. Seven bacterial species were isolated, among which four potential bacterial species were characterized based on the 16s rRNA sequencing from the rhizosphere sludge of C. sativa; they are Bacillus thuringiensis (MW887525), Bacillus cereus (MW887524), Achromobacter denitrificans (MW886333), Bacillus subtilis (MW886231). The isolated bacteria showed PGPR attributes and potential for ligninolytic enzyme activity. Further, to correlate these bacteria with organic pollutants of sludge, the GC-MS analysis of fresh disposed distillery sludge and after growth of 30 and 60 days C. sativa was also analysed, which showed the conversion and disappearance of compounds by the activity of rhizospheric bacterial communities. Additionally, C. sativa showed a higher metal accumulation pattern of Fe (801.81 ± 0.123)> Cu (275.086 ± 0.069)> Zn (162.15 ± 0.085)> Mn (63.92 ± 0.093)> Pb (28.619 ± 0.192)> Ni (5.02 ± 0.078)> Cd (2.53 ± 0.085)> Cr (1.87 ± 0.079) mg kg ^-1 in their shoot, root followed by leaf. The plant also showed BCF >1 and TF > 1 for most of the metals. Thus, this showed the phytoextraction properties of C. sativa from distillery sludge polluted sites. The findings of this study will enable to understand the functional role of rhizospheric bacterial community for the detoxification and degradation of complex organometallic waste, and will thus aid in the development of adequate phytoremediation techniques for the eco-restoration of polluted industrial sites for sustainable development.

Non-rhizobial nodule endophytes improve nodulation, change root exudation pattern and promote the growth of lentil, for prospective application in fallow soil

Non-rhizobial endophytes (NREs) are active colonizers inhabiting the root nodules. Though their active role in the lentil agroecosystem is not well defined, here we observed that these NREs might promote the growth of lentils, modulate rhizospheric community structure and could be used as promising organisms for optimal use of rice fallow soil. NREs from root nodules of lentils were isolated and examined for plant growth-promoting traits, exopolysaccharide (EPS) and biofilm production, root metabolites, and the presence of nifH and nifK elements. The greenhouse experiment with the chosen NREs, i.e., Serratia plymuthica 33GS and Serratia sp. R6 significantly increased the germination rate, vigour index, development of nodules (in non-sterile soil) and fresh weight of nodules (33GS 94%, R6 61% growth) and length of the shoot (33GS 86%, R6 51.16%) as well as chlorophyll levels when compared to the uninoculated control. Scanning Electron Microscopy (SEM) revealed that both isolates could successfully colonize the roots and elicit root hair growth. The inoculation of the NREs resulted in specific changes in root exudation patterns. The plants with 33GS and R6 treatment significantly stimulated the exudation of triterpenes, fatty acids, and their methyl esters in comparison to the uninoculated plants, altering the rhizospheric microbial community structure. Proteobacteria dominated the rhizospheric microbiota in all the treatments. Treatment with 33GS or R6 also enhanced the relative abundance of other favourable microbes, including Rhizobium, Mesorhizobium, and Bradyrhizobium. The correlation network analysis of relative abundances resulted in numerous bacterial taxa, which were in cooperation with each other, having a possible role in plant growth promotion. The results indicate the significant role of NREs as plant growth promoters, which also includes their role in root exudation patterns, enhancement of soil nutrient status and modulation of rhizospheric microbiota, suggesting their prospects in sustainable, and bio-based agriculture.

Involvement of exogenous arsenic-reducing bacteria in root surface biofilm formation promoted phytoextraction of arsenic

Root surface biofilm (RSB) is the last window for pollutants entering plant roots and thus plays a critical role in the phytoextraction of pollutants. Exogenous arsenic-reducing bacteria (EARB) have been adopted to enhance the phytoextraction of arsenic (As). However, whether EARB would be involved in RSB formation together with indigenous bacteria and the role of EARB involvement in As phytoextraction are still unknown. Herein, two EARB strains and two phytoextractors (wheat and maize) were selected to investigate the involvement of EARB in RSB formation and its role in As phytoextraction. Results showed that EARB successfully participated in RSB formation together with indigenous bacteria, attributing to their strong chemotaxis and biofilm formation abilities induced by root exudates. The involvement of EARB in RSB formation significantly enhanced As accumulation in plant roots, since more arsenite (As(III)) caused by arsenate (As(V)) reduction in RSB was absorbed by roots. Its underlying mechanism was further elucidated. EARB involvement increased phylum Proteobacteria to produce more siderophores in RSB. Siderophores then improved photosynthesis by increasing catalase and peroxidase activities and decreasing the malondialdehyde of plants. These actions further raised the shoot fresh weight to enhance As accumulation in plant roots. Moreover, mesophyll cell in wheat has a stronger As(V) reduction ability than that in maize, resulting in opposite distribution patterns of As(III) and As(V) in wheat and maize shoots. This study provides a new understanding of phytoextraction enhanced by exogenous bacteria and fills the gap in the role of EARB in As phytoextraction from the perspective of the RSB microregion.

Optimistic contributions of plant growth-promoting bacteria for sustainable agriculture and climate stress alleviation

Global climate change is the major cause of abiotic and biotic stresses that have adverse effects on agricultural productivity to an irreversible level, thus threatening to limit gains in production and imperil sustainable agriculture. These climate change-induced abiotic stresses, especially saline, drought, extreme temperature, and so on affect plant morphological, physiological, biochemical, and metabolic characteristics through various pathways and mechanisms, ultimately hindering plant growth, development, and productivity. However, overuse and other inappropriate uses of agrochemicals are not conducive to the protection of natural resources and the environment, thus hampering sustainable agricultural development. With the vigorous development of modern agriculture, the application of plant growth-promoting bacteria (PGPB) can better ensure sustainable agriculture, due to their ability to improve soil properties and confer stress tolerance in plants. This review deciphered the underlying mechanisms of PGPB involved in enhancing plant stress tolerance and performance under various abiotic and biotic stresses. Moreover, the recent advancements in PGPB inoculation techniques, the commercialization of PGPB-based technology and the current applications of PGPB in sustainable agriculture were extensively discussed. Finally, an outlook on the future directions of microbe-aided agriculture was pointed out. Providing insights into plant-PGPB interactions under biotic and abiotic stresses and offering evidence and strategies for PGPB better commercialization and implementation can inspire the development of innovative solutions exploiting PGPB under climatological conditions.

Treatment with atypical rhizobia, Pararhizobium giardinii and Ochrobactrum sp. modulate the rhizospheric bacterial community, and enhances Lens culinaris growth in fallow-soil

Diazotrophic nodule isolates are acknowledged promoters of plant growth and rhizospheric community. Consequently, in the lentil agroecosystem, inoculation of atypical rhizobial isolates could be a viable alternative to chemical fertilizers for fallow land usage optimization. The aim of this study is to evaluate and select the rhizobial isolates of lentil nodules with plant-growth-promoting (PGP) attributes and to elucidate their application in rice-fallow soil for determining the growth of lentils and its impact on the rhizospheric bacterial community. Lentil's nodule isolates were identified and screened for their PGP attributes, biofilm, exopolysaccharide (EPS) formation, and early plant growth promotion. The pot experiment with the selected atypical rhizobial isolates Pararhizobium giardinii (P1) and Ochrobactrum sp. (42S) significantly enhanced germination, vigour index, nodule formation (P1 60%, 42S 42% increase), nodule fresh weight, shoot length (65% P1 & 35% 42S), and chlorophyll content as compared to the uninoculated control treatment. The genes for nitrogen fixation nifH and nifK were detected in both isolates. Scanning Electron Microscopy (SEM) revealed successful root and nodule colonization by both isolates, while Transmission Electron Microscopy (TEM) displayed nitrogen-fixing zones within root nodules. Proteobacteria predominated in the lentil rhizosphere of all the treatments. Whereas, application of either P1 or 42S increased Rhizobium, Mesorhizobium, and Bradyrhizobium genra, thus positively modulating rhizospheric community structure. The correlation network analysis revealed an abundance of some interdependent bacterial genera with a possible role in overall plant growth. Functional genes for siderophore biosynthesis and ABC transporter were positively modulated by application of either P1 or 42S. This study showed the significant effect of P. giardinii P1 and Ochrobactrum sp. 42S of L. culinaris on lentil growth, improving fallowsoil health for optimum usage, and modulated rhizospheric community structure which strongly manifest prospects of low-cost, eco-friendly and sustainable biofertilizers.

Modification of Rhizosphere Microbial Communities: A Possible Mechanism of Plant Growth Promoting Rhizobacteria Enhancing Plant Growth and Fitness

Plant beneficial bacteria, defined as plant growth-promoting rhizobacteria (PGPR), play a crucial role in plants' growth, stress tolerance and disease prevention. In association with the rhizosphere of plants, PGPR facilitate plant growth and development either directly or indirectly through multiple mechanisms, including increasing available mineral nutrients, moderating phytohormone levels and acting as biocontrol agents of phytopathogens. It is generally accepted that the effectiveness of PGPR inoculants is associated with their ability to colonize, survive and persist, as well as the complex network of interactions in the rhizosphere. Despite the promising plant growth promotion results commonly reported and mostly attributed to phytohormones or other organic compounds produced by PGPR inoculants, little information is available on the potential mechanisms underlying such positive effects via modifying rhizosphere microbial community and soil functionality. In this review, we overviewed the effects of PGPR inoculants on rhizosphere microbial ecology and soil function, hypothesizing that PGPR may indirectly promote plant growth and health via modifying the composition and functioning of rhizosphere microbial community, and highlighting the further directions for investigating the role of PGPR in rhizosphere from an ecological perspective.

Arsenic acquisition, toxicity and tolerance in plants - From physiology to remediation: A review

Globally, environmental contamination by potentially noxious metalloids like arsenic is becoming a critical concern to the living organisms. Arsenic is a non-essential metalloid for plants and can be acclimatised in plants to toxic levels. Arsenic acquisition by plants poses serious health risks in human due to its entry in the food chain. High arsenic regimes disturb plant water relations, promote the generation of reactive oxygen species (ROS) and induce oxidative outburst in plants. This review evidences a conceivable tie-up among arsenic levels, speciation, its availability, uptake, acquisition, transport, phytotoxicity and arsenic detoxification in plants. The role of different antioxidant enzymes to confer plant tolerance towards the enhanced arsenic distress has also been summed up. Additionally, the mechanisms involved in the modulation of different genes coupled with arsenic tolerance have been thoroughly discussed. This review is intended to present an overview to rationalise the contemporary progressions on the recent advances in phytoremediation approaches to overcome ecosystem contamination by arsenic.

Targeting redox metabolism of the maize-Azospirillum brasilense interaction exposed to arsenic-affected groundwater

Arsenic in groundwater constitutes an agronomic problem due to its potential accumulation in the food chain. Among the agro-sustainable tools to reduce metal(oid)s toxicity, the use of plant growth-promoting bacteria (PGPB) becomes important. For that, and based on previous results in which significant differences of As translocation were observed when inoculating maize plants with Az39 or CD Azospirillum strains, we decided to decipher the redox metabolism changes and the antioxidant system response of maize plants inoculated when exposed to a realistic arsenate (As^V ) dose. Results showed that As^V caused morphological changes in the root exodermis. Photosynthetic pigments decreased only in CD inoculated plants, while oxidative stress evidence was detected throughout the plant, regardless of the assayed strain. The antioxidant response was strain-differential since only CD inoculated plants showed an increase in superoxide dismutase, glutathione S-transferase (GST), and glutathione reductase (GR) activities while other enzymes showed the same behavior irrespective of the inoculated strain. Gene expression assays reported that only GST23 transcript level was upregulated by arsenate, regardless of the inoculated strain. As^V diminished the glutathione (GSH) content of roots inoculated with the Az39 strain, and CD inoculated plants showed a decrease of oxidized GSH (GSSG) levels. We suggest a model in which the antioxidant response of the maize-diazotrophs system is modulated by the strain and that GSH plays a central role acting mainly as a substrate for GST. These findings generate knowledge for a suitable PGPB selection, and its scaling to an effective bioinoculant formulation for maize crops exposed to adverse environmental conditions.

Application of sulphate and cytokinin in assisted arsenic phytoextraction by industrial Cannabis sativa L

Phytoextraction is currently investigated to effectively remediate soil contaminated by metals and provide highly competitive biomass for energy production. This research aimed to increase arsenic (As) removal from contaminated soil using industrial Cannabis sativa L., a suitable energy crop for biofuel production. Assisted phytoextraction experiments were conducted on a microcosm scale to explore the ability of two friendly treatments, sodium sulphate (SO₄) and exogenous cytokinin (CK), in increasing As phytoextraction efficiency. The results showed that the treatments significantly increased As phytoextraction. Cytokinin was the most effective agent for effectively increasing translocation and the amount of As in aerial parts of C. sativa. In fact, the concentration of As in the shoots of CK-treated plants increased by 172% and 44% compared to untreated and SO₄-treated plants, respectively. However, the increased As amount accumulated in C. sativa tissues due to the two treatments negatively affected plant growth. Arsenic toxicity caused a significant decrease in aerial C. sativa biomass treated with CK and SO₄ of about 32.7% and 29.8% compared to untreated plants, respectively. However, for our research purposes, biomass reduction has been counterbalanced by an increase in As phytoextraction, such as to consider C. sativa and CK an effective combination for the remediation of As-contaminated soils. Considering that C. sativa has the suitable characteristics to provide valuable resources for bioenergy production, our work can help improve the implementation of a sustainable management model for As contaminated areas, such as phytoremediation coupled with bioenergy generation.

Role of Two Plant Growth-Promoting Bacteria in Remediating Cadmium-Contaminated Soil Combined with Miscanthus floridulus (Lab.)

Miscanthus spp. are energy plants and excellent candidates for phytoremediation approaches of metal(loid)s-contaminated soils, especially when combined with plant growth-promoting bacteria. Forty-one bacterial strains were isolated from the rhizosphere soils and roots tissue of five dominant plants (Artemisia argyi Levl., Gladiolus gandavensis Vaniot Houtt, Boehmeria nivea L., Veronica didyma Tenore, and Miscanthus floridulus Lab.) colonizing a cadmium (Cd)-contaminated mining area (Huayuan, Hunan, China). We subsequently tested their plant growth-promoting (PGP) traits (e.g., production of indole-3-acetic acid, siderophore, and 1-aminocyclopropane-1-carboxylate deaminase) and Cd tolerance. Among bacteria, two strains, Klebsiella michiganensis TS8 and Lelliottia jeotgali MR2, presented higher Cd tolerance and showed the best results regarding in vitro growth-promoting traits. In the subsequent pot experiments using soil spiked with 10 mg Cd·kg⁻¹, we investigated the effects of TS8 and MR2 strains on soil Cd phytoremediation when combined with M. floridulus (Lab.). After sixty days of planting M. floridulus (Lab.), we found that TS8 increased plant height by 39.9%, dry weight of leaves by 99.1%, and the total Cd in the rhizosphere soil was reduced by 49.2%. Although MR2 had no significant effects on the efficiency of phytoremediation, it significantly enhanced the Cd translocation from the root to the aboveground tissues (translocation factor > 1). The combination of K. michiganensis TS8 and M. floridulus (Lab.) may be an effective method to remediate Cd-contaminated soils, while the inoculation of L. jeotgali MR2 may be used to enhance the phytoextraction potential of M. floridulus.