The breakdown of protein hydrogen bonding networks facilitates biotransformation of protein wastewaters during anaerobic digestion methanogenesis: Focus on protein structure and conformation

Covalent conjugation with dietary flavonoids Rutin and Isoschaftoside ameliorates intestinal barrier dysfunction and inflammation induced by Peanut allergy protein Arah 3 and enhances their antioxidant properties

Food allergies, particularly those caused by peanut allergens e.g. Arah 3, are a significant health concern. This study aimed to screen flavonoids with high affinity to Arah 3 by molecular docking, and to evaluate the effects of the Arah 3-flavonoid conjugates on intestinal barrier permeability and inflammation using cell models, and on their antioxidant activities by chemical assays. Computer simulation showed that rutin and isoschaftoside had better affinity and stability with Arah 3. Characterization results exhibited that conjugates were formed by covalent bonding and protein folding reduced significantly. Arah 3-induced intestinal barrier dysfunction was significantly improved after binding with rutin and isoschaftoside. The levels of IL-6, IL-8 and MCP-1 decreased by about 15.61 %, 17.94 % (11.23 %) and 16.17 %, respectively, after conjugation with isoschaftoside (rutin). The antioxidant capacities of two conjugates were significantly enhanced. This study may provide new insights into the effects of flavonoids on the adverse effects of Arah 3.

Advancing sustainable agriculture through multi-omics profiling of biosolids for safe application: A review

Biosolids, derived from wastewater treatment processes, are valuable resources for soil amendment in agriculture due to their nutrient-rich composition. However, various contaminants of concern (CEC) such as pharmaceuticals, per-and poly-fluoroalkyl substances, endocrine disruptive chemicals, surfactants, pathogens, nanoplastics, and microplastics, are also reported in biosolids. The use of biosolids for agriculture may introduce these CEC into the soil, which raises concerns about their environmental and human health impacts. Moreover, the presence of pathogens (Escherichia coli, Salmonella sp., Shigella, Giardia, Rotavirus, etc.) even after treatment calls for microbial profiling of biosolids, especially in developing countries. Multi-omics approaches can be used as powerful tools for characterizing microbial communities and highlighting metabolic pathways. Moreover, these approaches also help in predicting the ecological and agronomic effects of biosolids application in agricultural soils. This review discusses the advantages and challenges of using biosolids in agriculture, considering the range of different CEC reported in biosolids. Moreover, the current legislation for the use of biosolids in agriculture is also presented, highlighting the limitations with respect to guidelines for emerging contaminants in biosolids. Furthermore, the role of the multi-omics approach in biosolids management, focusing on genomics, transcriptomics, proteomics, and metabolomics is also assessed. Multi-omics also allows for real-time monitoring, ensuring continuous optimization of biosolids towards changing environmental conditions. This dynamic approach not only enhances the safe use, but also enhances the sustainability of waste management practices, minimizing the negative effects. Finally, the future research directions for integrating the multi-omics approach into biosolid management practices are also suggested. The need for updating the legislative framework, continued innovation to promote sustainable and robust agricultural systems, bringing the process closer to the principles of a circular bioeconomy is also empahasized.

Probing the binding mode and interactions of proteinase K and glutathione: molecular simulation and experiments

Proteinase K, a serine protease from Tritirachium album Limber, is crucial in research due to its potent proteolytic activity, which relies on conformational stability and substrate affinity. Glutathione (GSH), an essential intracellular antioxidant, regulates various physiological processes by interacting with proteins, influencing their stability and function. Despite the importance of both proteinase K and GSH, their potential interaction remains unexplored. Understanding this interaction could uncover new regulatory mechanisms affecting proteinase K, with significant implications for research and therapeutic applications. In this study, we systematically investigated the binding of GSH to proteinase K using a comprehensive approach in which theoretical and experimental methods mutually validate each other. Molecular docking determined the binding mode and the interaction mechanism of proteinase K and GSH. Molecular dynamics (MD) simulations revealed that GSH binding significantly improved the stability of proteinase K, affirming the binding process was spontaneous, with hydrogen bonds and van der Waals forces emerging as the predominant contributors throughout the interaction. At the same time, the fluorescence spectrum and circular dichroism spectrum confirmed the interaction mechanism between GSH and proteinase K, as well as the conformational changes of proteinase K induced by GSH binding. We believe this study could offer valuable insights for future research into the structure and binding dynamics of other protein-ligand complexes under physiological conditions.

Insights into carbon-neutral treatment of rural wastewater by constructed wetlands: A review of current development and future direction

In recent years, with the global rise in awareness regarding carbon neutrality, the treatment of wastewater in rural areas is increasingly oriented towards energy conservation, emission reduction, low-carbon output, and resource utilization. This paper provides an analysis of the advantages and disadvantages of the current low-carbon treatment process of low-carbon treatment for rural wastewater. Constructed wetlands (CWs) are increasingly being considered as a viable option for treating wastewater in rural regions. In pursuit of carbon neutrality, advanced carbon-neutral bioprocesses are regarded as the prospective trajectory for achieving carbon-neutral treatment of rural wastewater. The incorporation of CWs with emerging biotechnologies such as sulfur-based autotrophic denitrification (SAD), pyrite-based autotrophic denitrification (PAD), and anaerobic ammonia oxidation (anammox) enables efficient removal of nitrogen and phosphorus from rural wastewater. The advancement of CWs towards improved removal of organic and inorganic pollutants, sustainability, minimal energy consumption, and low carbon emissions is widely recognized as a viable low-carbon approach for achieving carbon-neutral treatment of rural wastewater. This study offers novel perspectives on the sustainable development of wastewater treatment in rural areas within the framework of achieving carbon neutrality in the future.

Anaerobic degradation of excess protein-rich fish feed drives CH4 ebullition in a freshwater aquaculture pond

Aquaculture is a climate-relevant source of greenhouse gases like methane. Methane emissions depend on various parameters, with organic matter playing a crucial role. Nevertheless, little is known about the composition of organic matter in aquaculture. We investigated the effects of excessive loading of high-protein fish feed on the quality of sediment organic matter in a fishpond to explain extremely high methane ebullition rates (bubble flux). Analysing the molecular composition of water-extractable organic matter using liquid chromatography Fourier-transform ion cyclotron resonance mass spectroscopy, we found strong differences between the feeding area and open water area: low-molecular weight nitrogen and sulphur-rich organic compounds were highly enriched at the feeding area. In addition, methane ebullition correlated well with sediment protein content and total bound nitrogen in pore water. Our results indicate that feed proteins in the sediments are hydrolysed into oligopeptides (CHNO) and subsequently converted to CHOS and CHNOS components during anaerobic deamination of protein and peptide fragments in the presence of inorganic sulphides. These metabolites accumulate at the feeding area due to continuous feed supply. Our findings illustrate the adverse effects of excessive feeding leading to bioreactor-like methane emissions at the feeding area. Improving feed management has the potential to make aquaculture more climate-friendly.

Impact of co-substrate molecular weight on methane production potential, microbial community dynamics, and metabolic pathways in waste activated sludge anaerobic co-digestion

Proteins and carbohydrates are important organics in waste activated sludge, and greatly affect methane production and microbial community composition in anaerobic digestion systems. Here, a series of co-substrates with different molecular weight were applied to investigate the interactions between microbial dynamics and the molecular weight of co-substrates. Biochemical methane production assays conducted in batch co-digesters showed that feeding high molecular weight protein and carbohydrate substrates resulted in higher methane yield and production rates. Moreover, high-molecular weight co-substrates increased the microbial diversity, enriched specific microbes including Longilinea, Anaerolineaceae, Syner-01, Methanothrix, promoted acidogenic and acetoclastic methanogenic pathways. Low-molecular weight co-substrates favored the growth of JGI-0000079-D21, Armatimonadota, Methanosarcina, Methanolinea, and improved hydrogenotrophic methanogenic pathway. Besides, Methanoregulaceae and Methanolinea were indicators of methane yield. This study firstly revealed the complex interactions between co-substrate molecular weight and microbial communities, and demonstrated the feasibility of adjusting co-substrate molecular weight to improve methane production process.

Insights into current bio-processes and future perspectives of carbon-neutral treatment of industrial organic wastewater: A critical review

With the rise of the concept of carbon neutrality, the current wastewater treatment process of industrial organic wastewater is moving towards the goal of energy conservation and carbon emission reduction. The advantages of anaerobic digestion (AD) processes in industrial organic wastewater treatment for bio-energy recovery, which is in line with the concept of carbon neutrality. This study summarized the significance and advantages of the state-of-the-art AD processes were reviewed in detail. The application of expanded granular sludge bed (EGSB) reactors and anaerobic membrane bioreactor (AnMBR) were particularly introduced for the effective treatment of industrial organic wastewater treatment due to its remarkable prospect of engineering application for the high-strength wastewater. This study also looks forward to the optimization of the AD processes through the enhancement strategies of micro-aeration pretreatment, acidic-alkaline pretreatment, co-digestion, and biochar addition to improve the stability of the AD system and energy recovery from of industrial organic wastewater. The integration of anaerobic ammonia oxidation (Anammox) with the AD processes for the post-treatment of nitrogenous pollutants for the industrial organic wastewater is also introduced as a feasible carbon-neutral process. The combination of AnMBR and Anammox is highly recommended as a promising carbon-neutral process for the removal of both organic and inorganic pollutants from the industrial organic wastewater for future perspective. It is also suggested that the AD processes combined with biological hydrogen production, microalgae culture, bioelectrochemical technology and other bio-processes are suitable for the low-carbon treatment of industrial organic wastewater with the concept of carbon neutrality in future.

Modified porous starch for enhanced properties: Synthesis, characterization and applications

Native starches have low water solubility at room temperature and poor stability, which demand modifications to overcome. Porous starch as a modified one shows enhanced adsorptive efficiency and solubility compared with its native starch. In contrast, some inherent disadvantages exist, such as weak mechanical strength and low thermal resistance. Fortunately, modified porous starches have been developed to perform well in adsorption capacity and stability. Modified porous starch can be prepared by esterification, crosslinking, oxidation and multiple modifications to the porous starch. The characterization of modified porous starch can be achieved through various analytical techniques. Modified porous starch can be utilized as highly efficient adsorbents and encapsulants for various compounds and applied in various fields. This review dealt with the progress in the preparation, structural characterization and application of modified porous starch. The objective is to provide a reference for its development, utilization, and future research directions.

Comprehensive insights into the impact of pretreatment on anaerobic digestion of waste active sludge from perspectives of organic matter composition, thermodynamics, and multi-omics

Although various pretreatments have been applied to promote the anaerobic digestion of waste active sludge (WAS), the mechanisms regarding the impact of pretreatment on anaerobic digestion have not been well addressed. In this study, the effects of acid, alkali, and thermal pretreatments on anaerobic digestion of WAS were comprehensively investigated from the perspectives of organic matter composition, thermodynamics, and multi-omics. Results showed acid, alkali, and thermal pretreatments increased the methane production potential of WAS by 53.7%, 98.2%, and 101.8%, respectively, compared with the control. The protein secondary structure was disrupted after pretreatment, with a shift from α-helix and β-sheet to random coil and antiparallel β-sheet/aggregated strands. Thermodynamically, the WAS flocculation process was controlled by the short-range interfacial interactions described by the extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) theory, which was positively correlated (R = 0.97, p < 0.05) with the organic matter solubilization of the WAS. After pretreatment, the flocculation energy barrier of pretreated WAS was 4.1 (acid), 7.0 (alkali) and 7.1 (thermal) times higher than that of the control group, respectively. Multi-omics analysis confirmed that pretreatment promoted amino acids (tryptophan, tyrosine, phenylalanine, aspartate, glutamate) metabolism, energy metabolism (ABC transporters) and vitamin metabolism. Moreover, the comparison of upregulated differentially expressed proteins (DEPs) revealed that for amino acid metabolism, thermal treatment had the best promotion effect; for carbohydrate metabolism, alkali treatment had the best promotion effect; and for lipid metabolism, acid treatment was more advantageous, resulting in different anaerobic digestion efficiencies. This study provides an in-depth understanding of the impact of different pretreatments on WAS anaerobic digestion and has practical implication for the choice of proper pretreatment technology for biosolids.

Enhanced dewaterability of lake dredged sediments by electrochemical oxidation of peroxydisulfate on BDD anode

Dredged sediments, as a product of mitigating endogenous pollution of rivers and lakes, cause severe environmental pollution without suitable disposal. To reduce dredged sediments, the electrochemical oxidation (EO) of peroxydisulfate (PS) on a boron-doped diamond (BDD) anode (EO/BDD-PS) was utilized to enhance the dewaterability of the dredged sediments. The soluble chemical oxygen demand increased in the EO/BDD-PS system, and more than 70.0% of the specific resistance to filtration was reduced by EO/BDD-PS within 20 min. The optimal conditions were determined to be as follows: current density, 30 mA cm^-2; PS dosage 4 g L^-1; and initial pH, 6.96. After treatment with EO/BDD-PS, the electronegativity of the sludge flocs was alleviated and the particle size increased from 7.61 to 10.64 μm. Furthermore, proteins and polysaccharides were degraded, and tightly bound extracellular polymeric substances (TB-EPS) and loosely bound EPS (LB-EPS) were effectively transported to soluble EPS (S-EPS). Furthermore, humification of organic matter occurred in S-EPS and LB-EPS when the dredged sediment was treated with EO/BDD-PS. Dominant hydroxyl radicals (•OH) and sulfate radicals (SO₄•^-) were generated in the EO/BDD-PS system. Moreover, the efficiency of the filtrate as an electrolyte decreased slightly after recycling five times. Therefore, this method may be economical for enhancing the dewaterability of dredged sediments.