Rice root exudates affect microbial methylmercury production in paddy soils

Mercury supply limits methylmercury production in paddy soils

The neurotoxic methylmercury (MeHg) is a product of inorganic mercury (IHg) after microbial transformation. Yet it remains unclear whether microbial activity or IHg supply dominates Hg methylation in paddies, hotspots of MeHg formation. Here, we quantified the response of MeHg production to changes in microbial activity and Hg supply using 63 paddy soils under the common scenario of straw amendment, a globally prevalent agricultural practice. We demonstrate that the IHg supply is the limiting factor for Hg methylation in paddies. This is because IHg supply is generally low in soils and can largely be facilitated (by 336-747 %) by straw amendment. The generally high activities of sulfate-reducing bacteria (SRB) do not limit Hg methylation, even though SRB have been validated as the predominant microbial Hg methylators in paddies in this study. These findings caution against the mobilization of legacy Hg triggered by human activities and climate change, resulting in increased MeHg production and the subsequent flux of this potent neurotoxin to our dining tables.

Differential response of Hg-methylating and MeHg-demethylating microbiomes to dissolved organic matter components in eutrophic lake water

Methylmercury (MeHg) production in aquatic ecosystems is a global concern because of its neurotoxic effect. Dissolved organic matter (DOM) plays a crucial role in biogeochemical cycling of Hg. However, owing to its complex composition, the effects of DOM on net MeHg production have not been fully understood. Here, the Hg isotope tracer technique combined with different DOM treatments was employed to explore the influences of DOM with divergent compositions on Hg methylation/demethylation and its microbial mechanisms in eutrophic lake waters. Our results showed that algae-derived DOM treatments enhanced MeHg concentrations by 1.42-1.53 times compared with terrestrial-derived DOM. Algae-derived DOM had largely increased the methylation rate constants by approximately 1-2 orders of magnitude compared to terrestrial-derived DOM, but its effects on demethylation rate constants were less pronounced, resulting in the enhancement of net MeHg formation. The abundance of hgcA and merB genes suggested that Hg-methylating and MeHg-demethylating microbiomes responded differently to DOM treatments. Specific DOM components (e.g., aromatic proteins and soluble microbial byproducts) were positively correlated with both methylation rate constants and the abundance of Hg-methylating microbiomes. Our results highlight that the DOM composition influences the Hg methylation and MeHg demethylation differently and should be incorporated into future Hg risk assessments in aquatic ecosystems.

Mercury distribution in organisms, litter, and soils of the Middle Araguaia floodplain in Brazil

Mercury (Hg) is a chemical element that, depending on its concentration, may become toxic to living organisms due to the ability of Hg to bioaccumulate in food chains. In this study, we collected samples of soil, litter, and organisms in the Middle Araguaia floodplain, Brazil. Total mercury (THg) concentrations in litter were significantly higher (p < 0.0001) than that in soil, ranging from 10.68 ± 0.55 to 48.94 ± 0.13 and 20.80 ± 1.07 to 55 .19 ± 1.59 ng g-1, respectively. Total mercury concentration levels in soil showed a linear, inversely proportional relationship with soil organic matter (SOM) contents and soil pH, consistent with the geochemical behavior of chemical elements in flooded environments. Ten orders of organisms were identified, and the average THg concentrations determined in their bodies were up to 20 times higher than those in soil and litter. We found a significant linear relationship between the levels of THg in litter and those found in soil organisms, thereby allowing the prediction of THg concentration levels in soil organisms through the analysis of litter at the sample units. The different dynamics and feeding habits of soil organisms and the concentration of THg in these organisms may be influenced by the river's course. This study provides evidence of the bioaccumulation of THg in soil organisms in the floodplain of the Middle Araguaia River, an important river basin in the Brazilian savanna.

Soil Humic Acid Stimulates Potentially Active Dissimilatory Arsenate-Reducing Bacteria in Flooded Paddy Soil as Revealed by Metagenomic Stable Isotope Probing

Dissimilatory arsenate reduction contributes a large proportion of arsenic flux from flooded paddy soil, which is closely linked to soil organic carbon input and efflux. Humic acid (HA) represents a natural ingredient in soil and is shown to enhance microbial arsenate respiration to promote arsenic mobility. However, the community and function profiles of metabolically active arsenate-respiring bacteria and their interactions with HA in paddy soil remain unclear. To probe this linkage, we performed a genome-centric comparison of potentially active arsenate-respiring bacteria in anaerobic microcosms amended with 13C-lactate and HA by combining stable-isotope probing with genome-resolved metagenomics. Indeed, HA greatly accelerated the microbial reduction of arsenate to arsenite. Enrichment of bacteria that harbor arsenate-respiring reductase genes (arrA) in HA-enriched 13C-DNA was confirmed by metagenomic binning, which are affiliated with Firmicutes (mainly Desulfitobacterium, Bacillus, Brevibacillus, and Clostridia) and Acidobacteria. Characterization of reference extracellular electron transfer (EET)-related genes in these arrA-harboring bacteria supports the presence of EET-like genes, with partial electron-transport chain genes identified. This suggests that Gram-positive Firmicutes- and Acidobacteria-related members may harbor unspecified EET-associated genes involved in metal reduction. Our findings highlight the link between soil HA and potentially active arsenate-respiring bacteria, which can be considered when using HA for arsenic removal.

Transcriptomics and physiological analyses reveal that sulfur alleviates mercury toxicity in rice (Oryza sativa L.)

Mercury (Hg) is one of the most dangerous contaminants and has sparked global concern since it poses a health risk to humans when consumed through rice. Sulfur (S) is a crucial component for plant growth, and S may reduce Hg accumulation in rice grains. However, the detailed effects of S and the mechanisms underlying S-mediated responses in Hg-stressed rice plants remain unclear. Currently, to investigate the effects of S addition on rice growth, Hg accumulation, physiological indexes, and gene expression profiles, rice seedlings were hydroponically treated with Hg (20 µmol/L HgCl2) and Hg plus elemental sulfur (100 mg/L). S application significantly reduced Hg accumulation in Hg-stressed rice roots and alleviated the inhibitory effects of Hg on rice growth. S addition significantly reduced Hg-induced reactive oxygen species generation, membrane lipid peroxidation levels, and activities of antioxidant enzymes while increasing glutathione content in leaves. Transcriptomic analysis of roots identified 3,411, 2,730, and 581 differentially expressed genes in the control (CK) vs. Hg, CK vs. Hg + S, and Hg vs. Hg + S datasets, respectively. The pathway of S-mediated biological metabolism fell into six groups: biosynthesis and metabolism, expression regulation, transport, stimulus response, oxidation reduction, and cell wall biogenesis. The majority of biological process-related genes were upregulated under Hg stress compared with CK treatment, but downregulated in the Hg + S treatment. The results provide transcriptomic and physiological evidence that S may be critical for plant Hg stress resistance and will help to develop strategies for reduction or phytoremediation of Hg contamination.

The effect of Zostera noltei recolonization on the sediment mercury vertical profiles of a recovering coastal lagoon

Mercury's extreme toxicity and persistence in the environment justifies a thorough evaluation of its dynamics in ecosystems. Aveiro Lagoon (Portugal) was for decades subject to mercury effluent discharges. A Nature-based Solution (NbS) involving Zostera noltei re-colonization is being tested as an active ecosystem restoration measure. To study the effect of Zostera noltei on the sediment contaminant biogeochemistry, seasonal (summer/winter) sediment, interstitial water and labile mercury vertical profiles were made in vegetated (Transplanted and Natural seagrass meadows) and non-vegetated sites (Bare-bottom area). While no significant differences (p > 0.05) were observed in the sedimentary phase, Zostera noltei presence reduced the reactive/labile mercury concentrations in the top sediment layers by up to 40% when compared to non-vegetated sediment, regardless of season. No differences were found between vegetated meadows, highlighting the fast recovery of the contaminant regulation ecosystem function provided by the plants after re-colonization and its potential for the rehabilitation of historically contaminated ecosystems.

Aging rice straw reduces the bioavailability of mercury and methylmercury in paddy soil

Straw amendment is a prevalent agricultural practice worldwide, which can reduce air pollution and improve soil fertility. However, the impact of aging straw amendment on the bioavailability of mercury (Hg) and methylmercury (MeHg) in paddy soil remains unclear. To investigate this, incubation experiments were conducted using the diffusive gradient in thin-film technique. Results showed that amendments of dry-wet aging (DRS), photochemical aging (LRS), and freeze-thaw aging rice straw (FRS) reduced the bioavailable MeHg in paddy soil by 2.2-27.6%, 13.5-69.8%, and 23.5-86.1%, respectively, compared to fresh rice straw (RS) amendment. This result could be due to changes in soil properties such as soil pH and overlying water Fe and Mn as well as microbial abundance (including Clostridiaceae, Firmicutes, and Actinobacteriota). Simultaneously, The LRS and FRS amendments reduced bioavailable Hg in paddy soil by 20.0-40.8% and 17.1-48.6%, respectively, while DRS increased the bioavailable Hg by 15.8-120.0%. This could be attributed to changes in soil oxidation-reduction potential and overlying water SO42- content. Additionally, the results of sand culture experiments showed that the concentrations of Hg uptake by rice seedlings were 97.1-118.2%, 28.1-35.6%, and 198.0-217.1% higher in dissolved organic matter (DOM) derived from DRS, LRS, and FRS than RS, indicating that aging straw leached DOM may promote the Hg bioavailable when straw amendment. This result could be due to lower molecular weight and higher CO functional group content. These results provide new insight into how aging straw amendment affects the bioavailability of Hg and MeHg in paddy soil under different climates.

Kinetic characteristics of and critical stages for mercury accumulation in rice (Oryza sativa L.)

By studying the dynamic characteristics of and key growth stages for mercury (Hg) enrichment in rice, the Hg migration and translocation processes in this species can be better understood. In this study, a pot experiment was conducted, wherein two rice cultivars, Tianyouhuazhan (TYHZ, indica) and Zhendao 18 (ZD18, japonica), were selected and planted for analysing the Hg accumulation kinetic characteristics in rice plants. The plants were sampled at each growth stage, and the biomass and total Hg (THg) and methylmercury (MeHg) concentrations of each tissue were measured. The relative Hg contribution rates (CRs) in whole rice plants and rice grains were calculated, and the growth stage with the highest relative contribution was identified as the key growth stage for Hg accumulation. The results indicated that in rice, the MeHg translocation capability was stronger than the THg translocation capability. Significant differences in the kinetic characteristics of Hg accumulation were found between the two rice cultivars, and the TYHZ rice grains had a stronger Hg accumulation ability than the ZD18 rice grains. The key growth stages for THg accumulation in whole rice plants of both cultivars were the tillering and booting stages, while that for MeHg accumulation was the tillering stage. The key period for Hg accumulation in rice grains was the grain filling stage for both cultivars. The insights from this study could provide scientific guidance for the safe production of rice in Hg-contaminated soil.

Elevated methylmercury production in mercury-contaminated paddy soil resulted from the favorable dissolved organic matter variation created by algal decomposition

Algae-derived organic matter (AOM) may considerably regulate methylmercury (MeHg) production and accumulation in the paddy fields by changing the soil-dissolved OM (SDOM) properties. In this study, a 25-day microcosm experiment was performed to compare the responding mechanisms of MeHg production in the Hg-contaminated paddy soil-water system to the input of algae-, rice-, and rape-derived OMs. Results showed that algal decomposition could release much more cysteine and sulfate than crop straws. Compared with crop straw-derived OMs, AOM input greatly increased the dissolved organic carbon concentrations in soil but resulted in a greater decrease in tryptophan-like fractions while accelerated the formation of high-molecular-weight fractions in soil DOM. Moreover, AOM input significantly increased MeHg concentrations in the pore water by 19.43%-3427.66% and 52.81%-5846.57% compared to rape- and rice-derived OMs, respectively (P < 0.05). And, a similar MeHg changing pattern was also observed in the overlying water (10-25 d) and the soil solid-phase particles (15-25 d) (P < 0.05). Correlation analysis revealed that MeHg concentrations in the AOM-added soil-water system had significantly negative and positive relationships with the tryptophan-like C4 fraction and molecular weight (E2/E3 ratio) of soil DOM, respectively (P < 0.01). These findings suggest that AOM has a higher capacity than crop straw-derived OMs to promote MeHg production and accumulation in the Hg-contaminated paddy soils by creating a favorable soil DOM variation and providing more microbial electron donors and receptors.

Regulatory strategies for inhibiting horizontal gene transfer of ARGs in paddy and dryland soil through computer-based methods

Antibiotic resistance genes (ARGs) have been regarded as emerging pollutants due to their potential risk of resistance. Horizontal gene transfer (HGT) is the main pathway for ARGs to lead to environmental threats. Therefore, the inhabitation of ARGs' HGT can effectively inhibit ARGs' potential drug resistance risk within a single strain. In this paper, the characteristics of ARGs' HGT in paddy and dryland soils were identified and regulated by a combination of ARGs' HGT feature identification, transfer mechanism analysis and transfer process regulation. The homology modeling algorithm was used to simulate the construction of the Tn5 plasmid transposase of Escherichia coli (E. coli) for identifying ARGs' HGT characteristics. The GCG (212.617 Å) was thus determined as the target codon. Through integrated computer-based methods, results showed that the most important environmental disturbance factors for the HGT of ARGs in the paddy and dryland soils were rough farmyard manure/sewage irrigation and mining pollution, respectively. Under the disturbance of key environmental factors, the inhibitory effect of HGT of ARGs in paddy and dryland soil was reduced by 35.01 % and 34.74 %, respectively. Results demonstrated that the proposed theoretical mechanism and control strategies could effectively inhibit the HGT of E. coli ARGs in the soil environment.

Assessment of the Bioavailability of Mercury Sulfides in Paddy Soils Using Sodium Thiosulfate Extraction - Results from Microcosm Experiments

Mercury sulfides (HgS), one of the largest Hg sinks in the lithosphere, has long been considered to be highly inert. Recently, several HgS speciation (e.g., nano- or micro-sized HgS particles) in paddy soils have been found to be reactive and bioavailable, increasing the possibility of methylation and bioaccumulation and posing a potential risk to humans. However, a simple and uniform method for investigating HgS bioavailability is still lacking. To address this issue, we extracted dissolved Hg from HgS particles by sodium thiosulfate (Na₂S₂O₃) in paddy soils and analyzed the correlation between extracted Hg and soil methylmercury (MeHg). Results showed that the amounts of Hg extracted by Na₂S₂O₃ had a strong positive correlation with the levels of soil MeHg (R ² _adj = 0.893, p < 0.05). It is suggested that Na₂S₂O₃ extraction may be a good method of predicting Hg bioavailability in paddy soils. Our results would help to give clues in better predicting Hg risk in natural environments.

Increased water inputs fuel microbial mercury methylation in upland soils

Mercury (Hg) can be converted to neurotoxic methylmercury (MeHg) by certain microbes typically in anaerobic environments, threatening human health due to its bioaccumulation in food webs. However, it is unclear whether and how Hg can be methylated in legacy aerobic uplands with increasing water. Here, we conducted a series of incubation experiments to investigate the effects of increased water content on MeHg production in two typical upland soils (i.e., long-term and short-term use). Results showed that marked MeHg production occurred in water-saturated upland soils, which was strongly correlated with the proportions of significantly stimulated Hg methylating taxon (i.e., Geobacter). Elevated temperature further enhanced MeHg production by blooming proportions of typical Hg methylators (i.e., Clostridium, Acetonema, and Geobacter). Water saturation could also enhance microbial Hg methylation by facilitating microbial syntrophy between non-Hg methylators and Hg methylators. Taken together, the present work suggests that uplands could turn into a potential MeHg reservoir in response to water inputs resulting from rainfall or anthropogenic irrigation.

Effects of fulvic acid and humic acid from different sources on Hg methylation in soil and accumulation in rice

Humus is often used as an organic modifier to reduce the bioaccumulation of heavy metals in plants, but the effects of different humus components from different sources on the fate of mercury (Hg) in paddy fields are still unclear. Here, fulvic acid (FA) and humic acid (HA) extracted from composted straw (CS), composted cow dung (CCD), peat soil (PM) and lignite coal (LC) were used to understand their effects on the methylation and bioaccumulation of Hg in paddy soil by pot experiments. Amendments of both FA and HA largely increased the abundance of Hg-methylating microbes and low-molecular-weight organic matters (e.g, cysteine) in paddy soil. They were also found to change the aromaticity, molecular size and Chromophoric DOM concentration of DOM, and resulted in heterogeneous effects on migration and transformation of Hg. All the FA-amended treatments increased the mobility and methylation of Hg in soil and its absorption in roots. Nevertheless, FA from different sources have heterogeneous effects on transport of Hg between rice tissues. FA-CCD and FA-PM promoted the translocation of MeHg from roots to rice grains by 32.95% and 41.12%, while FA-CS and FA-LC significantly inhibited the translocation of inorganic Hg (IHg) by 52.65% and 66.06% and of MeHg by 46.65% and 36.23%, respectively. In contrast, all HA-amended treatments reduced the mobility of soil Hg, but promoted Hg methylation in soil. Among which, HA-CCD and HA-PM promoted the translocation of MeHg in rice tissues by 88.95% and 64.10%, while its accumulation in rice grains by 28.43% and 28.69%, respectively. In general, the application of some FA and HA as organic modifiers to reduce Hg bioaccumulation in rice is not feasible.

Role of the rhizosphere of a flooding-tolerant herb in promoting mercury methylation in water-level fluctuation zones

The water-level fluctuation zone (WLFZ) has been considered as a hotspot for mercury (Hg) methylation. Flooding-tolerant herbs are gradually acclimated to this water-land ecotone, tending to form substantial root systems for improving erosion resistance. Accompanying rhizosphere microzone plays crucial but unclear roles in methylmercury (MeHg) formation in the WLFZ. Thus, we conducted this study in the WLFZ of the Three Gorges Reservoir, to explore effects of the rhizosphere of a dominant flooding-tolerant herb (bermudagrass) on MeHg production. The elevated Hg and MeHg in rhizosphere soils suggest that the rhizosphere environment provides favorable conditions for Hg accumulation and methylation. The increased bioavailable Hg and microbial activity in the rhizosphere probably serve as important factors driving MeHg formation in the presence of bermudagrass. Simultaneously, the rhizosphere environments changed the richness, diversity, and distribution of hgcA-containing microorganisms. Here, a typical iron-reducing bacterium (Geobacteraceae) has been screened, however, the majority of hgcA genes detected in rhizosphere, near-, and non-rhizosphere soils of the WLFZ were unclassified. Collectively, these results provide new insights into the elevated MeHg production as related to microbial processes in the rhizosphere of perennial herbs in the WLFZ, with general implications for Hg cycling in other ecosystems with water-level fluctuations.

Sulfur-driven methylmercury production in paddies continues following soil oxidation

Methylmercury (MeHg) production in paddy soils and its accumulation in rice raise global concerns since rice consumption has been identified as an important pathway of human exposure to MeHg. Sulfur (S) amendment via fertilization has been reported to facilitate Hg methylation in paddy soils under anaerobic conditions, while the dynamic of S-amendment induced MeHg production in soils with increasing redox potential remains unclear. This critical gap hinders a comprehensive understanding of Hg biogeochemistry in rice paddy system which is characterized by the fluctuation of redox potential. Here, we conducted soil incubation experiments to explore MeHg production in slow-oxidizing paddy soils amended with different species of S and doses of sulfate. Results show that the elevated redox potential (1) increased MeHg concentrations by 10.9%-35.2%, which were mainly attributed to the re-oxidation of other S species to sulfate and thus the elevated abundance of sulfate-reducing bacteria, and (2) increased MeHg phytoavailability by up to 75% due to the reductions in acid volatile sulfide (AVS) that strongly binds MeHg in soils. Results obtained from this study call for attention to the increased MeHg production and phytoavailability in paddy soils under elevated redox potentials due to water management, which might aggravate the MeHg production induced by S fertilization and thus enhance MeHg accumulation in rice.

Roles of plant-associated microorganisms in regulating the fate of Hg in croplands: A perspective on potential pathways in maintaining sustainable agriculture

In heavy metal-contaminated croplands, plant-associated microorganisms play important roles in the adaptation of crops to heavy metals. Plant-associated microbes can interact with Hg and stimulate plant resistance to Hg toxicity, which is crucial for impeding Hg accumulation along the food chain. The roles of rhizosphere microorganisms for the improvement of plant growth and Hg resistance have drawn great research attention. However, the interactions among plant-endophyte-Hg have been neglected although they might be important for in vivo Hg detoxification. In this study, we systematically summarized 1) the roles of plant-associated microorganisms in Hg detoxification and plant growth, 2) Hg methylation and demethylation driven by plant-associated microbes, 3) the relationships between plant-associated microbes and Hg biogeochemical cycling. The possible mechanisms underlying crop-endophyte-Hg interactions were discussed, although limited studies on this aspect are available to date. The challenges and perspectives of plant-endophytes in dampening Hg phytotoxicity and controlling Hg accumulation in croplands were proposed on the basis of the present knowledge. Taken together, this work provides evidence for further understanding the interactions between soil-plant-endophyte-Hg systems and as well as new interpretations and perspectives into regulating the fate of Hg in croplands.

Source Apportionment of Speciated Mercury in Chinese Rice Grain Using a High-Resolution Model

Rice grain consumption is a primary pathway of human mercury exposure. To trace the source of rice grain mercury in China, we developed a rice paddy mercury transport and transformation model with a grid resolution of 1 km × 1 km by using the unit cell mass conservation method. The simulated total mercury (THg) and methylmercury (MeHg) concentrations in Chinese rice grain ranged from 0.08 to 243.6 and 0.03 to 238.6 μg/kg, respectively, in 2017. Approximately, 81.3% of the national average rice grain THg concentration was due to atmospheric mercury deposition. However, soil heterogeneity, especially the variation in soil mercury, led to the wide rice grain THg distribution across grids. Approximately, 64.8% of the national average rice grain MeHg concentration was due to soil mercury. In situ methylation was the main pathway via which the rice grain MeHg concentration was increased. The coupled impact of high mercury input and methylation potential led to extremely high rice grain MeHg in partial grids among Guizhou province and junctions with surrounding provinces. The spatial variation in soil organic matter significantly impacted the methylation potential among grids, especially in Northeast China. Based on the high-resolution rice grain THg concentration, we identified 0.72% of grids as heavily polluted THg grids (rice grain THg > 20 μg/kg). These grids mainly corresponded to areas in which the human activities of nonferrous metal smelting, cement clinker production, and mercury and other metal mining were conducted. Thus, we recommended measures that are targeted at the control of heavy pollution of rice grain by THg according to the pollution sources. In addition, we observed a wide spatial variation range of MeHg to THg ratios not only in China but also in other regions of the world, which highlights the potential risk of rice intake.

Impact of dissolved organic matter and environmental factors on methylmercury concentrations across aquatic ecosystems inferred from a global dataset

Mercury (Hg) input into ecosystems is estimated to have increased by twofold to fivefold since the industrial revolution. In aquatic ecosystems, methylmercury (MeHg) receives the most attentions of all the Hg species due to its neurotoxicity and strong bioaccumulation capacity in food chain. Dissolved organic matter (DOM) is crucial in impacting aquatic Hg transformation. However, only few spatially constrained studies have attempted to quantify the relative importance of DOM and other factors (e.g., Hg availability, temperature, pH, and land-use type) on MeHg concentration. In this study, we collected data of 585 water samples at 373 sites globally, including lakes, rivers, estuaries, and wetlands, and characterized the global pattern of MeHg distribution and environmental drivers of aquatic MeHg concentration. Our results showed that MeHg concentrations ranged from detection limits to 11 (geometric mean 0.11 and average 0.29) ng/L, and the highest MeHg concentration and Hg methylation potential were observed in wetlands. A positive relationship was observed between MeHg fraction in the total mercury (THg) and DOM for all the aquatic ecosystems. Using the structural equation modeling, we found that Hg availability was a dominant factor in impacting water MeHg concentration followed by DOM. According to 129 samples of specific DOM source information, we found that the percentage of THg as MeHg (%MeHg) in water dominated by the autochthonous DOM was higher than that dominated by the allochthonous DOM. Our results could advance understanding of aquatic Hg cycling and their environmental drivers, which are fundamental for predicting and mitigating MeHg productions and its potential health risks for humans.

Bioavailability and methylation of bulk mercury sulfide in paddy soils: New insights into mercury risks in rice paddies

Mercury sulfide (HgS) constitutes the largest Hg reservoir in the lithosphere but has long been considered to be not bioavailable and a minor participant in Hg biogeochemical cycling. Herein, we report that bulk α-HgS can be dissolved and methylated in paddy soils, especially with rice culture. Bulk α-HgS exposure did not affect rice growth compared to the control group but significantly increased methylmercury (MeHg) contents in the rhizospheric soils (e.g., 80.15% and 108.71% higher for bulk α-HgS treatment vs. control at the seedling and maturation stages, respectively). Moreover, bulk α-HgS exposure induced an apparent accumulation of MeHg (50% higher for bulk α-HgS treatment vs. control) and markedly elevated total Hg (THg) in rice grains. The presence of DOM and reduced sulfide in paddy soils was further evidenced to drive the mobilization and dissolution of bulk α-HgS, thereby resulting in THg and MeHg accumulation in rice grains. These findings highlight the bioavailability of HgS in rice paddies and suggest that bulk HgS should be considered when assessing Hg health risks and developing efficient remediation approaches in Hg-contaminated croplands.

The relative importance of mercury methylation and demethylation in rice paddy soil varies depending on the presence of rice plants

Neurotoxic methylmercury (MeHg) accumulates in rice grain from paddy soil, where its concentration is controlled by microbial mercury methylation and demethylation. Both up- and down-regulation of methylation is known to occur in the presence of rice plants in comparison to non-vegetated paddy soils; the influence of rice plant presence/absence on demethylation is unknown. To assess the concurrent influence of rice plant presence/absence on methylation and demethylation, and to determine which process was more dominant in controlling soil MeHg concentrations, we maintained six rhizoboxes of paddy soil with and without rice plants. At the peak of plant growth, we simultaneously measured ambient MeHg, ambient inorganic mercury (IHg), and potential rate constants of methylation and demethylation (Kmeth and Kdemeth) in soil using stable isotope tracers and ID-GC-ICPMS. We also measured organic matter content, elemental S, and water-extractable sulfate. We found MeHg concentrations were differentially controlled by MeHg production and degradation processes, depending on whether plants were present. In non-vegetated boxes, MeHg concentration was controlled by Kmeth, as evidenced by a strong and positive correlation, while Kdemeth had no relation to MeHg concentration. These results indicate methylation was the dominant driver of MeHg concentration in non-vegetated soil. In vegetated boxes, Kdemeth strongly and negatively predicted MeHg concentration, indicating that demethylation was the dominant control in soil with plants. MeHg concentration, Kmeth, and % MeHg all had significantly less variance in vegetated than in non-vegetated soils due to a consistent elimination of greater values. This pattern suggests that reduced MeHg production capacity was a secondary control on MeHg concentrations in vegetated soils. We observed no difference in the magnitude or variance of Kdemeth between treatments, suggesting that demethylation was robust to soil chemical conditions influenced by the plant, perhaps because of a wider taxonomic diversity of demethylators. Our results suggest that methylation and demethylation processes could both be leveraged to alter MeHg concentrations in rice paddy soil.

Soil aggregate-associated mercury (Hg) and organic carbon distribution and microbial community characteristics under typical farmland-use types

In order to get insight into the distribution characteristics of mercury (Hg) and organic carbon in soil aggregates, and the diversity and composition of soil microbial community under different farmland-use types (soil form three adjacent cultivation systems, i.e., corn, vegetable, and rice fields, named as CFS, VFS, and RFS), a field investigation close to Wanshan Hg mining area was conducted. Results indicated that soil total Hg (0-20 cm) presented in decreasing order of RFS (5.27 mg kg^-1) > VFS (4.32 mg kg^-1) > CFS (2.21 mg kg^-1), implying soils from rice field with higher ability of Hg accumulation. Soil aggregate-associated Hg and organic carbon enriched with the decrease of particle size under all farmland-use types, with the maximum at microaggregates (<0.053 mm). Due to the mass ratio of soil aggregates fraction, soil aggregate-associated Hg and organic carbon mainly distributed in >2 mm particles for RFS, whereas 0.25-2 mm particles for CFS and VFS. Furthermore, 16S rRNA results revealed the obvious differences in RFS and dry land soils (CFS and VFS), such as the observed species and unique OUTs, Shannon index, relative abundance at phylum and genus, which implied the diversity and composition of soil microbial community were greatly affected by farmland-use types. Spearman correlation and RDA results suggested farmland-use types, pH and total Hg were main drives for differences in soil microbial community. These findings provide evidence that farmland-use type is an important factor that affects soil total Hg accumulation, soil aggregate-associated Hg and organic carbon distribution, as well as the indigenous microbial community profiles.

Significant bioaccumulation and biotransformation of methyl mercury by organisms in rice paddy ecosystems: A potential health risk to humans

Rice has been confirmed as one of the principal intake pathways for methylmercury (MeHg) in human, however, the impact of edible organisms, such as snails, loaches and eels, living in the rice-based ecosystem to the overall MeHg intake has been overlooked. Here, we conducted a cross-sectional ecological study, and the results showed that bioaccumulation of MeHg in these edible organisms was significantly higher than in paddy soils and rice roots (p < 0.001), even though rice roots and grains have significantly higher total Hg (THg) (p < 0.001). The MeHg/THg ratios were consistently and significantly higher in those edible organisms than in rice grains, suggesting a potential elevated MeHg exposure risk through consumption. Based on results of bioaccumulation factors (BAFs) for MeHg, it was clear that MeHg was bioaccumulated and biotransformed from paddy soils to earthworms and then to eels, as well as from paddy soils to snails and then to eels and loaches, potentially indicating that the consumption of eels and loaches was absolutely pernicious to people regularly feeding on them. Overall, MeHg was biomagnified along the food chain of the paddy ecosystem from soil to the organisms, and it was of potential higher risks for local residents to eat them, especially eels and loaches. Therefore, it is intensely indispensable for people fond of such diets to attenuate their consumption of rice, eels and loaches, thus mitigating their MeHg exposure risks.

Straw return enhances the risks of metals in soil?

Interactions between organic matter (OM) and metals in soils are important natural mechanisms that can mitigate metal bioaccumulation in terrestrial environments. A primary source of OM in soils is straw return, accounting for more than 65% of OM input. Straw-OM has long been believed to reduce metal bioaccumulation, e.g., by immobilizing metals in soils. However, there is growing evidence that straw return could possibly enhance bioavailability and thus risks (i.e., food safety) of some metals in crops, including Cd, Hg, and As. Poor understanding of straw return-induced increases in metal bioavailability would add uncertainty in assessing or mitigating risks of metals in contaminated farming soils. Here, 863 pieces of literature (2000-2019) that reported the effects of straw return on metal bioavailability and bioaccumulation were reviewed. Mechanisms responsible for the increased metal mobility and bioavailability under straw return are summarized, including the effects of dissolution, complexation, and methylation. Effects of straw return on the physiology and the absorption of metals in plants is also discussed (i.e., physiological effect). These mechanisms are then used to explain the observed increases in the mobility, bioavailability, and bioaccumulation of Cd, Hg, and As under straw amendment. Information summarized in this study highlights the importance to re-consider the current straw return policy, particularly in metal-contaminated farmlands.

Mercury methylation from mercury selenide particles in soils

Selenium-inhibited monomethylmercury (MeHg) production is an attractive strategy for mitigating the risks of MeHg exposure. However, it is poorly understood the methylation potential of mercury selenide (HgSe) particles during their aging in soils and sediments. Net MeHg production in three floodplain soils amended with different geochemical species of mercury selenides, i.e., dissolved inorganic mercury freshly mixed with selenite (Hg(II)+Se(IV)), HgSe nanoparticles (45.2 ± 0.5 nm) and microparticles (> 1 μm) is examined. Among mercury types, the methylation from nanoparticulate HgSe was similar to (0.05 - 0.5 % vs. 0.1 - 0.4 %, yellow brown soil) or 12.9 - 21.0 times lower (0.02 - 0.1 vs. 0.6 - 1.5 %, black soil) than that from Hg(II)+Se(IV); however, net MeHg production from HgSe nanoparticles (0.02 - 0.5 %) was 1.9 - 15.5 times greater than HgSe microparticles (< 0.05 %) in all soils. Furthermore, net MeHg production from nanoparticulate HgSe varied significantly among soil types, attributable to differences in soil organic matter contents (2.4-5.8%) and microbial methylator community among soils. These results address the importance of geochemical intermediates of mercury selenide precipitation reactions and soil properties in MeHg production, and develop Se-based remediation strategy to minimize negative effects of MeHg on environmental and human health.

Mercury cycling in freshwater systems - An updated conceptual model

The widely accepted conceptual model of mercury (Hg) cycling in freshwater lakes (atmospheric deposition and runoff of inorganic Hg, methylation in bottom sediments and subsequent bioaccumulation and biomagnification in biota) is practically accepted as common knowledge. There is mounting evidence that the dominant processes that regulate inputs, transformations, and bioavailability of Hg in many lakes may be missing from this picture, and the fixation on the temperate stratified lake archetype is impeding our exploration of understudied, but potentially important sources of methylmercury to freshwater lakes. In this review, the importance of understudied biogeochemical processes and sites of methylmercury production are highlighted, including the complexity of redox transformations of Hg within the lake system itself, the complex assemblage of microbes found in biofilms and periphyton (two vastly understudied important sources of methylmercury in many freshwater ecosystems), and the critical role of autochthonous and allochthonous dissolved organic matter which mediates the net supply of methylmercury from the cellular to catchment scale. A conceptual model of lake Hg in contrasting lakes and catchments is presented, highlighting the importance of the autochthonous and allochthonous supply of dissolved organic matter, bioavailable inorganic mercury and methylmercury and providing a framework for future convergent research at the lab and field scales to establish more mechanistic process-based relationships within and among critical compartments that regulate methylmercury concentrations in freshwater ecosystems.

Rice root exudates enhance desorption and bioavailability of phthalic acid esters (PAEs) in soil associating with cultivar variation in PAE accumulation

Phthalic acid esters (PAEs) is a class of prevalent pollutants in agricultural soil, threating food safety through crop uptake and accumulation of PAEs. Accumulation of PAEs varies largely among crop species and cultivars. Nevertheless, how root exudates affect PAE bioavailability, dissipation, uptake and accumulation is still not well understood. In the present study, desorption and pot experiments were designed to investigate how root exudates from high-(Peizataifeng) and low-(Fengyousimiao) PAE accumulating rice cultivars affect soil PAE bioavailability, dissipation, and accumulation variation. Rice root exudates including low molecular weight organic acids (LMWOAs) of Peizataifeng and Fengyousimiao could enhance desorption of two typical PAE compounds, di-n-butyl phthalate (DBP) and di-(2-ethylhexyl) phthalate (DEHP), from aged soil to their available fractions by increasing soil dissolved organic carbon (DOC), thus improving their bioavailability in soil. Peizataifeng produced twice higher amounts of oxalic acid, critic acid and malonic acid in root exudates, and exhibited stronger effects on enhancing desorption and bioavailability of DBP and DEHP than Fengyousimiao. Higher (by about 50%) total organic carbon contents of root exudates from Peizataifeng led to higher (by 10-30%) soil microbial biomass carbon and nitrogen than Fengyousimiao, and thus promoted more PAE dissipation from soil than Fengyousimiao. Nevertheless, higher (by 20-50%) soil DOC and significantly higher PAE bioavailability in the soils planted Peizataifeng resulted in greater (by 53-93%) PAE accumulation in roots and shoots of Peizataifeng than Fengyousimiao, confirming by higher (by 1.82-3.48 folds) shoot and root bioconcentration factors of Peizataifeng than Fengyousimiao. This study reveals that the difference in root exudate extent and LMWOAs between Peizataifeng and Fengyousimiao differentiates PAE accumulation.

Mitigation of mercury accumulation in rice using rice hull-derived biochar as soil amendment: A field investigation

Effect of application of 24 t ha^-1 and 72 t ha^-1 rice hull-derived biochar (RHB) on total Hg (THg) and methylHg (MeHg) immobilization and their accumulations by rice plants were studied in a field experiment (Wanshan Hg mine, China). The addition of two doses of RHB significantly increased the biomass of rice plants, and decreased the MeHg concentration in the pore water, as compared to the control. The RHB promoted the partitioning of pore water MeHg to the soil solid phase throughout rice growing season, and pore water THg partitioning only at rice filling stage. Mercury methylation potential was weakly affected by the RHB addition to the soil. Mercury might be immobilized through binding of thiols (e.g., cysteine) presented in the RHB or in the soil induced by RHB addition. Biochar addition decreased MeHg and THg contents in the tissues of rice plants, particularly in the polished rice. We attributed the reduction of THg in the rice to the bio-dilution effect, and of MeHg content in the rice to the decreased MeHg availability in the soil by RHB addition. Results suggest that RHB might be suitable for managing Hg transfer in soil-rice plants at Hg contaminated mining regions in China and beyond.

Assembly of root-associated microbiomes of typical rice cultivars in response to lindane pollution

Organochlorine pesticides have been extensively used for many years to prevent insect diseases of rice (Oryza sativa L.), but little is known about their residual impacts on the underground micro-ecology in anaerobic environment. In this glasshouse study, we characterized the lindane effects on the assembly of root-associated microbiomes of commonly used indica, japonica and hybrid rice cultivars, and their feedback in turn, in modifying lindane anaerobic dissipation during 60 days' rice production. The results showed that rice growth inhibited the anaerobic dissipation of lindane, but was not affected apparently by lindane at initial spiked concentration of 4.62 and 18.54 mg kg^-1 soil. Suppressed removal of lindane in rice planted treatments as compared with that in unplanted control was likely due to inhibited reductive dechlorination induced by a comprehensive effect of radial O₂ secretion of rice root and co-occurring Fe(III) reduction that consumed electron competitively in rice rhizosphere. However, the hybrid cultivar exhibited a less suppression than the conventional cultivars in high polluted soils. Bacteria was more sensitively responded to lindane pollution than fungal taxa, and Actinobacteria, Chloroflexi, Verrucomicrobia and Proteobacteria were the main different phyla between hybrid and conventional cultivars, with a more stable community structure exhibited in the hybrid rice under lindane stress. Our study highlights the assembly and variation of root-associated microbiomes in responses of lindane pollution, and suggests that hybrid rice cultivar might be most competent for cultivation in paddy fields polluted by lindane and other organochlorine pesticides, especially in the area with high residual levels.

Increased Methylmercury Accumulation in Rice after Straw Amendment

Consumption of rice has been shown to be an important route of dietary exposure to methylmercury (MeHg, a neurotoxin) for Asians having a low fish but high rice diet. Therefore, factors that increase MeHg production and bioaccumulation in soil-rice systems, could enhance the risk of MeHg exposure. On the basis of a national-scale survey in China (64 sites in 12 provinces) and rice cultivation experiments, we report that straw amendment, a globally prevalent farming practice, could increase MeHg concentrations in paddy soils (11-1043%) and rice grains (95%). By carrying out a series of batch incubation, seedling uptake and sand culture experiments, we demonstrate that these increases could be attributed to (1) enhanced abundances/activities of microbial methylators and the transformation of refractory HgS to organic matter-complexed Hg, facilitating microbial Hg methylation in soils; (2) enhanced MeHg mobility, and increased root lengths (35-41%) and tip numbers (60-105%), increasing MeHg uptake by rice roots; and (3) enhanced MeHg translocation to rice grains from other tissues. Results of this study emphasize fresh organic matter-enhanced MeHg production and bioaccumulation, and highlight the increased risk of MeHg after straw amendment and thus the need for new policies concerning straw management.

Mercury-Organic Matter Interactions in Soils and Sediments: Angel or Devil?

Many studies have suggested that organic matter (OM) substantially reduces the bioavailability and risks of mercury (Hg) in soils and sediments; however, recent reports have supported that OM greatly accelerates Hg methylation and increases the risks of Hg exposure. This study aims to summarize the interactions between Hg and OM in soils and sediments and improve our understanding of the effects of OM on Hg methylation. The results show that OM characteristics, promotion of the activity of Hg-methylating microbial communities, and the microbial availability of Hg accounted for the acceleration of Hg methylation which increases the risk of Hg exposure. These three key aspects were driven by multiple factors, including the types and content of OM, Hg speciation, desorption and dissolution kinetics and environmental conditions.

Effects of Farming Activities on the Biogeochemistry of Mercury in Rice-Paddy Soil Systems

The biogeochemistry of mercury (Hg) in rice-paddy soil systems raises concerns, given that (1) the redox potential in paddy soil favors Hg methylation and (2) rice plants have a strong ability to accumulate methylmercury (MeHg), making rice an important source for MeHg exposure to humans. Therefore, all factors affecting the behavior of Hg in rice-paddy soils might impact Hg accumulation in rice, with its subsequent potential risks. As a typical wetland, paddy soils are managed by humans and affected by anthropogenic activities, such as agronomic measures, which would impact soil properties and thus Hg biogeochemistry. In this paper, we reviewed recent advances in the effects of farming activities including water management, fertilizer application and rotation on Hg biogeochemistry, trying to elucidate the factors controlling Hg behavior and thus the ecological risks in rice-paddy soil systems. This review might provide new thoughts on Hg remediation and suggest avenues for further studies.

Spectral insight into thiosulfate-induced mercury speciation transformation in a historically polluted soil

We studied the effect of different doses (0.5%, 2% and 5% (w/w)) of ammonium thiosulfate on mercury (Hg) speciation fractionation following its addition to the soil, as well as its accumulation by oilseed rape (Brassica napus L.), corn (Zea mays L.), and sweet potato (Ipomoea batatas L.), and compared them to a non-treated control in a historically polluted soil. The oilseed rape, corn, and sweet potato were planted consecutively in the same soils on days 30, 191, and 276, respectively after the addition of thiosulfate to the soil. The key results showed that bioavailable Hg contents in the rhizosphere soils ranged from 0.18 to 2.54 μg kg^-1, 0.28 to 2.77 μg kg^-1, and 0.24 to 2.22 μg kg^-1, respectively, for the 0.5%, 2% and 5% thiosulfate treatments, which were close to the control soil (0.25 to 1.98 μg kg^-1). The Hg L₃-edge X-ray absorption near edge structure (XANES) results showed a tendency of the Hg speciation to transform from the Hg(SR)₂ (initial soil, 56%; day-191 soil, 43%; day-276 soil, 46%, and day-356 soil, 16%) to nano particulated HgS (initial soil, 26%; day-191 soil, 42%; day-276 soil, 42%, and day-356 soil, 73%) with time in the soil treated with a 5% dose of thiosulfate. The Hg contents in the tissues of the crops, except for oilseed rape, were slightly affected by the addition of thiosulfate to the soil at all dosages, compared to the control. The addition of thiosulfate did not induce the movement of bioavailable Hg to the lower layer of the soil profile. We conclude a promotion of Hg immobilization by thiosulfate in the soil for over one year, offering a promising method for in-situ Hg remediation at Hg mining regions in China.