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Sevmezler S, Çol S, Emirik M, Ceylan D, Baran A. Versatile synthesis of rac‐ and meso‐ hydroxymethyl cyclohexenoids containing phenyl groups: α‐, β‐ Glucosidase activities, inhibition kinetics and molecular docking studies. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Sedat Sevmezler
- Sakarya University: Sakarya Universitesi Department of Chemistry TURKEY
| | - Sümeyye Çol
- Sakarya University: Sakarya Universitesi Department of Chemistry TURKEY
| | - Mustafa Emirik
- Recep Tayyip Erdogan Universitesi Department of Chemistry TURKEY
| | - Davut Ceylan
- Sakarya University: Sakarya Universitesi Faculty of Medicine TURKEY
| | - Arif Baran
- Sakarya Universitesi chemistry sakarya university 54187 sakarya TURKEY
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2
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Gregson AM, Wales SM, Bailey SJ, Willis AC, Keller PA. Cyclic Phosphine Oxides and Phosphinamides from Di-Grignard Reagents and Phosphonic Dichlorides: Modular Access to Annulated Phospholanes. J Org Chem 2015; 80:9774-80. [PMID: 26355687 DOI: 10.1021/acs.joc.5b01476] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The reaction between 1,4-di-Grignard reagents and phosphonous(III) dichlorides is a classical method for the direct synthesis of phospholanes. Reported here is an extension of this approach to the preparation of value-added, annulated phospholane oxides, achieved through the combination of carbocyclic-fused di-Grignard reagents and readily available phosphonic(V) dichlorides. The procedure is amenable to (benz)annulation at both the 2,3- and 3,4-positions of the phospholane ring, and a variety of aliphatic, cyclic and aryl P-electrophiles are tolerated in reasonable to excellent yields.
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Affiliation(s)
- Aaron M Gregson
- School of Chemistry, University of Wollongong , Wollongong, NSW 2522, Australia
| | - Steven M Wales
- School of Chemistry, University of Wollongong , Wollongong, NSW 2522, Australia
| | - Stephen J Bailey
- School of Chemistry, University of Wollongong , Wollongong, NSW 2522, Australia
| | - Anthony C Willis
- Research School of Chemistry, The Australian National University , Canberra, ACT 2601, Australia
| | - Paul A Keller
- School of Chemistry, University of Wollongong , Wollongong, NSW 2522, Australia
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Gregson AM, Wales SM, Bailey SJ, Keller PA. Arsenous chloride-free synthesis of cyclic tertiary organoarsines from arylarsine oxides and di-Grignard reagents. J Organomet Chem 2015. [DOI: 10.1016/j.jorganchem.2015.03.006] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Aydin G, Ally K, Aktaş F, Şahin E, Baran A, Balci M. Synthesis and α-Glucosidase and α-Amylase Inhibitory Activity Evaluation of Azido- and Aminocyclitols. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402762] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Lutz V, Mannchen F, Krebs M, Park N, Krüger C, Raja A, Sasse F, Baro A, Laschat S. SAR studies on hydropentalene derivatives--Important core units of biologically active tetramic acid macrolactams and ptychanolides. Bioorg Med Chem 2014; 22:3252-61. [PMID: 24856181 DOI: 10.1016/j.bmc.2014.04.063] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2014] [Revised: 04/28/2014] [Accepted: 04/29/2014] [Indexed: 10/25/2022]
Abstract
Structurally diverse bicyclo[3.3.0]octanes were prepared and tested for their biological activity. Both the antiproliferative activity and the results of phenotypic characterization varied with the substitution patterns. Two derivatives displayed high inhibitory (IC50 ≤3μM) activity against the L-929 cell line, but differed in their mode of action. A cluster analysis with impedance profiling data showed the two compounds in relationship to microtubule interfering compounds. In PtK2 cells treated with both derivatives a perturbing effect on the microtubular network was observed, whereas the actin cytoskeleton in incubated PtK2 cells was disturbed only by one compound. The effects on tubulin and actin polymerization could be confirmed by in vitro polymerization experiments.
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Affiliation(s)
- Vanessa Lutz
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Fabian Mannchen
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Michael Krebs
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Natja Park
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Claudia Krüger
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Aruna Raja
- Department of Chemical Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 Braunschweig, Germany
| | - Florenz Sasse
- Department of Chemical Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 Braunschweig, Germany.
| | - Angelika Baro
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Sabine Laschat
- Institut für Organische Chemie der Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany.
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Niu M, Dong F, Tang S, Fida G, Qin J, Qiu J, Liu K, Gao W, Gu Y. Pharmacophore modeling and virtual screening for the discovery of new type 4 cAMP phosphodiesterase (PDE4) inhibitors. PLoS One 2013; 8:e82360. [PMID: 24340020 PMCID: PMC3858292 DOI: 10.1371/journal.pone.0082360] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2013] [Accepted: 10/23/2013] [Indexed: 11/19/2022] Open
Abstract
Type 4 cAMP phosphodiesterase (PDE4) inhibitors show a broad spectrum of anti-inflammatory effects in almost all kinds of inflamed cells, by an increase in cAMP levels which is a pivotal second messenger responsible for various biological processes. These inhibitors are now considered as the potential drugs for treatment of chronic inflammatory diseases. However, some recently marketed inhibitors e.g., roflumilast, have shown adverse effects such as nausea and emesis, thus restricting its use. In order to identify novel PDE4 inhibitors with improved therapeutic indexes, a highly correlating (r = 0.963930) pharmacophore model (Hypo1) was established on the basis of known PDE4 inhibitors. Validated Hypo1 was used in database screening to identify chemical with required pharmacophoric features. These compounds are further screened by using the rule of five, ADMET and molecular docking. Finally, twelve hits which showed good results with respect to following properties such as estimated activity, calculated drug-like properties and scores were proposed as potential leads to inhibit the PDE4 activity. Therefore, this study will not only assist in the development of new potent hits for PDE4 inhibitors, but also give a better understanding of their interaction with PDE4. On a wider scope, this will be helpful for the rational design of novel potent enzyme inhibitors.
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Affiliation(s)
- Miaomiao Niu
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Fenggong Dong
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Shi Tang
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Guissi Fida
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Jingyi Qin
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Jiadan Qiu
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Kangbo Liu
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Weidong Gao
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
| | - Yueqing Gu
- Department of Biomedical Engineering, School of Life Science and Technology, China Pharmaceutical University, Nanjing, China
- * E-mail:
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Adams GL, Carroll PJ, Smith AB. Access to the akuammiline family of alkaloids: total synthesis of (+)-scholarisine A. J Am Chem Soc 2013; 135:519-28. [PMID: 23268611 PMCID: PMC3557466 DOI: 10.1021/ja3111626] [Citation(s) in RCA: 102] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The planning and implementation of an enantioselective total synthesis of (+)-scholarisine A is presented. Key tactics employed include a novel cyclization, consisting of a nitrile reduction coupled with concomitant addition of the resultant amine to an epoxide; a modified Fischer indolization; an oxidative lactonization of a diol in the presence of an indole ring; and a late-stage cyclization to complete the caged ring scaffold. The development of a possible "retro-biosynthetic" approach to other members of the akuammiline alkaloid family is also described.
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Affiliation(s)
- Gregory L. Adams
- Department of Chemistry, Laboratory for Research on the Structure of Matter, and Monell Chemical Senses Center, University of Pennsylvania, Philadelphia, Pennsylvania 19104
| | - Patrick J. Carroll
- Department of Chemistry, Laboratory for Research on the Structure of Matter, and Monell Chemical Senses Center, University of Pennsylvania, Philadelphia, Pennsylvania 19104
| | - Amos B. Smith
- Department of Chemistry, Laboratory for Research on the Structure of Matter, and Monell Chemical Senses Center, University of Pennsylvania, Philadelphia, Pennsylvania 19104
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Baran A, Balci M. Stereoselective Synthesis of Bishomo-inositols as Glycosidase Inhibitors. J Org Chem 2008; 74:88-95. [DOI: 10.1021/jo801344f] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Arif Baran
- Department of Chemistry, Middle East Technical University, 06531 Ankara, Turkey, and Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey
| | - Metin Balci
- Department of Chemistry, Middle East Technical University, 06531 Ankara, Turkey, and Department of Chemistry, Sakarya University, 54100 Sakarya, Turkey
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Huigens RW, Richards JJ, Parise G, Ballard TE, Zeng W, Deora R, Melander C. Inhibition of Pseudomonas aeruginosa Biofilm Formation with Bromoageliferin Analogues. J Am Chem Soc 2007; 129:6966-7. [PMID: 17500516 DOI: 10.1021/ja069017t] [Citation(s) in RCA: 104] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Robert W Huigens
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, USA
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