Hydrodynamic modeling of a coastal lagoon: The Cabras lagoon in Sardinia, Italy

Mediterranean Coastal Lagoons Review: Sites to Visit before Disappearance

Coastal lagoons are an established priority habitat in the European environment because of the biological communities that inhabit them. Their origin is related to the transport of sediments from a nearby river or the movement of sands by the marine currents that produce the closure of a gulf. Therefore, they are recent geological formations, which also disappear quickly if environmental conditions change. The 37 coastal lagoons with a surface area greater than 10 km2 located in the Mediterranean basin have been identified. Fishing has been the traditional use of these lagoons, in addition to their use as a navigation harbor when they are open to the sea. Pollution, quality problems and their consequences are the most studied topics in recent publications. Sentinel-2 images taken in the summer of 2020 have been used to study water transparency, suspended matter and chlorophyll a concentration. The result was that only six of them are in good ecological condition, but most of them are eutrophic due to the impacts on their environment and the inflow of poor quality water. The cultural values of these lagoons must also be protected and preserved.

An Integrated Approach for Evaluating the Restoration of the Salinity Gradient in Transitional Waters: Monitoring and Numerical Modeling in the Life Lagoon Refresh Case Study

Large lagoons usually show a salinity gradient due to fresh water tributaries with inner areas characterized by lower mean values and higher fluctuation of salinity than seawater-dominated areas. In the Venice Lagoon, this ecotonal environment, characterized in the past by oligo-mesohaline waters and large intertidal areas vegetated by reedbeds, was greatly reduced by historical human environmental modifications, including the diversion of main rivers outside the Venice Lagoon. The reduction of the fresh water inputs caused a marinization of the lagoon, with an increase in salinity and the loss of the related habitats, biodiversity, and ecosystem services. To counteract this issue, conservation actions, such as the construction of hydraulic infrastructures for the introduction and the regulation of a fresh water flow, can be implemented. The effectiveness of these actions can be preliminarily investigated and then verified through the combined implementation of environmental monitoring and numerical modeling. Through the results of the monitoring activity carried out in Venice Lagoon in the framework of the Life Lagoon Refresh (LIFE16NAT/IT/000663) project, the study of salinity is shown to be a successful and robust combination of different types of monitoring techniques. In particular, the characterization of salinity is obtained by the acquisition of continuous data, field campaigns, and numerical modeling.

Effects of Groundwater Inputs to the Hydraulic Circulation, Water Residence Time, and Salinity in a Moroccan Atlantic Lagoon

The finite element model SHYFEM was used to study the hydrodynamics and variability of water level, salinity, temperature, and water residence time (WRT) in the Oualidia lagoon located on the Moroccan Atlantic coast. The lagoon hosts a RAMSAR convention-protected area and also offers a set of valuable ecosystem services providing the source of income for the local population. To assess the effects of submarine groundwater discharge (SGD) inputs in the study area, four simulations were set up using different SGD inputs estimates in addition to tidal forcing, bathymetry, meteorological data including solar radiation, rain, and wind, in addition to boundary conditions in the Atlantic such as salinity, water level, and water temperature. The model was calibrated and validated using hydrodynamic measurements of previous studies in 2012 and 2013. The final results from the model are in good agreement with measured data. The simulation with SGD input ~0.05 m3 s−1 produced salinity values closest to the observed ones. Calculated spatial distribution of WRT, temperature, and salinity reduced to coordinates in two PCA axes is consistent with lagoon zones developed earlier using the benthic macroinvertebrate distribution. The calculated spatial distribution of WRT allowed us to evaluate the placement of oyster aquaculture farms and small-scale fisheries in relation to water quality issues existing in the lagoon.

Hydro-Saline Dynamics of a Shallow Mediterranean Coastal Lagoon: Complementary Information from Short and Long Term Monitoring

The Vaccarès Lagoon System, located in the central part of the Rhône Delta (France), is a complex shallow coastal lagoon, exposed to a typical Mediterranean climate and a specific hydrological regime affected by man-controlled exchanges with the sea and agricultural drainage channels. In this article, we report the results obtained by a series of monitoring programs, with different spatial and temporal resolutions. Long-term datasets from 1999 to 2019 with data collected on a monthly basis and a high spatial resolution highlighted the significant spatial heterogeneity in salinity regimes, and helped to determine the long-term evolution of the total mass of dissolved salt. High-frequency surveys allowed to characterize the water levels and salinity dynamics seasonal response to (i) the exchanges with the Mediterranean Sea, (ii) the exchanges with agricultural drainage channels, and (iii) the rain and evaporation. In addition, wind effects on salinity variations are also explored. This work shows how different spatial and temporal monitoring strategies provide complementary information on the dynamic of such a complex system. Results will be useful and provide insight for the management of similar lagoon systems, accommodating for both human activities and ecological stakes in the context of global change.

Hydrodynamic and Hydrographic Modeling of Istanbul Strait

The aim of this study is to model the hydrodynamic processes of the Istanbul Strait with its stratified flow characteristics, and calibrate the most important parameters using local and global search algorithms. For that, two open boundary conditions are defined, which are in the northern and southern parts of the Strait. Observed bathymetric, hydrographic, meteorological, and water-level data are used to set up the Delft3D-FLOW model. First, the sensitivities of the model parameters on the numerical model outputs are assessed using Parameter EStimation Tool (PEST) toolbox. Then, the model is calibrated based on the objective functions, focusing on the flow rates of the upper and lower layers. The salinity and temperature profiles of the strait are only used for model validation. The results show that the calibrated model outputs of the Istanbul Strait are reliable and consistent with the in situ measurements. The sensitivity analysis reveals that the spatial low-pass filter coefficient, horizontal eddy viscosity, Prandtl–Schmidt number, slope in log–log spectrum, and Manning roughness coefficient are most sensitive parameters affecting the flow rate performance of the model. The agreement between observed salinity profiles and simulated model outputs is promising, whereas the match between observed and simulated temperature profiles is weak, showing that the model can be improved, particularly for simulating the mixing layer.

Meiofaunal Dynamics and Heterogeneity along Salinity and Trophic Gradients in a Mediterranean Transitional System

The spatiotemporal variation in meiofaunal assemblages were investigated for the first time in the Cabras Lagoon, the largest transitional system in the Sardinian Island (W-Mediterranean Sea). Two main environmental (salinity and trophic) gradients highlighted a significant separation of the three study sites across the lagoon, which were consistent through time. The environmental variability and habitat heterogeneity of the Cabras Lagoon influenced the meiofauna. In particular, salinity and dissolved oxygen, primarily, shaped the meiofaunal assemblage structure at the seaward site which was significantly different from both the riverine and the organically enriched sites. On the other hand, the trophic components (e.g., organic matter, Chlorophyll-a, and phaeopigments) and the different degrees of confinement and saprobity among sites were the secondary factors contributing mostly to the separation between the latter two sites. The lack of significant differences in the temporal comparison of the meiofaunal assemblage structure along with the very low contribution of temperature to the meiofaunal ordination indicated that this assemblage was more affected by spatial rather than by temporal variation. This pattern was also supported by significant differences between the three sites in several univariate measures, including total number of individuals, number of taxa, Pielou’s evenness, and the ratio between nematodes and copepods. Thus, the present study corroborates the hypothesis that meiofaunal organisms are good indicators of the spatial heterogeneity in transitional waters (TWs) and could have a greater species richness than that expected. Indeed, the Cabras Lagoon overall showed one of the highest meiofaunal richness values found from both Mediterranean and European TWs.

Assessment of temporal and spatial water quality in international Gomishan Lagoon, Iran, using multivariate analysis

Coastal lagoon ecosystems are vulnerable to eutrophication, which leads to the accumulation of nutrients from the surrounding watershed over the long term. However, there is a lack of information about methods that could accurate quantify this problem in rapidly developed countries. Therefore, various statistical methods such as cluster analysis (CA), principal component analysis (PCA), partial least square (PLS), principal component regression (PCR), and ordinary least squares regression (OLS) were used in this study to estimate total organic matter content in sediments (TOM) using other parameters such as temperature, dissolved oxygen (DO), pH, electrical conductivity (EC), nitrite (NO₂), nitrate (NO₃), biological oxygen demand (BOD), phosphate (PO₄), total phosphorus (TP), salinity, and water depth along a 3-km transect in the Gomishan Lagoon (Iran). Results indicated that nutrient concentration and the dissolved oxygen gradient were the most significant parameters in the lagoon water quality heterogeneity. Additionally, anoxia at the bottom of the lagoon in sediments and re-suspension of the sediments were the main factors affecting internal nutrient loading. To validate the models, R², RMSECV, and RPDCV were used. The PLS model was stronger than the other models. Also, classification analysis of the Gomishan Lagoon identified two hydrological zones: (i) a North Zone characterized by higher water exchange, higher dissolved oxygen and lower salinity and nutrients, and (ii) a Central and South Zone with high residence time, higher nutrient concentrations, lower dissolved oxygen, and higher salinity. A recommendation for the management of coastal lagoons, specifically the Gomishan Lagoon, to decrease or eliminate nutrient loadings is discussed and should be transferred to policy makers, the scientific community, and local inhabitants.

Estuarine circulation in the Taranto Seas

The Taranto basin is a shallow water marine system in the South of Italy characterized by the presence of a lagoon environment together with a semi-enclosed bay connected to the Ionian Sea. This marine system experienced over the last few decades strong biochemical pollution and environmental degradation, and it is considered a hotspot study site for economic, ecological and scientific reasons. The aim of this study was to examine, on an annual temporal scale and with high spatial resolution, the main hydrodynamical processes and transport scales of the system by means of a 3D finite element numerical model application, adopting the most realistic forcing available. The model allowed us to assess the role played by baroclinic terms in the basin circulation, describing its estuarine nature. In particular, the main features of water circulation, salinity and temperature distribution, water renewal time and bottom stress were investigated. Our results allowed us to equate this system dynamic to that of a weakly stratified estuary, identifying the main driving sources of this mechanism. The vertical stratification over the whole year was proved to be stable, leading to a dual circulation flowing out on the surface, mainly through Porta Napoli channel, and inflowing on the bottom mainly through Navigabile channel. This process was responsible also for the renewal time faster on the bottom of the Mar Piccolo basin than the surface. Due to the great importance of the Taranto basin for what concerns sediment pollution, also the effect of currents in terms of bottom stress was investigated, leading to the conclusion that only in the inlets area the values of bottom stress can be high enough to cause erosion.

A model for describing the eutrophication in a heavily regulated coastal lagoon. Application to the Albufera of Valencia (Spain)

A simplified two-dimensional eutrophication model was developed to simulate temporal and spatial variations of chlorophyll-a in heavily regulated coastal lagoons. This model considers the hydrodynamics of the whole study area, the regulated connexion of the lagoon with the sea, the variability of the input and output nutrient loads, the flux from the sediments to the water column, the phytoplankton growth and mortality kinetics, and the zooplankton grazing. The model was calibrated and validated by applying it to the Albufera of Valencia, a hypertrophic system whose connection to the sea is strongly regulated by a system of sluice-gates. The calibration and validation results presented a significant agreement between the model and the data obtained in several surveys. The accuracy was evaluated using a quantitative analysis, in which the average uncertainty of the model prediction was less than 6%. The results confirmed an expected phytoplankton bloom in April and October, achieving mean maximum values around 250 μg l(-1) of chlorophyll-a. A mass balance revealed that the eutrophication process is magnified by the input loads of nutrients, mainly from the sediments, as well as by the limited connection of the lagoon with the sea. This study has shown that the developed model is an efficient tool to manage the eutrophication problem in heavily regulated coastal lagoons.

Investigation of residence time and groundwater flux in Venice Lagoon: comparing radium isotope and hydrodynamic models

The four naturally-occurring isotopes of radium were coupled with a previously evaluated hydrodynamic model to determine the apparent age of surface waters and to quantify submarine groundwater discharge (SGD) into the Venice Lagoon, Italy. Mean apparent age of water in the Venice Lagoon was calculated using the ratio of 224Ra to 228Ra determined from 30 monitoring stations and a mean pore water end member. Average apparent age was calculated to be 6.0 d using Ra ratios. This calculated age was very similar to average residence time calculated for the same period using a hydrodynamic model (5.8 d). A mass balance of Ra was accomplished by quantifying each of the sources and sinks of Ra in the lagoon, with the unknown variable being attributed to SGD. Total SGD were calculated to be 4.1 +/- 1.5, 3.8 +/- 0.7, 3.0 +/- 1.3, and 3.5 +/- 1.0 x 10(10) L d(-1) for (223,224,226, 228)Ra, respectively, which are an order of magnitude larger than total mean fluvial discharge into the Venice Lagoon (3.1 x 10(9) L d(-1)). The SGD as a source of nutrients in the Venice Lagoon is also discussed and, though significant to the nutrient budget, is likely to be less important as the dominant control on SGD is recirculated seawater rather than freshwater.

Sediment characteristics and macrofauna distribution along a human-modified inlet in the Gulf of Oristano (Sardinia, Italy)

We studied the spatial variability and within-year temporal changes in hydrological features, grain size composition and chemical characteristics of sediments, as well as macrofaunal assemblages, along a heavily modified inlet in the Gulf of Oristano (western Sardinia, Italy). The inlet connects the Cabras lagoon to the gulf through a series of convoluted creeks and man-made structures, including a dam and fish barriers built in the last three decades. Sediments were muddy and mainly composed of the "non-sortable" fraction (i.e., <8 microm particle size) in all four areas investigated: Lagoon, Creeks, Channel and Seaward. Along the inlet, however, the ratio between the <8 microm and the 8-64 microm fractions was highest in Creeks and Channel, between the fish barriers and the dam, suggesting impaired hydrodynamics. Consistently, steep gradients in water salinity, temperature and dissolved oxygen concentrations were found in proximity to the fish barriers. The whole inlet was characterized by a major organic enrichment of sediments, with up to an annual mean of 33.6% of organic matter and 11.7% of total organic carbon in Seaward due to the presence of seagrass leaf litter. Acid-volatile sulphide and chromium-reduced sulphur concentrations were highest throughout the year in Seaward and Lagoon, respectively, with a peak in summer. Consistently, the whole inlet supported low structured macrofaunal assemblages dominated by few opportunist species, with a relatively lower diversity in Lagoon throughout the year and the highest abundances in Seaward in summer. We infer that the presence of artificial structures along the inlet, such as fish barriers and the dam, impair the lagoon-gulf hydrodynamics, sediment exchange and animal recruitment and colonization. We suggest that the removal of these structures would favour water renewal in the Cabras lagoon, but would also increase the outflow of organic C-bonding fine particles into the gulf with serious consequences for Posidonia oceanica and Cymodocea nodosa seagrass meadows. We conclude that all possible consequences of such initiatives should be carefully considered before any action is taken.