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Klug K, Beckh K, Antweiler D, Chakraborty N, Baldini G, Laue K, Hosch R, Nensa F, Schuler M, Giesselbach S. From admission to discharge: a systematic review of clinical natural language processing along the patient journey. BMC Med Inform Decis Mak 2024; 24:238. [PMID: 39210370 PMCID: PMC11360876 DOI: 10.1186/s12911-024-02641-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 08/20/2024] [Indexed: 09/04/2024] Open
Abstract
BACKGROUND Medical text, as part of an electronic health record, is an essential information source in healthcare. Although natural language processing (NLP) techniques for medical text are developing fast, successful transfer into clinical practice has been rare. Especially the hospital domain offers great potential while facing several challenges including many documents per patient, multiple departments and complex interrelated processes. METHODS In this work, we survey relevant literature to identify and classify approaches which exploit NLP in the clinical context. Our contribution involves a systematic mapping of related research onto a prototypical patient journey in the hospital, along which medical documents are created, processed and consumed by hospital staff and patients themselves. Specifically, we reviewed which dataset types, dataset languages, model architectures and tasks are researched in current clinical NLP research. Additionally, we extract and analyze major obstacles during development and implementation. We discuss options to address them and argue for a focus on bias mitigation and model explainability. RESULTS While a patient's hospital journey produces a significant amount of structured and unstructured documents, certain steps and documents receive more research attention than others. Diagnosis, Admission and Discharge are clinical patient steps that are researched often across the surveyed paper. In contrast, our findings reveal significant under-researched areas such as Treatment, Billing, After Care, and Smart Home. Leveraging NLP in these stages can greatly enhance clinical decision-making and patient outcomes. Additionally, clinical NLP models are mostly based on radiology reports, discharge letters and admission notes, even though we have shown that many other documents are produced throughout the patient journey. There is a significant opportunity in analyzing a wider range of medical documents produced throughout the patient journey to improve the applicability and impact of NLP in healthcare. CONCLUSIONS Our findings suggest that there is a significant opportunity to leverage NLP approaches to advance clinical decision-making systems, as there remains a considerable understudied potential for the analysis of patient journey data.
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Grants
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- 5-2011-0041/2 Ministry for Economic Affairs, Industry, Climate Action and Energy of the State of North-Rhine-Westphalia, Germany
- Fraunhofer-Institut für Intelligente Analyse- und Informationssysteme IAIS (1050)
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Affiliation(s)
| | | | | | | | - Giulia Baldini
- Institute of Interventional and Diagnostic Radiology and Neuroradiology, University Hospital Essen, Essen, Germany
- Institute for Artificial Intelligence in Medicine, University Hospital Essen, Essen, Germany
| | - Katharina Laue
- West German Cancer Centre, University Hospital Essen, Essen, Germany
| | - René Hosch
- Institute of Interventional and Diagnostic Radiology and Neuroradiology, University Hospital Essen, Essen, Germany
- Institute for Artificial Intelligence in Medicine, University Hospital Essen, Essen, Germany
| | - Felix Nensa
- Institute of Interventional and Diagnostic Radiology and Neuroradiology, University Hospital Essen, Essen, Germany
- Institute for Artificial Intelligence in Medicine, University Hospital Essen, Essen, Germany
| | - Martin Schuler
- West German Cancer Centre, University Hospital Essen, Essen, Germany
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Erdur AC, Rusche D, Scholz D, Kiechle J, Fischer S, Llorián-Salvador Ó, Buchner JA, Nguyen MQ, Etzel L, Weidner J, Metz MC, Wiestler B, Schnabel J, Rueckert D, Combs SE, Peeken JC. Deep learning for autosegmentation for radiotherapy treatment planning: State-of-the-art and novel perspectives. Strahlenther Onkol 2024:10.1007/s00066-024-02262-2. [PMID: 39105745 DOI: 10.1007/s00066-024-02262-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Accepted: 06/13/2024] [Indexed: 08/07/2024]
Abstract
The rapid development of artificial intelligence (AI) has gained importance, with many tools already entering our daily lives. The medical field of radiation oncology is also subject to this development, with AI entering all steps of the patient journey. In this review article, we summarize contemporary AI techniques and explore the clinical applications of AI-based automated segmentation models in radiotherapy planning, focusing on delineation of organs at risk (OARs), the gross tumor volume (GTV), and the clinical target volume (CTV). Emphasizing the need for precise and individualized plans, we review various commercial and freeware segmentation tools and also state-of-the-art approaches. Through our own findings and based on the literature, we demonstrate improved efficiency and consistency as well as time savings in different clinical scenarios. Despite challenges in clinical implementation such as domain shifts, the potential benefits for personalized treatment planning are substantial. The integration of mathematical tumor growth models and AI-based tumor detection further enhances the possibilities for refining target volumes. As advancements continue, the prospect of one-stop-shop segmentation and radiotherapy planning represents an exciting frontier in radiotherapy, potentially enabling fast treatment with enhanced precision and individualization.
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Affiliation(s)
- Ayhan Can Erdur
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany.
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany.
| | - Daniel Rusche
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Daniel Scholz
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Department of Neuroradiology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Johannes Kiechle
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Institute for Computational Imaging and AI in Medicine, Technical University of Munich, Lichtenberg Str. 2a, 85748, Garching, Bavaria, Germany
- Munich Center for Machine Learning (MCML), Technical University of Munich, Arcisstraße 21, 80333, Munich, Bavaria, Germany
- Konrad Zuse School of Excellence in Reliable AI (relAI), Technical University of Munich, Walther-von-Dyck-Straße 10, 85748, Garching, Bavaria, Germany
| | - Stefan Fischer
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Institute for Computational Imaging and AI in Medicine, Technical University of Munich, Lichtenberg Str. 2a, 85748, Garching, Bavaria, Germany
- Munich Center for Machine Learning (MCML), Technical University of Munich, Arcisstraße 21, 80333, Munich, Bavaria, Germany
| | - Óscar Llorián-Salvador
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Department for Bioinformatics and Computational Biology - i12, Technical University of Munich, Boltzmannstraße 3, 85748, Garching, Bavaria, Germany
- Institute of Organismic and Molecular Evolution, Johannes Gutenberg University Mainz (JGU), Hüsch-Weg 15, 55128, Mainz, Rhineland-Palatinate, Germany
| | - Josef A Buchner
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Mai Q Nguyen
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Lucas Etzel
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Institute of Radiation Medicine (IRM), Helmholtz Zentrum, Ingolstädter Landstraße 1, 85764, Oberschleißheim, Bavaria, Germany
| | - Jonas Weidner
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Department of Neuroradiology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Marie-Christin Metz
- Department of Neuroradiology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Benedikt Wiestler
- Department of Neuroradiology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
| | - Julia Schnabel
- Institute for Computational Imaging and AI in Medicine, Technical University of Munich, Lichtenberg Str. 2a, 85748, Garching, Bavaria, Germany
- Munich Center for Machine Learning (MCML), Technical University of Munich, Arcisstraße 21, 80333, Munich, Bavaria, Germany
- Konrad Zuse School of Excellence in Reliable AI (relAI), Technical University of Munich, Walther-von-Dyck-Straße 10, 85748, Garching, Bavaria, Germany
- Institute of Machine Learning in Biomedical Imaging, Helmholtz Munich, Ingolstädter Landstraße 1, 85764, Neuherberg, Bavaria, Germany
- School of Biomedical Engineering & Imaging Sciences, King's College London, Strand, WC2R 2LS, London, London, UK
| | - Daniel Rueckert
- Institute for Artificial Intelligence and Informatics in Medicine, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Faculty of Engineering, Department of Computing, Imperial College London, Exhibition Rd, SW7 2BX, London, London, UK
| | - Stephanie E Combs
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Institute of Radiation Medicine (IRM), Helmholtz Zentrum, Ingolstädter Landstraße 1, 85764, Oberschleißheim, Bavaria, Germany
- Partner Site Munich, German Consortium for Translational Cancer Research (DKTK), Munich, Bavaria, Germany
| | - Jan C Peeken
- Department of Radiation Oncology, TUM School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str., 81675, Munich, Bavaria, Germany
- Institute of Radiation Medicine (IRM), Helmholtz Zentrum, Ingolstädter Landstraße 1, 85764, Oberschleißheim, Bavaria, Germany
- Partner Site Munich, German Consortium for Translational Cancer Research (DKTK), Munich, Bavaria, Germany
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Yoshihara H, Fukuda M, Hanawa T, Tsugawa Y. Identifying sex from pharyngeal images using deep learning algorithm. Sci Rep 2024; 14:17954. [PMID: 39095416 PMCID: PMC11297026 DOI: 10.1038/s41598-024-68817-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 07/29/2024] [Indexed: 08/04/2024] Open
Abstract
The pharynx is one of the few areas in the body where blood vessels and immune tissues can readily be observed from outside the body non-invasively. Although prior studies have found that sex could be identified from retinal images using artificial intelligence, it remains unknown as to whether individuals' sex could also be identified using pharyngeal images. Demographic information and pharyngeal images were collected from patients who visited 64 primary care clinics in Japan for influenza-like symptoms. We trained a deep learning-based classification model to predict reported sex, which incorporated a multiple instance convolutional neural network, on 20,319 images from 51 clinics. Validation was performed using 4869 images from the remaining 13 clinics not used for the training. The performance of the classification model was assessed using the area under the receiver operating characteristic curve. To interpret the model, we proposed a framework that combines a saliency map and organ segmentation map to quantitatively evaluate salient regions. The model achieved the area under the receiver operating characteristic curve of 0.883 (95% CI 0.866-0.900). In subgroup analyses, a substantial improvement in classification performance was observed for individuals aged 20 and older, indicating that sex-specific patterns between women and men may manifest as humans age (e.g., may manifest after puberty). The saliency map suggested the model primarily focused on the posterior pharyngeal wall and the uvula. Our study revealed the potential utility of pharyngeal images by accurately identifying individuals' reported sex using deep learning algorithm.
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Affiliation(s)
- Hiroshi Yoshihara
- Aillis, Inc., Yaesu Central Tower 7F, 2-2-1 Yaesu, Chuo-ku, Tokyo, 104-0028, Japan.
| | - Memori Fukuda
- Aillis, Inc., Yaesu Central Tower 7F, 2-2-1 Yaesu, Chuo-ku, Tokyo, 104-0028, Japan
| | - Takaya Hanawa
- Aillis, Inc., Yaesu Central Tower 7F, 2-2-1 Yaesu, Chuo-ku, Tokyo, 104-0028, Japan
| | - Yusuke Tsugawa
- Division of General Internal Medicine and Health Service Research, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
- Department of Health Policy and Management, UCLA Fielding School of Public Health, Los Angeles, CA, USA
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Ong JCL, Seng BJJ, Law JZF, Low LL, Kwa ALH, Giacomini KM, Ting DSW. Artificial intelligence, ChatGPT, and other large language models for social determinants of health: Current state and future directions. Cell Rep Med 2024; 5:101356. [PMID: 38232690 PMCID: PMC10829781 DOI: 10.1016/j.xcrm.2023.101356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 10/12/2023] [Accepted: 12/10/2023] [Indexed: 01/19/2024]
Abstract
This perspective highlights the importance of addressing social determinants of health (SDOH) in patient health outcomes and health inequity, a global problem exacerbated by the COVID-19 pandemic. We provide a broad discussion on current developments in digital health and artificial intelligence (AI), including large language models (LLMs), as transformative tools in addressing SDOH factors, offering new capabilities for disease surveillance and patient care. Simultaneously, we bring attention to challenges, such as data standardization, infrastructure limitations, digital literacy, and algorithmic bias, that could hinder equitable access to AI benefits. For LLMs, we highlight potential unique challenges and risks including environmental impact, unfair labor practices, inadvertent disinformation or "hallucinations," proliferation of bias, and infringement of copyrights. We propose the need for a multitiered approach to digital inclusion as an SDOH and the development of ethical and responsible AI practice frameworks globally and provide suggestions on bridging the gap from development to implementation of equitable AI technologies.
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Affiliation(s)
- Jasmine Chiat Ling Ong
- Division of Pharmacy, Singapore General Hospital, Singapore, Singapore; SingHealth Duke-NUS Medicine Academic Clinical Programme, Singapore, Singapore
| | - Benjamin Jun Jie Seng
- MOHH Holdings (Singapore) Pte., Ltd., Singapore, Singapore; SingHealth Duke-NUS Family Medicine Academic Clinical Programme, Singapore, Singapore
| | | | - Lian Leng Low
- SingHealth Duke-NUS Family Medicine Academic Clinical Programme, Singapore, Singapore; Population Health and Integrated Care Office, Singapore General Hospital, Singapore, Singapore; Centre for Population Health Research and Implementation, SingHealth Regional Health System, Singapore, Singapore; Outram Community Hospital, SingHealth Community Hospitals, Singapore, Singapore
| | - Andrea Lay Hoon Kwa
- Division of Pharmacy, Singapore General Hospital, Singapore, Singapore; SingHealth Duke-NUS Medicine Academic Clinical Programme, Singapore, Singapore; Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore
| | - Kathleen M Giacomini
- Department of Bioengineering and Therapeutic Sciences, Schools of Pharmacy and Medicine, University of California, San Francisco, San Francisco, CA, USA
| | - Daniel Shu Wei Ting
- Artificial Intelligence and Digital Innovation Research Group, Singapore Eye Research, Singapore, Singapore; Duke-NUS Medical School, National University of Singapore, Singapore, Singapore; Byers Eye Institute, Stanford University, Stanford, CA, USA.
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5
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Pertuz S, Ortega D, Suarez É, Cancino W, Africano G, Rinta-Kiikka I, Arponen O, Paris S, Lozano A. Saliency of breast lesions in breast cancer detection using artificial intelligence. Sci Rep 2023; 13:20545. [PMID: 37996504 PMCID: PMC10667547 DOI: 10.1038/s41598-023-46921-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 11/07/2023] [Indexed: 11/25/2023] Open
Abstract
The analysis of mammograms using artificial intelligence (AI) has shown great potential for assisting breast cancer screening. We use saliency maps to study the role of breast lesions in the decision-making process of AI systems for breast cancer detection in screening mammograms. We retrospectively collected mammograms from 191 women with screen-detected breast cancer and 191 healthy controls matched by age and mammographic system. Two radiologists manually segmented the breast lesions in the mammograms from CC and MLO views. We estimated the detection performance of four deep learning-based AI systems using the area under the ROC curve (AUC) with a 95% confidence interval (CI). We used automatic thresholding on saliency maps from the AI systems to identify the areas of interest on the mammograms. Finally, we measured the overlap between these areas of interest and the segmented breast lesions using Dice's similarity coefficient (DSC). The detection performance of the AI systems ranged from low to moderate (AUCs from 0.525 to 0.694). The overlap between the areas of interest and the breast lesions was low for all the studied methods (median DSC from 4.2% to 38.0%). The AI system with the highest cancer detection performance (AUC = 0.694, CI 0.662-0.726) showed the lowest overlap (DSC = 4.2%) with breast lesions. The areas of interest found by saliency analysis of the AI systems showed poor overlap with breast lesions. These results suggest that AI systems with the highest performance do not solely rely on localized breast lesions for their decision-making in cancer detection; rather, they incorporate information from large image regions. This work contributes to the understanding of the role of breast lesions in cancer detection using AI.
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Affiliation(s)
- Said Pertuz
- Escuela de Ingenierías Eléctrica Electrónica y de Telecomunicaciones, Universidad Industrial de Santander, Bucaramanga, Colombia
| | - David Ortega
- Escuela de Ingenierías Eléctrica Electrónica y de Telecomunicaciones, Universidad Industrial de Santander, Bucaramanga, Colombia
| | - Érika Suarez
- Escuela de Ingenierías Eléctrica Electrónica y de Telecomunicaciones, Universidad Industrial de Santander, Bucaramanga, Colombia
| | - William Cancino
- Escuela de Ingenierías Eléctrica Electrónica y de Telecomunicaciones, Universidad Industrial de Santander, Bucaramanga, Colombia
| | - Gerson Africano
- Escuela de Ingenierías Eléctrica Electrónica y de Telecomunicaciones, Universidad Industrial de Santander, Bucaramanga, Colombia
| | - Irina Rinta-Kiikka
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- Department of Radiology, Tampere University Hospital, Tampere, Finland
| | - Otso Arponen
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
- Department of Radiology, Tampere University Hospital, Tampere, Finland.
| | - Sara Paris
- Departamento de Imágenes Diagnósticas, Universidad Nacional de Colombia, Bogotá, Colombia
| | - Alfonso Lozano
- Departamento de Imágenes Diagnósticas, Universidad Nacional de Colombia, Bogotá, Colombia
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