A freshwater diatom challenged by Zn: Biochemical, physiological and metabolomic responses of Tabellaria flocculosa(Roth) Kützing

Reveal the mechanism of hepatic oxidative stress in mice induced by photo-oxidation milk using multi-omics analysis techniques

INTRODUCTION

Photo-oxidation is recognized as a contributor to the deterioration of milk quality, posing potential safety hazards to human health. However, there has been limited investigation into the impact of consuming photo-oxidized milk on health.

OBJECTIVES

This study employs multi-omics analysis techniques to elucidate the mechanisms by which photo-oxidized milk induces oxidative stress in the liver.

METHODS

Mouse model was used to determine the effect of the gavage administration of milk with varying degrees of photo-oxidation on the mouse liver. The damage degree was established by measuring serum markers indicative of oxidative stress, and with a subsequent histopathological examination of liver tissues. In addition, comprehensive metabolome, lipidome, and transcriptome analyses were conducted to elucidate the underlying molecular mechanisms of hepatic damage caused by photo-oxidized milk.

RESULTS

A significant elevation in the oxidative stress levels and the presence of hepatocellular swelling and inflammation subsequent to the gavage administration of photo-oxidized milk to mice. Significant alterations in the levels of metabolites such as lumichrome, all-trans-retinal, L-valine, phosphatidylglycerol, and phosphatidylcholine within the hepatic tissue of mice. Moreover, photo-oxidized milk exerted a pronounced detrimental impact on the glycerophospholipid metabolism of mice liver. The peroxisome proliferator-activated receptors (PPAR) signaling pathway enrichment appreciated in the animals that consumed photo-oxidized milk further supports the substantial negative influence of photo-oxidized milk on hepatic lipid metabolism. Gene set enrichment and interaction analyses revealed that photo-oxidized milk inhibited the cytochrome P450 pathway in mice, while also affecting other pathways associated with cellular stress response and lipid biosynthesis.

CONCLUSION

This comprehensive study provides significant evidence regarding the potential health risks associated with photo-oxidized milk, particularly in terms of hepatic oxidative damage. It establishes a scientific foundation for assessing the safety of such milk and ensuring the quality of dairy products.

Assessment of extracellular polymeric substances production and antioxidant defences in periphytic communities exposed to effluent contaminants

Periphyton is frequently used in the evaluation of the ecological status of aquatic ecosystems using diatoms as a proxy. However, periphyton has a particularity, the production of extracellular polymeric substances (EPS), which might play a protective role against exposure to harmful environmental contaminants. Effluents originating in wastewater treatment plants (WWTPs) constitute some of the most complex mixtures of contaminants, to which aquatic ecosystems are frequently exposed, often containing tens to hundreds of different chemicals. In such challenging scenarios, a putative protective role of EPS may obscure the bioindicator value of diatoms. To address this problem, we sampled periphyton upstream and downstream of the effluent outfall from three different WWTPs, quantifying EPS production and simultaneously evaluating general stress responses in the community (protein and sugar content, photosynthetic pigments, antioxidant enzyme activity and oxidative damage). By combining these endpoints with a characterization of the sediments of the riverine systems receiving the effluents made in a previous study (metals, polycyclic aromatic hydrocarbons, pharmaceuticals and personal care products), we aimed to elucidate whether effluent contaminants trigger negative effects, which may be mitigated by EPS layers protecting the communities. Our results indicated that under a comparatively milder contamination burden, EPS production is enhanced in samples collected downstream of the effluent outfall; under a higher contamination burden, EPS production is hampered. Stress-coping mechanisms were activated by environmental contaminants, including the antioxidant defense, particularly through catalase and superoxide dismutase activity. The findings support the generally assumed protective effect of EPS, but also suggest that EPS production depends on the contamination burden and that protective effects should be in place under specific scenarios of, for example, relatively low contamination levels. Overall, the integrative approach used in this study contributes to a better understanding of the complex interplay of interactions between effluent-driven contamination and thriving periphytic communities inhabiting recipient waterways, including evolved protection mechanisms.

Exposure and recovery: The effect of different dilution factors of treated and untreated metal mining effluent on freshwater biofilm function and structure

Abandoned mines generate effluents rich in heavy metals, and these contaminants are released uncontrolled into the nearby aquatic ecosystems, causing severe pollution. However, no real solution exists, leaving a legacy of global pollution. In this study, the efficiency of the treatment technologies in reducing the ecological impacts of mining effluents to freshwater ecosystems with different dilution capacities was tested using biofilm communities as biological indicators. The functional and structural recovery capacity of biofilm communities after 21 days of exposure was assessed. With this aim, we sampled aquatic biofilms from a pristine stream and exposed them to treated (T) and untreated (U) metal mining effluent from Frongoch abandoned mine (Mid Wales, UK). Additionally, we simulated two different flow conditions for the receiving stream: high dilution (HD) and low dilution (LD). After exposure, the artificial streams were filled with artificial water for 14 days to assess the biofilm recovery. Unexposed biofilm served as control for biofilm responses (functional and structural) measured throughout time. During the exposure, short term effects on biofilm functioning (photosynthetic efficiency, nutrient uptake) were observed in T-LD, U-HD, and U-LD, whereas long term effects (community composition, chl-a, and diatom metrics) were observed on the structure of all biofilms exposed to the treated and untreated mining effluent. On the other hand, metal accumulation occurred in biofilms exposed to the mining effluents. However, a functional recovery was observed for all treatments, except in the U-LD in which biofilm structure did not present a significant recovery after the exposure period. The results presented here highlight the need to consider the dilution capacity of the receiving stream to assess the real efficiency of treatment technologies applied to mining effluents to mitigate the ecological impact on freshwater ecosystems.

Heterologous expression of genes from a cyanobacterial endosymbiont highlights substrate exchanges with its diatom host

A few genera of diatoms are widespread and thrive in low-nutrient waters of the open ocean due to their close association with N₂-fixing, filamentous heterocyst-forming cyanobacteria. In one of these symbioses, the symbiont, Richelia euintracellularis, has penetrated the cell envelope of the host, Hemiaulus hauckii, and lives inside the host cytoplasm. How the partners interact, including how the symbiont sustains high rates of N₂ fixation, is unstudied. Since R. euintracellularis has evaded isolation, heterologous expression of genes in model laboratory organisms was performed to identify the function of proteins from the endosymbiont. Gene complementation of a cyanobacterial invertase mutant and expression of the protein in Escherichia coli showed that R. euintracellularis HH01 possesses a neutral invertase that splits sucrose producing glucose and fructose. Several solute-binding proteins (SBPs) of ABC transporters encoded in the genome of R. euintracellularis HH01 were expressed in E. coli, and their substrates were characterized. The selected SBPs directly linked the host as the source of several substrates, e.g. sugars (sucrose and galactose), amino acids (glutamate and phenylalanine), and a polyamine (spermidine), to support the cyanobacterial symbiont. Finally, transcripts of genes encoding the invertase and SBPs were consistently detected in wild populations of H. hauckii collected from multiple stations and depths in the western tropical North Atlantic. Our results support the idea that the diatom host provides the endosymbiotic cyanobacterium with organic carbon to fuel N₂ fixation. This knowledge is key to understanding the physiology of the globally significant H. hauckii-R. euintracellularis symbiosis.

Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure

Diatoms function as major primary producers, accumulating large amounts of biomass in most aquatic environments. Given their rapid responses to changes in environmental conditions, diatoms are used for the biological monitoring of water quality and for performing ecotoxicological tests in aquatic ecosystems. However, the molecular basis for their toxicity to chemical compounds remains largely unknown. Here, we sequenced the genome of a freshwater diatom, Mayamaea pseudoterrestris NIES-4280, which has been proposed as an alternative strain of Navicula pelliculosa UTEX 664 for performing the Organisation for Economic Co-operation and Development ecotoxicological test. This study shows that M. pseudoterrestris has a small genome and carries the lowest number of genes among freshwater diatoms. The gene content of M. pseudoterrestris is similar to that of the model marine diatom, Phaeodactylum tricornutum. Genes related to cell motility, polysaccharide metabolism, oxidative stress alleviation, intracellular calcium signalling, and reactive compound detoxification showed rapid changes in their expression patterns in response to copper exposure. Active gliding motility was observed in response to copper addition, and copper exposure decreased intracellular calcium concentration. These findings enhance our understanding of the environmental adaptation of diatoms, and elucidate the molecular basis of toxicity of chemical compounds in algae.

Testing the response of benthic diatom assemblages to common riverine contaminants

Benthic diatoms constitute keystone assemblages in riverine ecosystems, and their structure is used to support regulatory water quality assessment. However, no standard ecotoxicological tests exist using integrated responses of the benthic diatom assemblages. This work aimed to assess whether benthic diatom assemblages are responsive to different riverine contaminants through a previously developed rapid toxicity test, supporting future attempts towards its standardization and integration in both prospective and retrospective Environmental Risk Assessment (ERA) schemes. We selected two benthic diatoms assemblages likely responding similarly to pollution (similar IPS diatom index score), collected from two rivers in Northern-Central Portugal (sites: Palhal and Cabreia). Fresh whole diatom assemblages were exposed for 48 h to five model contaminants (glyphosate, imidacloprid, SDS, CuSO₄, and Pb). At the end of the test, changes induced by the exposures in overall yield and in the yield of each diatom genus were assessed. The assemblage collected at Palhal was invariably more responsive and sensitive than that collected at Cabreia, both considering overall and genus-specific yields, regardless of the tested contaminant. Achnanthes, Fragilaria and Navicula were the most responsive genus, regardless of the tested contaminant or assemblage. The distinct response profiles observed for the two assemblages to the same contaminants at the same concentration ranges suggest that using this test method to support prospective ERA is inadequate. However, the method can be an asset supporting retrospective ERA, as the responses seem to be shaped by the interplay of resilience drivers promoted by the local conditions, e.g. adaptive changes in assemblage structure.

Ecological and toxicological assessments of anthropogenic contaminants based on environmental metabolomics

There has long been a great concern with growing anthropogenic contaminants and their ecological and toxicological effects on living organisms and the surrounding environment for decades. Metabolomics, a functional readout of cellular activity, can capture organismal responses to various contaminant-related stressors, acquiring direct signatures to illustrate the environmental behaviours of anthropogenic contaminants better. This review entails the application of metabolomics to profile metabolic responses of environmental organisms, e.g. animals (rodents, fish, crustacean and earthworms) and microorganisms (bacteria, yeast and microalgae) to different anthropogenic contaminants, including heavy metals, nanomaterials, pesticides, pharmaceutical and personal products, persistent organic pollutants, and assesses their ecotoxicological impacts with regard to literature published in the recent five years. Contaminant-induced metabolism alteration and up/down-regulation of metabolic pathways are revealed in typical organisms. The obtained insights of variations in global metabolism provide a distinct understanding of how anthropogenic contaminants exert influences on specific metabolic pathways on living organisms. Thus with a novel ecotechnique of environmental metabolomics, risk assessments of anthropogenic contaminants are profoundly demonstrated.

Benthic diatom-based indices and isotopic biomonitoring of nitrogen pollution in a warm temperate Austral river system

Rivers are impacted by pollutants from anthropogenic activities such as urbanisation and agricultural practices. Whilst point source pollution has been widely studied and in some cases remediated, non-point pollutant sources remain pervasive, particularly in developing countries that lack economic and human specialist capacity. Monitoring of pollution levels in many regions is additionally challenged by a lack of robust indicators for nitrogen inputs, however, diatom community indices and analysis of variation in microphytobenthos (MBP) stable isotope analysis variations have potential. The present study investigates variations and utilities in benthic diatom indices and MPB δ¹⁵N along different river sections (n = 31) of an austral river between two seasons (wet and dry), testing for relationships with key environmental variables (physical, water and sediment), in the context of N monitoring. One hundred and eighteen diatom taxa belonging to 36 genera were identified, with physical (water flow), water (nitrate, P and total dissolved solids) and sediment (B, Ca, Cr, Na, N, P, SOM, Pb and Zn) variables correlating to one or more of the 12 diatom indices presented. In particular, Biological Diatom Index, Biological Index of Water Quality, Central Economic Community, Index of Artois-Picardie Diatom (IDAP) and Sládeček's Index were strongly explained by sediment variables, whilst Descy's Pollution Index and Schiefele and Schreiner's Index were explained by water and physical variables. Whilst MPB δ¹⁵N were within the "no impact" level in the wet and dry seasons at reference (i.e. unpolluted) sites, all sites located in agricultural or urban areas, and downstream of sewage discharges, had a wider range that encompassed increasing organic impacts ("inorganic impacts" to high "organic impacts"). Temperature and turbidity (negative), as well as dissolved oxygen, waterway width and depth (positive), significantly affected MPB δ¹⁵N, whilst effects of chemistry variables were less apparent. Overall, we found that MPB δ¹⁵N signatures were significantly correlated with Trophic Diatom Index, the Specific Pollution Sensitivity Index and the Artois-Picardie Diatom Index, suggesting the utility of diatoms and MPB δ¹⁵N in assessments of aquatic pollution. In turn, MPB δ¹⁵N values are strong indicators of N pollution across spatial and seasonal gradients. Thus, the results showed the effects of sediment variables on diatoms to be strong, indicating that sediment rather than water characteristics more strongly structure diatom communities. Thus, sediment variables should be sampled when conducting bioassessment studies.

Mitigation of zinc toxicity through differential strategies in two species of the cyanobacterium Anabaena isolated from zinc polluted paddy field

The present study describes the physiological and biochemical mechanisms of zinc tolerance in two heterocytous cyanobacteria i.e. Anabaena doliolum and Anabaena oryzae, treated with their respective LC₅₀ concentrations of zinc (3 and 4.5 mg L^-1) for eight days. The feedbacks were examined in terms of growth, metabolism, zinc exclusion, zinc accumulation, oxidative stress, antioxidants and metallothionein contents. Although the growth and metabolic activities were reduced in both the cyanobacterium, maximum adversity was noticed in A. doliolum. The higher order of abnormalities in A. doliolum was attributed to excessive accumulation of zinc and enhanced reactive oxygen species (ROS) production. However, the comparatively higher growth and metabolic activities of A. oryzae were ascribed to the lower accumulation of zinc as a result of released polysaccharides mediated zinc exclusion, synthesis of zinc chelating metallothioneins and subsequent less production of ROS. The oxidative stress and macromolecular damages were prominent in both the cyanobacterium but the condition was much harsher in A. doliolum which may be explained by its comparatively low antioxidative enzyme activities (SOD, APX and GR) and smaller amount of ascorbate-glutathione-tocopherol contents than that of A. oryzae. However, sustenance of 50% growth by A. doliolum under zinc stress despite severe cellular damages was attributed to the enhanced synthesis of phenolics, flavonoids, and proline. Thus, differential zinc tolerance in A. doliolum and A. oryzae is possibly the outcome of their distinct mitigation strategies. Although the two test organisms followed pseudo second order kinetics model during zinc biosorption yet they exhibited differential zinc biosorption capacity. The cyanobacterium A. oryzae was found to be more efficient in removing zinc as compared to A. doliolum and this efficiency makes A. oryzae a promising candidate for the phycoremediation of zinc polluted environments.

A novel Cyphos IL 104-based polymer inclusion membrane (PIM) probe to mimic biofilm zinc accumulation

The presence of Zn in surface waters from abandoned mining zones is a critical issue since excess Zn concentrations may affect aquatic life and whole ecosystems. We present, for the first time, a simple tool based on a polymer inclusion membrane (PIM) intended to monitor Zn in river water by mimicking metal accumulation in the biofilm. The PIM-based probe contains a polymeric membrane prepared using cellulose triacetate (CTA, 50% w/w) as the base polymer, nitrophenyloctyl ether (NPOE) as the plasticizer (20% w/w), and the ionic liquid (IL) Cyphos 104 as the extractant (30% w/w). The accumulation of Zn in the acceptor phase (0.01 M HNO₃) was evaluated for different free metal concentrations at 4 h accumulation time resulting in a good correlation between the free metal concentration and the accumulated one. We also found that the metal accumulated agrees with the free metal fraction upon addition of EDTA in the donor solution. The results for Zn accumulation with the PIM-based probe were found to be comparable to those obtained for a biofilm that was grown in a stream from an abandoned mine area and subsequently translocated to the laboratory and put in contact with Zn polluted stream water, so confirming the effectiveness of this new probe in mimicking Zn accumulation in the biofilm.

Metabolome response to anthropogenic contamination on microalgae: a review

BACKGROUND

Microalgae play a key role in ecosystems and are widely used in ecological status assessment. Research focusing on such organisms is then well developed and essential. Anyway, approaches for a better comprehension of their metabolome's response towards anthropogenic stressors are only emerging.

AIM OF REVIEW

This review presents the biochemical responses of various microalgae species towards several contaminants including metals and chemicals as pesticides or industrial compounds. We aim to provide a comprehensive and up-to-date overview of analytical approaches deciphering anthropogenic contaminants impact on microalgae metabolome dynamics, in order to bring out relevant biochemical markers that could be used for risk assessment.

KEY SCIENTIFIC CONCEPTS OF REVIEW

Studies to date on ecotoxicological metabolomics on microalgae are highly heterogeneous in both analytical techniques and resulting metabolite identification. There is a real need for studies using complementary approaches to determine biomarkers usable for ecological risk assessment.

Impact of diuron and S-metolachlor on the freshwater diatom Gomphonema gracile: Complementarity between fatty acid profiles and different kinds of ecotoxicological impact-endpoints

Fatty acids (FA) are crucial for the maintenance of membrane fluidity and play a central role in metabolic energy storage. Polyunsaturated fatty acids play an essential ecological role since they are key parameters in the nutritional value of algae. Pesticide impacts on fatty acid profiles have been documented in marine microalgae, but remain understudied in freshwater diatoms. The aims of this study were to: 1) investigate the impact of diuron and S-metolachlor on "classical descriptors" (photosynthesis, growth rate, pigment contents, and on the expression levels of target genes in freshwater diatoms), 2) examine the impact of these pesticides on diatom fatty acid profiles and finally, 3) compare fatty acid profiles and "classical descriptor" responses in order to evaluate their complementarity and ecological role. To address this issue, the model freshwater diatom Gomphonema gracile was exposed during seven days to diuron and S-metolachlor at 10 μg.L^-1. G. gracile was mostly composed of the following fatty acids: 20:5n3; 16:1; 16:0; 16:3n4; 14:0 and 20:4n6 and highly unsaturated fatty acids were overall the best represented fatty acid class. S-metolachlor decreased the growth rate and chlorophyll a content of G. gracile and induced the expression of cox1, nad5, d1 and cat genes, while no significant impacts were observed on photosynthesis and carotenoid content. In a more global way, S-metolachlor did not impact the fatty acid profiles of G. gracile. Diuron inhibited photosynthesis, growth rate, chlorophyll a content and induced cat and d1 gene expressions but no significant effect was observed on carotenoid content. Diuron decreased the percentage of highly unsaturated fatty acids but increased the percentage of monounsaturated fatty acids. These results demonstrated that fatty acids responded to diuron conversely to pigment content, suggesting that fatty acids can inform on energy content variation in diatoms subjected to herbicide stress.

Substratum-associated microbiota

This survey of 2018 literature on substratum-associated microbiota presents brief highlights on research findings from primarily freshwaters, but includes those from a variety of aquatic ecosystems. Coverage of topics associated with benthic algae and cyanobacteria, though not comprehensive, includes new methods, taxa new to science, nutrient dynamics, trophic interactions, herbicides and other pollutants, metal contaminants, nuisance, bloom-forming and harmful algae, bioassessment, and bioremediation. Coverage of bacteria, also not comprehensive, focused on methylation of mercury, metal contamination, toxins, and other environmental pollutants, including oil, as well as the use of benthic bacteria as bioindicators, in bioassessment tools and in biomonitoring. Additionally, we cover trends in recent and emerging topics on substratum-associated microbiota of relevance to the Water Environment Federation. PRACTITIONER POINTS: This review of literature from 2018 on substratum-associated microbiota presents highlights of findings on algae, cyanobacteria, and bacteria from primarily freshwaters. Topics covered that focus on algae and cyanobacteria include findings on new methods, taxa new to science, nutrient dynamics, trophic interactions, herbicides and other pollutants, metal contaminants, nuisance, bloomforming and harmful algae, bioassessment, and bioremediation. Topics covered that focus on bacteria include findings on methylation of mercury, metal contamination, toxins and other environmental pollutants, including oil, as well as the us e of benthic bacteria as bioindicators, in bioassessment tools and in biomonitoring. A brief presentation of new, noteworthy and emerging topics on substratum-associated microbiota, build on those from 2017, to highlight those of particular relevance to the Water Environment Federation.