Spatial and temporal effects of fish feed on antibiotic resistance in coastal aquaculture farms

Impact of typhoon on nutrient contaminants, antibiotic resistance genes and microbial communities in mariculture tailwater treatment system

Intensive marine aquaculture generates complex pollutants, including nutrients and, threatening marine ecosystems. Biological treatments are effective but vulnerable to disruptions, especially during typhoons, which alter water quality and microbial communities. This study examined a mariculture tailwater (MTW) treatment system in Hainan over a year, focusing on seasonal performance in nutrient and ARGs removal, microbial community dynamics, impacts of environmental changes on functional microorganisms, and interactions of hosts of antibiotic resistance genes. The system effectively removed NH4+-N (63.74-94.73%) during non-typhoon seasons, but typhoons disrupted its nutrient pollutant reduction performance. The proportion of microorganisms involved in nitrogen and phosphorus removal decreased by changes of salinity in typhoon events. Antibiotic resistance genes relative abundances were enriched due to typhoon disaster. The majority antibiotic resistance genes in the system were associated with beta-lactam resistance (4.37 × 104-8.73 × 104). Rare bacterial taxa showed the strongest tolerance in all taxa to typhoon conditions. Archaeal community compositions were sensitive to these disturbances. Disperal limitation and heterogeneous selection were key drivers in bacterial and archaeal community assemblies. Microorganisms and antibiotic resistance genes often co-occurred in non-typhoon seasons. Vibrio was identified as a key potential host of antibiotic resistance genes in both seasons. This study highlights the disruptive effect of typhoons on the stability of MTW treatment systems.

Sustainable aquaculture and seafood production using microalgal technology - A circular bioeconomy perspective

The aquaculture industry is under the framework of the food-water-energy nexus due to the extensive use of water and energy. Sustainable practices are required to support the tremendous growth of this sector. Currently, the aquaculture industry is challenged by its reliance on capture fisheries for feed, increased use of pharmaceuticals, infectious outbreaks, and solid/liquid waste management. This review posits microalgal technology as a comprehensive solution for the current predicaments in aquaculture in a sustainable way. Microalgae are microscopic, freshwater and marine photosynthetic organisms, capable of carbon mitigation and bioremediation. They are indispensable in aquaculture due to their key role in marine productivity and their position in the marine food chain. Microalgae are nutritious and are currently used as feed in specific sectors of aquaculture. Due to their bioremediation potential, direct application of microalgae in shellfish ponds and in recirculating systems have been adopted to improve water quality and aquatic animal health. The potential of microalgae for integration into various aspects of aquaculture processes, namely hatcheries, feed, and waste management has been critically analyzed. Seamless integration of microalgal technology in aquaculture is feasible, and this review will provide new insights into using microalgal technology for sustainable aquaculture.

Antimicrobial Resistance in Aquaculture: Risk Mitigation within the One Health Context

The application of antimicrobials in aquaculture primarily aims to prevent and treat bacterial infections in fish, but their inappropriate use may result in the emergence of zoonotic antibiotic-resistant bacteria and the subsequent transmission of resistant strains to humans via food consumption. The aquatic environment serves as a potential reservoir for resistant bacteria, providing an ideal breeding ground for development of antimicrobial resistance (AMR). The mutual inter-connection of intensive fish-farming systems with terrestrial environments, the food processing industry and human population creates pathways for the transmission of resistant bacteria, exacerbating the problem further. The aim of this study was to provide an overview of the most effective and available risk mitigation strategies to tackle AMR in aquaculture, based on the One Health (OH) concept. The stringent antimicrobial use guidelines, promoting disease control methods like enhanced farm biosecurity measures and vaccinations, alternatives to antibiotics (ABs) (prebiotics, probiotics, immunostimulants, essential oils (EOs), peptides and phage therapy), feeding practices, genetics, monitoring water quality, and improving wastewater treatment, rather than applying excessive use of antimicrobials, can effectively prevent the development of AMR and release of resistant bacteria into the environment and food. The contribution of the environment to AMR development traditionally receives less attention, and, therefore, environmental aspects should be included more prominently in OH efforts to predict, detect and prevent the risks to health. This is of particular importance for low and middle-income countries with a lack of integration of the national AMR action plans (NAPs) with the aquaculture-producing environment. Integrated control of AMR in fisheries based on the OH approach can contribute to substantial decrease in resistance, and such is the case in Asia, where in aquaculture, the percentage of antimicrobial compounds with resistance exceeding 50% (P50) decreased from 52% to 22% within the period of the previous two decades.

Distribution characteristics of antibiotic resistance genes and microbial diversity in the inshore aquaculture area of Wenchang, Hainan, China

The rapid development of marine aquaculture has led to the increased use and release of antibiotics into the marine environment, consequently contributing to the emergence of antibiotic resistance. Information on antibiotic resistance in nearshore marine aquaculture areas remains limited, and research on the microbial composition and potential hosts of antibiotic resistance genes (ARGs) in marine aquaculture areas is scarce. This study used SmartChip real-time fluorescent quantitative PCR and qPCR to quantitatively analyze 44 ARGs and 10 mobile genetic elements (MGEs) genes in 12 sampling points in the nearshore aquaculture area of Wenchang. High-throughput sequencing of 16S rRNA was used to study microbial diversity in the study area, to clarify the correlation between ARGs, MGEs, and microbial diversity, and to determine the possible sources and potential hosts of ARGs. The results showed that a total of 37 ARGs and 8 MGEs were detected in the study area. The detection rate of 9 ARGs (aac(6')-Ib(aka aacA4)-02, catA1, cmlA, cfr, sul1, sul2, sulA/folP-01, tetC, tetX) was 100 %. The absolute abundance of ARGs in the 12 sampling points ranged from 2.75 × 107 to 3.79 × 1010 copies·L-1, and the absolute abundance of MGEs was 1.30 × 105 to 2.54 × 107 copies·L-1, which was relatively high compared to other research areas. ARGs and MGEs were significantly correlated, indicating that MGEs play an important role as a mediator in the spread of ARGs. At the phylum level, Proteobacteria and Cyanobacteria were the dominant bacteria in the study area, with HIMB11 and unidentifiedChloroplast being the dominant levels, respectively. Network analysis of ARGs and microorganisms (genus level) revealed that Cognatishimia, Thalassobius, Aestuariicoccus, Thalassotalea, and Vibrio were significantly correlated with multiple ARGs and were the main potential hosts of ARGs in the nearshore waters of Wenchang.

Unraveling antibiotic resistomes associated with bacterial and viral communities in intertidal mudflat aquaculture area

The extensive use of antibiotics in intertidal mudflat aquaculture area has substantially increased the dissemination risk of antibiotic resistance genes (ARGs). As hosts of ARGs, bacteria and virus exert vital effects on ARG dissemination. However, the insights for the interrelationships among ARGs, bacteria, and virus have not been thoroughly explored in intertidal mudflat. Therefore, this study attempts to unravel the occurrence, dissemination, evolution, and driving mechanisms of ARGs associated with bacterial and viral communities using metagenomic sequencing in a typical intertidal mudflat. Abundant and diverse ARGs (22 types and 437 subtypes) were identified and those of ARGs were higher in spring than in autumn. It is worthy noted that virus occupied a more essential position than bacteria for ARGs dissemination through network analysis. Meanwhile, nitrogen exerted indirect effect on ARG profiles by shaping viral and bacterial diversity. According to the results of neutral and null models, deterministic processes dominated the ARG community assembly by controlling sediment nitrogen and antibiotics. Homogeneous and variable selection dominated phylogenetic turnover of ARG community, contributing 46.15% and 45.90% of the total processes, respectively. This study can hence theoretically support for the ARG pollution control and management in intertidal mudflat aquaculture area.