Vibrio sp. ArtGut-C1, a polyhydroxybutyrate producer isolated from the gut of the aquaculture live diet Artemia (Crustacea)

Marine microbes suppressed Vibrio and enhanced biological performance of euryhaline rotifer, Brachionus plicatilis

The excessive use of antibiotics in mariculture has surpassed permitted levels, leading to their release into surrounding waters and accumulation in cultured organisms, which poses risks to human health and highlighting the urgent need for alternatives to reduce antibiotic use. Therefore, the present study aimed to test four microbes including Debaryomyces hansenii, Ruegeria mobilis, Lactobacillus plantarum and Bacillus subtilis, on lowering Vibrio, promoting population increase and survival of Brachionus plicatilis. The digestive enzymes activity including α-amylase, lipase and protease, microbial retention and biochemical composition of rotifers were analyzed. Rotifers with a density of 50 ind/mL were distributed into five treatments (four experimental and a control, quadruplicate, repeated thrice). Each microbe's concentration of 108CFU/mL-1 was applied to the culture condition. L. plantarum and B. subtilis decreased Vibrio and increased the population and survival of rotifers, due to successful colonization, resulting in better nutritional utilization and retention in these groups. Higher enzymatic activity and microbial retention were observed in B. subtilis group. The present findings demonstrate that L. plantarum and B. subtilis could be promising microbes for culture of B. plicatilis to lower Vibrio and ensure higher yields. Identifying a sustainable approach to inhibit Vibrio while enhancing rotifers' performance as the primary food source for marine larviculture is undoubtedly essential.

Highlighting antibiotic-free aquaculture by using marine microbes as a sustainable method to suppress Vibrio and enhance the performance of brine shrimp (Artemia franciscana)

Brine shrimp nauplii are widely used as live food in fish and shellfish aquaculture but they may transmit pathogenic Vibrio to the target species causing significant economic loss. Heavy usage of antibiotics is expensive and environmentally damaging. Use of natural microbes as probiotics for disease management is a more sustainable strategy. In this study the abilities of four marine microbes-Debaryomyces hansenii, Ruegeria mobilis, Lactobacillus plantarum and Bacillus subtilis-to suppress Vibrio spp. and promote growth performance and survival of brine shrimp (Artemia franciscana) were investigated. Nauplii (Instar II) were exposed to 108 CFU mL-1 of one of the four microbes; a control without added microbes was included for comparison. The nauplii were fed daily with the microalga Nannochloropsis oculata. Population change, survival, weight gain, length gain, enzyme activity, microbial retention and body biochemical composition of the brine shrimp were measured. The results showed that B. subtilis and L. plantarum significantly decreased the body loading of Vibrio spp. in A. franciscana. Survival rate, weight gain and length gain of (A) franciscana all increased in L. plantarum and (B) subtilis treatments, but the growth performance in the D. hansenii and R. mobilis treatments was less consistent. Higher lipase and protease activities and lower body ash content in the brine shrimp were observed in the B. subtilis and L. plantarum treatments (P < 0.05). The abundance of B. subtilis in the brine shrimp was relatively stable even after 8 days of starvation. These findings demonstrate that B. subtilis was the most promising probiotic among the tested species, especially for long-term application without the need for repeated inoculation.

Beneficial microbes to suppress Vibrio and improve the culture performance of copepod Tigriopus japonicus Mori

The use of beneficial microbes, i.e., probiotics, to reduce pathogens and promote the performance of the target species is an important management strategy in mariculture. This study aimed to investigate the potential of four microbes, Debaryomyces hansenii, Ruegeria mobilis, Lactobacillus plantarum, and Bacillus subtilis, to suppress Vibrio and increase survival, population growth and digestive enzyme activity (protease, lipase, and amylase) in the harpacticoid copepod, Tigriopus japonicus. Copepod, T. japonicus stock culture with an initial mean density of 50 individual/mL (25 adult male and 25 adult female) was distributed into five treatments (i.e., four experimental and a control, each with four replicates; repeated twice) using 20 beakers (100 mL capacity each). The copepods were fed a mixture of the dinoflagellate Alexandrium tamarense and the diatom Phyaeodactylum tricornutum (3 × 104 cells/mL-1). Each microbe's concentration was adjusted at 108 CFU/mL-1 and applied to the culture condition. D. hansenii, L. plantarum, and B. subtilis all improved the copepods' survival and population growth, likely by including a higher lipase activity (P < 0.05). In contrast, using R. mobilis did not improve the copepod's culture performance compared to control. B. subtilis was the most effective in decreasing the copepod's external and internal Vibrio loading. The probiotic concentrations in the copepod decreased within days during starvation, suggesting that routine re-application of the probiotics would be needed to sustain the microbial populations and the benefits they provide. Our results demonstrated that D. hansenii and B. subtilis are promising probiotics for mass copepod culture as live food for mariculture purposes.

Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus)

BACKGROUND

Acute hepatopancreatic necrosis disease (AHPND) is an important shrimp bacterial disease caused by some Vibrio species. The severity of the impact of this disease on aquaculture worldwide has made it necessary to develop alternatives to prophylactic antibiotics use, such as the application of probiotics. To assess the potential to use probiotics in order to limit the detrimental effects of AHNPD, we evaluated the effect of the ILI strain, a Vibrio sp. bacterium and efficient shrimp probiotic, using metabarcoding (16S rRNA gene) on the gastrointestinal microbiota of shrimp after being challenged with AHPND-causing V. parahaemolyticus.

RESULTS

We showed how the gastrointestinal microbiome of shrimp varied between healthy and infected organisms. Nevertheless, a challenge of working with AHPND-causing Vibrio pathogens and Vibrio-related bacteria as probiotics is the potential risk of the probiotic strain becoming pathogenic. Consequently, we evaluated whether ILI strain can acquire the plasmid pV-AHPND via horizontal transfer and further cause the disease in shrimp. Conjugation assays were performed resulting in a high frequency (70%) of colonies harboring the pv-AHPND. However, no shrimp mortality was observed when transconjugant colonies of the ILI strain were used in a challenge test using healthy shrimp. We sequenced the genome of the ILI strain and performed comparative genomics analyses using AHPND and non-AHPND Vibrio isolates. Using available phylogenetic and phylogenomics analyses, we reclassified the ILI strain as Vibrio diabolicus. In summary, this work represents an effort to study the role that probiotics play in the normal gastrointestinal shrimp microbiome and in AHPND-infected shrimp, showing that the ILI probiotic was able to control pathogenic bacterial populations in the host's gastrointestinal tract and stimulate the shrimp's survival. The identification of probiotic bacterial species that are effective in the host's colonization is important to promote animal health and prevent disease.

CONCLUSIONS

This study describes probiotic bacteria capable of controlling pathogenic populations of bacteria in the shrimp gastrointestinal tract. Our work provides new insights into the complex dynamics between shrimp and the changes in the microbiota. It also addresses the practical application of probiotics to solve problems with pathogens that cause high mortality-rate in shrimp farming around the world. Video Abstract.