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Petcharoen P, Nolan M, Kirkbride KP, Linacre A. Shedding more light on shedders. Forensic Sci Int Genet 2024; 72:103065. [PMID: 38851033 DOI: 10.1016/j.fsigen.2024.103065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 04/15/2024] [Accepted: 05/26/2024] [Indexed: 06/10/2024]
Abstract
We report on testing 100 individuals for their shedder status with the aim of demonstrating whether the process of cell staining is reproducible when testing a large number of people. A previous report using the same method was based on 11 donors and indicated that there may be a continuum of shedder types within this small sample set. In this report we also expand the time points post-handwashing to 0, 15, 30, 60, and 180 min. Triplicate samples were collected from both the right and left thumbs. Samples were collected by donors placing a thumb on a clean glass slide and then adding a DNA binding dye. The number of cells were recorded within three separate square millimetre areas (cells/mm2) at 220x magnification. The experiments were conducted in triplicate on three different days, giving a total of 72 thumbprints per individual. Finally, there were 3438 observed frames in the entire dataset. Of the 100 donors, 98 gave consistent and reproducible cell number deposition. There was no difference between the cells deposited by the left and right thumbs in 13 of 15 tested. Males tended to deposit more cells than females. If applying arbitrary boundary to a cell count to definitively determine shedder status, then many of the donors fell within two categories. This study based on 100 individuals strongly suggests that shedder status is a continuum phenomenon.
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Affiliation(s)
- Piyamas Petcharoen
- School of Biology, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
| | - Madison Nolan
- College of Science & Engineering, Flinders University, Adelaide 5042, Australia
| | - K Paul Kirkbride
- College of Science & Engineering, Flinders University, Adelaide 5042, Australia
| | - Adrian Linacre
- College of Science & Engineering, Flinders University, Adelaide 5042, Australia.
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2
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Stefanović A, Šorgić D, Cvetković N, Antović A, Ilić G. Precision touch DNA sampling on plastic bag knots for improved profiling of packer and holder contributions. Forensic Sci Int Genet 2024; 71:103033. [PMID: 38522394 DOI: 10.1016/j.fsigen.2024.103033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/14/2024] [Accepted: 03/15/2024] [Indexed: 03/26/2024]
Abstract
In forensic DNA analysis, evidence sampling stands as a pivotal step setting the ground for the quality of the forensic profiling. The collection of touch DNA from objects, when guidelines are scarce or absent, is usually governed by ad hoc decisions based on the available case circumstances. In our laboratory, in the context of illicit drug-related crimes, similar objects are frequently encountered, offering an opportunity for the standardization of evidence treatment. This study aims to develop an effective method for sampling touch DNA from knots on plastic bags. We examine both the exposed and hidden areas of knots, considering the latter as "protected" zones less likely to accumulate biological material during subsequent handling. The study contrasts a single sample method (whole knot surface sampling, Method 1) with dual-sample methods that separate exterior (exposed) and interior (hidden) surfaces of the knot. Notably, our study consistently reveals higher DNA yields from exterior surfaces of the knots as opposed to interior samples. Importantly, our findings demonstrate that utilizing a single sample may produce DNA profiles that are not interpretable, while employing a dual-sample approach may allow for the differentiation between the genetic contributions of the person who tied the knot, the packer, from the person who held the package, the holder. We have refined the dual-sample method to reduce holder DNA in the interior sample while maintaining it on the exterior, also allowing the packer's DNA to be detected on both surfaces. We explore four dual-sample collection methods. Method 2 involves taking the first sample from the exterior and the second from the interior of an untied knot. Method 3 visually differentiates between the original exposed and hidden surfaces for precise sampling. Method 4 employs tools to open the knot for interior sampling. Method 5 uses Diamond dye to highlight cell-free DNA on both surfaces before sampling. In conclusion, this study not only clarifies the complex dynamics of touch DNA transfer and collection on plastic bag knots, but also offers insights into standardizing evidence collection in similar cases.
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Affiliation(s)
| | - Dejan Šorgić
- Institute of Legal Medicine, Bulevar Dr. Zorana Đinđića 81, Niš 18000, Serbia
| | - Nataša Cvetković
- Institute of Legal Medicine, Bulevar Dr. Zorana Đinđića 81, Niš 18000, Serbia
| | - Aleksandra Antović
- Institute of Legal Medicine, Bulevar Dr. Zorana Đinđića 81, Niš 18000, Serbia
| | - Goran Ilić
- Institute of Legal Medicine, Bulevar Dr. Zorana Đinđića 81, Niš 18000, Serbia
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3
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Madden I, Taylor D, Mitchell N, Goray M, Henry J. Predicting probative levels of touch DNA on tapelifts using Diamond™ Nucleic Acid Dye. Forensic Sci Int Genet 2024; 70:103024. [PMID: 38335775 DOI: 10.1016/j.fsigen.2024.103024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 01/29/2024] [Accepted: 02/02/2024] [Indexed: 02/12/2024]
Abstract
Tapelifting is a common strategy to recover touch DNA deposits from porous exhibits in forensic DNA casework. However, it is known that only about 30 % of tapelifts submitted for DNA analysis in operational forensic laboratories yield profiles suitable for comparison or upload to a searchable database. A reliable means to identify and remove non-probative tapelifts from the workflow would reduce sample backlogs and provide significant cost savings. We investigated whether the amount of macroscopic or microscopic fluorescence on a tapelift following staining with Diamond Nucleic Acid Dye (DD), determined using a Polilight and Dino Lite microscope respectively, could predict the DNA yield and/or the DNA profiling outcome using controlled (saliva), semi-controlled (finger mark) and uncontrolled (clothing) samples. Both macroscopic and microscopic DD fluorescence could predict DNA yield and profiling outcome for all sample types, however the predictive power deteriorated as the samples became less controlled. For tapelifts of clothing, which are operationally relevant, Polilight fluorescence scores were significantly impacted by clothing fibres and other non-cellular debris and could not be used to identify non-probative samples. The presence of less than 500 cells on a clothing tapelift using microscopic counting of stained corneocytes was identified as a potential threshold for a non-probative DNA profiling outcome. A broader examination of the reliability of this threshold using a casework trial is recommended. Due to the labour intensiveness of microscopic cell counting, and the increased risk of inadvertent contamination, automation of this process using image software in conjunction with artificial neural networks (ANN) should be explored.
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Affiliation(s)
- Isla Madden
- College of Science and Engineering, Flinders University of South Australia, Bedford Park, South Australia 5042, Australia
| | - Duncan Taylor
- College of Science and Engineering, Flinders University of South Australia, Bedford Park, South Australia 5042, Australia; Forensic Science SA, GPO Box 2790, Adelaide, South Australia 5001, Australia
| | - Natasha Mitchell
- Forensic Science SA, GPO Box 2790, Adelaide, South Australia 5001, Australia
| | - Mariya Goray
- College of Science and Engineering, Flinders University of South Australia, Bedford Park, South Australia 5042, Australia
| | - Julianne Henry
- College of Science and Engineering, Flinders University of South Australia, Bedford Park, South Australia 5042, Australia; Forensic Science SA, GPO Box 2790, Adelaide, South Australia 5001, Australia.
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4
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Chan AHJ, Gardner MG, Linacre A. Visualisation and detection of latent DNA deposited by pangolin scales onto plastic packaging materials. Forensic Sci Int Genet 2024; 68:102975. [PMID: 37984157 DOI: 10.1016/j.fsigen.2023.102975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 10/27/2023] [Accepted: 11/04/2023] [Indexed: 11/22/2023]
Abstract
We report on the detection and visualisation of latent DNA from pangolin scales deposited onto a plastic packaging material through the use of a nucleic acid staining dye. This latent DNA deposited by pangolin scales was subsequently isolated and analysed using DNA barcoding method. Pangolins are the most illegally traded mammalian species due to the demand for their scales and meat. The demand for their scales were mostly fuelled by its use in traditional medicines. The scales are usually packed into bags and transported globally via sea routes. This is the first report detailing the detection of trace latent DNA from processed wildlife products, on surfaces of bags that they were packaged in. Prior to this report, it was not known if the dried pangolin scales contained transferable quantities of biological material for DNA analyses. To address this, scales were removed from a roadkill Sunda pangolin (Manis javanica), processed by drying and packaged into one of five plastic bags. The presence of pangolin latent DNA was detected on the surface of the plastic bags and visualised using Diamond™ nucleic acid dye. Swabs were then used to recover the stained biological material from various locations in the five bags. The DNA was isolated and quantified using a newly designed quantitative PCR (qPCR) specific to M. javanica to amplify a fragment of the mitochondrial DNA cytochrome b gene. There was a positive correlation between the number of stained particles and DNA quantity, and a greater number of stained particles were found at the bottom of the bag than were found at the top. Conventional PCR targeting part of the cyt b gene amplified a product from all 30 samples taken from the bags and in all cases, sequence data generated matched that of the Sunda pangolin, as expected. All negative controls yielded no results. The method described here is the very first use of a nucleic acid staining dye to detect latent DNA from a mammalian species, other than humans, and highlights the opportunity for further use of Diamond™ nucleic acid dye in wildlife forensic science. It is anticipated that this method will be invaluable in retrieving latent DNA deposited by wildlife products from the environment in which they were contained, to determine the presence of these illegal wildlife products even when previously hidden, inaccessible, or no longer present physically. Further research is required to understand if the use on non-human mammalian wildlife species is feasible.
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Affiliation(s)
- Amy H J Chan
- College of Science and Engineering, Flinders University, Adelaide, Australia; Centre of Wildlife Forensics, National Parks Board of Singapore, Singapore.
| | - Michael G Gardner
- College of Science and Engineering, Flinders University, Adelaide, Australia; Evolutionary Biology Unit, South Australian Museum, Adelaide, Australia
| | - Adrian Linacre
- College of Science and Engineering, Flinders University, Adelaide, Australia
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5
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Fantinato C, Fonneløp AE, Bleka Ø, Vigeland MD, Gill P. The invisible witness: air and dust as DNA evidence of human occupancy in indoor premises. Sci Rep 2023; 13:19059. [PMID: 37925517 PMCID: PMC10625553 DOI: 10.1038/s41598-023-46151-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 10/28/2023] [Indexed: 11/06/2023] Open
Abstract
Humans constantly shed deoxyribonucleic acid (DNA) into the surrounding environment. This DNA may either remain suspended in the air or it settles onto surfaces as indoor dust. In this study, we explored the potential use of human DNA recovered from air and dust to investigate crimes where there are no visible traces available-for example, from a recently vacated drugs factory where multiple workers had been present. Samples were collected from three indoor locations (offices, meeting rooms and laboratories) characterized by different occupancy types and cleaning regimes. The resultant DNA profiles were compared with the reference profiles of 55 occupants of the premises. Our findings showed that indoor dust samples are rich sources of DNA and provide an historical record of occupants within the specific locality of collection. Detectable levels of DNA were also observed in air and dust samples from ultra-clean forensic laboratories which can potentially contaminate casework samples. We provide a Bayesian statistical model to estimate the minimum number of dust samples needed to detect all inhabitants of a location. The results of this study suggest that air and dust could become novel sources of DNA evidence to identify current and past occupants of a crime scene.
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Affiliation(s)
- Chiara Fantinato
- Department of Forensic Sciences, Oslo University Hospital, Oslo, Norway.
- Department of Forensic Medicine, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
| | - Ane Elida Fonneløp
- Department of Forensic Sciences, Oslo University Hospital, Oslo, Norway
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway
| | - Øyvind Bleka
- Department of Forensic Sciences, Oslo University Hospital, Oslo, Norway
| | | | - Peter Gill
- Department of Forensic Sciences, Oslo University Hospital, Oslo, Norway
- Department of Forensic Medicine, Institute of Clinical Medicine, University of Oslo, Oslo, Norway
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6
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Recipon M, Agniel R, Leroy-Dudal J, Fritz T, Carreiras F, Hermitte F, Hubac S, Gallet O, Kellouche S. Targeting cell-derived markers to improve the detection of invisible biological traces for the purpose of genetic-based criminal identification. Sci Rep 2023; 13:18105. [PMID: 37872292 PMCID: PMC10593828 DOI: 10.1038/s41598-023-45366-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 10/18/2023] [Indexed: 10/25/2023] Open
Abstract
At a crime scene, investigators are faced with a multitude of traces. Among them, biological traces are of primary interest for the rapid genetic-based identification of individuals. "Touch DNA" consists of invisible biological traces left by the simple contact of a person's skin with objects. To date, these traces remain undetectable with the current methods available in the field. This study proposes a proof-of-concept for the original detection of touch DNA by targeting cell-derived fragments in addition to DNA. More specifically, adhesive-structure proteins (laminin, keratin) as well as carbohydrate patterns (mannose, galactose) have been detected with keratinocyte cells derived from a skin and fingermark touch-DNA model over two months in outdoor conditions. Better still, this combinatory detection strategy is compatible with DNA profiling. This proof-of-concept work paves the way for the optimization of tools that can detect touch DNA, which remains a real challenge in helping investigators and the delivery of justice.
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Affiliation(s)
- Mathilde Recipon
- Equipe de Recherche sur les Relations Matrice Extracellulaire-Cellules, ERRMECe, (EA1391), Groupe Matrice Extracellulaire et Physiopathologie (MECuP), Institut des Matériaux, I-MAT (FD4122), CY Cergy Paris Université, Neuville sur Oise, France.
- Institut de Recherche Criminelle de la Gendarmerie Nationale, Cergy-Pontoise, France.
| | - Rémy Agniel
- Equipe de Recherche sur les Relations Matrice Extracellulaire-Cellules, ERRMECe, (EA1391), Groupe Matrice Extracellulaire et Physiopathologie (MECuP), Institut des Matériaux, I-MAT (FD4122), CY Cergy Paris Université, Neuville sur Oise, France
| | - Johanne Leroy-Dudal
- Equipe de Recherche sur les Relations Matrice Extracellulaire-Cellules, ERRMECe, (EA1391), Groupe Matrice Extracellulaire et Physiopathologie (MECuP), Institut des Matériaux, I-MAT (FD4122), CY Cergy Paris Université, Neuville sur Oise, France
| | - Thibaud Fritz
- Institut de Recherche Criminelle de la Gendarmerie Nationale, Cergy-Pontoise, France
| | - Franck Carreiras
- Equipe de Recherche sur les Relations Matrice Extracellulaire-Cellules, ERRMECe, (EA1391), Groupe Matrice Extracellulaire et Physiopathologie (MECuP), Institut des Matériaux, I-MAT (FD4122), CY Cergy Paris Université, Neuville sur Oise, France
| | - Francis Hermitte
- Institut de Recherche Criminelle de la Gendarmerie Nationale, Cergy-Pontoise, France
| | - Sylvain Hubac
- Institut de Recherche Criminelle de la Gendarmerie Nationale, Cergy-Pontoise, France
| | - Olivier Gallet
- Equipe de Recherche sur les Relations Matrice Extracellulaire-Cellules, ERRMECe, (EA1391), Groupe Matrice Extracellulaire et Physiopathologie (MECuP), Institut des Matériaux, I-MAT (FD4122), CY Cergy Paris Université, Neuville sur Oise, France
| | - Sabrina Kellouche
- Equipe de Recherche sur les Relations Matrice Extracellulaire-Cellules, ERRMECe, (EA1391), Groupe Matrice Extracellulaire et Physiopathologie (MECuP), Institut des Matériaux, I-MAT (FD4122), CY Cergy Paris Université, Neuville sur Oise, France
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7
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Kaesler T, Kirkbride KP, Linacre A. Improvements, factors, and influences on DNA recovery from firearms. Forensic Sci Int Genet 2023; 65:102873. [PMID: 37094516 DOI: 10.1016/j.fsigen.2023.102873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 01/31/2023] [Accepted: 04/13/2023] [Indexed: 04/26/2023]
Abstract
Touch DNA recovery from firearms can be central to many criminal investigations, yet the generation of DNA profiles from these items remains poor. Currently in Australia, published casework data highlights extremely poor DNA success from samples recovered from firearms. Only between 5% and 25% of samples result in useful DNA data and therefore increasing the success of DNA recovered from firearms is highly important but has not yet been explored in-depth. This study focused on increasing the recovery of DNA from ten firearm components that were held for 15 s. Multiple recovery methods were used, and the resulting genetic data compared. DNA evidence may be deliberately removed from firearms after discharge to hamper forensic investigations, therefore this study examined the effect of wiping down the components or handling them with gloves. A standard double swab and rinse swab recovery method resulted in an average of 73% cellular recovery. A cumulative swab process had the highest average recovery at 86%, although it was found that increasing the DNA yield led to an increase in mixture complexity. Wiping over the components was observed to remove on average 69% of cellular material, compared with 33% when handed with gloves. However, the size and texture of the components affected the efficiency of cellular material removal. The results from this study allow for prioritisation of areas to sample on firearms, as well as suggesting techniques that can be applied for the optimum process of cellular recovery and subsequent generation of STR DNA data.
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Affiliation(s)
- Todd Kaesler
- College of Science & Engineering, Flinders University, Adelaide 5042, South Australia, Australia.
| | - K Paul Kirkbride
- College of Science & Engineering, Flinders University, Adelaide 5042, South Australia, Australia
| | - Adrian Linacre
- College of Science & Engineering, Flinders University, Adelaide 5042, South Australia, Australia
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8
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Kwok R, Parsons R, Fieldhouse S, Walton-Williams L. An evaluation of two adhesive media for the recovery of DNA from latent fingermarks: A preliminary study. Forensic Sci Int 2023; 344:111574. [PMID: 36739851 DOI: 10.1016/j.forsciint.2023.111574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/11/2023] [Accepted: 01/25/2023] [Indexed: 01/26/2023]
Abstract
Dual recovery of forensic evidence is beneficial for crime scene and evidence processing as it can potentially double the evidential value of a single source, even more so in instances of DNA fingermarks. The use of adhesive liftering media has shown comparable results to swabbing when dealing with trace DNA recovery. Gelatine lifters have displayed the potential to recover DNA from latent fingermarks with minimal alteration to friction ridge detail post application, yet their ability to recover DNA has not fully been explored. The aim of this research was to compare the use of gelatine lifters with more readily available masking tape in their ability to recover cellular material from latent fingermarks. Natural (n = 120) and sebaceous (n = 120) fingermarks were deposited and aged in time frames from fresh, 1-day, 2-day, 1-week, 2-weeks, and 1 month. DiamondTM Nucleic Acid Dye was used as a visualisation method for any DNA containing cellular material. Images of the fingermarks pre and post lifting, and on the lifting media were imaged using the DSC®5 system. The media's ability to recover cellular material was assessed using fluorescent particle analysis by the employment of the free software ImageJ. Fluorescent particles could be observed on the lifting media post lifting with the use of DiamondTM Dye. Time was not seen to influence the variation in the number of fluorescent particles observed. The use of gelatine lifters was found to have a higher amount of recovered DNA containing cellular material than masking tape. Visualisation of particles on masking tape were inhibited by its porosity and absorption of the dye. Some fingermark detail could be observed in the gelatine lifters. The DSC®5 system was suitable for imaging fingermarks stained with DiamondTM Dye.
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Affiliation(s)
- Ross Kwok
- School of Justice, Security and Sustainability, Staffordshire University, ST42DF, UK.
| | - Robin Parsons
- School of Justice, Security and Sustainability, Staffordshire University, ST42DF, UK.
| | - Sarah Fieldhouse
- School of Justice, Security and Sustainability, Staffordshire University, ST42DF, UK.
| | - Laura Walton-Williams
- School of Justice, Security and Sustainability, Staffordshire University, ST42DF, UK.
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Linacre A, Petcharoen P. Detection of Latent DNA Using a DNA Binding Dye. Methods Mol Biol 2023; 2685:359-366. [PMID: 37439993 DOI: 10.1007/978-1-0716-3295-6_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/14/2023]
Abstract
Latent DNA can be deposited every time a person holds or touches an item. This "touch DNA" can be crucial evidence if the item is of forensic significance. Until very recently, there were no means to visualize this DNA. The advent of using a dye that binds to DNA has opened up this possibility. The application of the dye is simple to perform, and a mobile microscope allows rapid visualization of the cellular material, even in ambient light. The dye can be applied in a solution of either 75% ethanol or water. As this is a solution-based dye, the application works best on non-absorbent surfaces.DNA within cellular material, such as dead skin cells, appears as green dots under 50X magnification; zooming to 220X magnification confirms that these are cells. The location and number of these cells can be photographed allowing a record of the presence of otherwise latent DNA.This chapter details the processes involved in the detection of latent DNA using Diamond™ Nucleic Acid Dye with both control samples (that act as very effective training samples) and the staining of evidential items. By developing skills in determining cell locations, a targeted approach to crime scene collection is now possible.
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Affiliation(s)
- Adrian Linacre
- Forensic DNA Technology, College of Science and Engineering, Flinders University, Adelaide, SA, Australia.
| | - Piyamas Petcharoen
- Forensic Technology and Innovation Module, School of Biology, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, Thailand
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Environmental DNA as an innovative technique to identify the origins of falsified antimalarial tablets-a pilot study of the pharmabiome. Sci Rep 2022; 12:21997. [PMID: 36539480 PMCID: PMC9764312 DOI: 10.1038/s41598-022-25196-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 11/25/2022] [Indexed: 12/24/2022] Open
Abstract
Falsified medicines are a major threat to global health. Antimalarial drugs have been particularly targeted by criminals. As DNA analysis has revolutionized forensic criminology, we hypothesized that these techniques could also be used to investigate the origins of falsified medicines. Medicines may contain diverse adventitious biological contamination, and the sealed nature of blister-packages may capture and preserve genetic signals from the manufacturing processes allowing identification of production source(s). We conducted a blinded pilot study to determine if such environmental DNA (eDNA) could be detected in eleven samples of falsified and genuine artesunate antimalarial tablets, collected in SE Asia, which could be indicative of origin. Massively Parallel Sequencing (MPS) was used to characterize microbial and eukaryote diversity. Two mitochondrial DNA analysis approaches were explored to detect the presence of human DNA. Trace eDNA from these low biomass samples demonstrated sample specific signals using two target markers. Significant differences in bacterial and eukaryote DNA community structures were observed between genuine and falsified tablets and between different packaging types of falsified artesunate. Human DNA, which was indicative of likely east Asian ancestry, was found in falsified tablets. This pilot study of the 'pharmabiome' shows the potential of environmental DNA as a powerful forensic tool to assist with the identification of the environments, and hence location and timing, of the source and manufacture of falsified medicines, establish links between seizures and complement existing tools to build a more complete picture of criminal trade routes. The finding of human DNA in tablets raises important ethical issues that need to be addressed.
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11
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Petcharoen P, Kirkbride KP, Linacre A. Monitoring cell loss through repetitive deposition. J Forensic Sci 2022; 67:2453-2457. [DOI: 10.1111/1556-4029.15140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 09/05/2022] [Accepted: 09/08/2022] [Indexed: 11/28/2022]
Affiliation(s)
- Piyamas Petcharoen
- School of Biology, Institute of Science Suranaree University of Technology Nakhon Ratchasima Thailand
- College of Science & Engineering Flinders University Adelaide South Australia Australia
| | | | - Adrian Linacre
- College of Science & Engineering Flinders University Adelaide South Australia Australia
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12
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Detection and Analyses of Latent DNA. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES 2022. [DOI: 10.1016/j.fsigss.2022.09.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Evaluation of the Effects of Different Sample Collection Strategies on DNA/RNA Co-Analysis of Forensic Stains. Genes (Basel) 2022; 13:genes13060983. [PMID: 35741745 PMCID: PMC9222428 DOI: 10.3390/genes13060983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 05/18/2022] [Accepted: 05/27/2022] [Indexed: 02/04/2023] Open
Abstract
The aim of this study was to evaluate the impact of different moistening agents (RNase-free water, absolute anhydrous ethanol, RNAlater®) applied to collection swabs on DNA/RNA retrieval and integrity for capillary electrophoresis applications (STR typing, cell type identification by mRNA profiling). Analyses were conducted on whole blood, luminol-treated diluted blood, saliva, semen, and mock skin stains. The effects of swab storage temperature and the time interval between sample collection and DNA/RNA extraction were also investigated. Water provided significantly higher DNA yields than ethanol in whole blood and semen samples, while ethanol and RNAlater® significantly outperformed water in skin samples, with full STR profiles obtained from over 98% of the skin samples collected with either ethanol or RNAlater®, compared to 71% of those collected with water. A significant difference in mRNA profiling success rates was observed in whole blood samples between swabs treated with either ethanol or RNAlater® (100%) and water (37.5%). Longer swab storage times before processing significantly affected mRNA profiling in saliva stains, with the success rate decreasing from 91.7% after 1 day of storage to 25% after 7 days. These results may contribute to the future development of optimal procedures for the collection of different types of biological traces.
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14
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DNA deposited in whole thumbprints: a reproducibility study. Forensic Sci Int Genet 2022; 58:102683. [DOI: 10.1016/j.fsigen.2022.102683] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 02/21/2022] [Accepted: 02/24/2022] [Indexed: 01/27/2023]
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15
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Ceresa L, Kitchner E, Seung M, Bus MM, Budowle B, Chavez J, Gryczynski I, Gryczynski Z. A novel approach to imaging and visualization of minute amounts of DNA in small volume samples. Analyst 2021; 146:6520-6527. [PMID: 34559174 DOI: 10.1039/d1an01391b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This report presents a novel approach for detecting and visualizing small to trace amounts of DNA in a sample. By utilizing both the change in emission spectrum and change in fluorescence lifetime, there is a significant increase in detection sensitivity allowing for the imaging/visualizing of a picograms amount of DNA in a microliters volume. As in the previous reports, one of the oldest DNA intercalators, Ethidium Bromide (EtBr), is employed as a model system. With this new approach, it is feasible to visualize just a few hundred picograms of DNA without the need for prior DNA amplification. The sensitivity can later be largely improved by using an intercalator that exhibits a higher affinity to DNA and a larger fluorescence change upon binding to DNA (e.g., ethidium homodimer, YOYO, or Diamond nucleic acid dyes).
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Affiliation(s)
- Luca Ceresa
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University, Dr. Fort Worth, Texas, 76129, USA.
| | - Emma Kitchner
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University, Dr. Fort Worth, Texas, 76129, USA.
| | - Michael Seung
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University, Dr. Fort Worth, Texas, 76129, USA.
| | - Magdalena M Bus
- Center for Human Identification, Graduate School of Biomedical Sciences, University of North Texas Health Science Center, 3500 Camp Bowie Blvd, CBH-250, Ft Worth, TX 76107, USA.,Department of Microbiology, Immunology and Genetics, Graduate School of Biomedical Sciences, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
| | - Bruce Budowle
- Center for Human Identification, Graduate School of Biomedical Sciences, University of North Texas Health Science Center, 3500 Camp Bowie Blvd, CBH-250, Ft Worth, TX 76107, USA.,Department of Microbiology, Immunology and Genetics, Graduate School of Biomedical Sciences, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
| | - Jose Chavez
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University, Dr. Fort Worth, Texas, 76129, USA.
| | - Ignacy Gryczynski
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University, Dr. Fort Worth, Texas, 76129, USA.
| | - Zygmunt Gryczynski
- Department of Physics and Astronomy, Texas Christian University, 2800 S. University, Dr. Fort Worth, Texas, 76129, USA.
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16
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Cook R, Mitchell N, Henry J. Assessment of Diamond™ Nucleic Acid Dye for the identification and targeted sampling of latent DNA in operational casework. Forensic Sci Int Genet 2021; 55:102579. [PMID: 34455366 DOI: 10.1016/j.fsigen.2021.102579] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 08/04/2021] [Accepted: 08/15/2021] [Indexed: 12/19/2022]
Abstract
Recovery and DNA profiling of latent touch DNA deposits is a ubiquitous practice by operational forensic laboratories that provides critical evidence in many criminal investigations. Despite recent improvements in the sensitivity of contemporary DNA profiling kits, the inability to localise and visually quantify touch DNA deposits on an exhibit means that ineffective or unwarranted sampling is often performed leading to poor success. Diamond™ Nucleic Acid Dye (DD) is a fluorescent DNA binding dye which has recently been shown to bind to corneocytes enabling visualisation and targeted sampling of touch DNA deposits under controlled conditions. The ability to translate these findings to operational casework, where a diverse range of substrates is encountered and the amount and distribution of touch DNA is uncontrolled, is currently unknown. Here, we provide the first report on the use of DD in an operational context. Spraying items with DD was shown to have no impact on downstream immunological testing, DNA extraction, or DNA profiling with the GlobalFiler™ PCR amplification kit. DD was shown to effectively locate areas of touch DNA on select exhibits using the Polilight. Issues with background fluorescence, non-specific staining, interference from fingerprint enhancement reagents, or absorbance of the excitation light by black surfaces demonstrated that DD is not compatible with all exhibits. Background fluorescence also prevented the use of DD to screen for the presence of cellular material on IsoHelix swabs post-sampling but it was suitable for screening Lovell DNA tapelifts. A casework trial of 49 plastic bag and tape exhibits showed limited application of DD to triage out negative items as DNA was recovered from items where DD fluorescence was not detected. Where DD fluorescence was detected, its broad distribution prevented targeted sampling and any correlation to be made between the amount observed and DNA yield or profiling outcome. The DD procedure also increased the time taken to search exhibits and risk of inadvertent contamination. Our study suggests that DD is not suited as a generalised screening technique across all touch casework exhibits but further investigation is warranted to determine its applicability to specific exhibit types.
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Affiliation(s)
- Russell Cook
- Forensic Science SA, GPO Box 2790, Adelaide, South Australia 5001, Australia
| | - Natasha Mitchell
- Forensic Science SA, GPO Box 2790, Adelaide, South Australia 5001, Australia
| | - Julianne Henry
- Forensic Science SA, GPO Box 2790, Adelaide, South Australia 5001, Australia; College of Science and Engineering, Flinders University of South Australia, Bedford Park, South Australia 5042, Australia.
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17
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Burrill J, Hotta R, Daniel B, Frascione N. Accumulation of endogenous and exogenous nucleic acids in "Touch DNA" components on hands. Electrophoresis 2021; 42:1594-1604. [PMID: 34080688 DOI: 10.1002/elps.202000371] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 05/07/2021] [Accepted: 05/20/2021] [Indexed: 02/03/2023]
Abstract
Successful forensic DNA profiling from handled items is increasingly routine in casework. This "touch DNA" is thought to contain both cellular and acellular nucleic acid sources. However, there is little clarity on the origins or characteristics of this material. The cellular component consists of anucleate, terminally differentiated corneocytes (assumed to lack DNA), and the occasional nucleated cell. The acellular DNA source is fragmentary, presumably cell breakdown products. This study examines the relative contributions each component makes to the hand-secretions (endogenous) and hand-accumulations (exogenous) by recovering rinses from the inside and outside of worn gloves. Additionally, cellular and acellular DNA was measured at timepoints up to 2 h after hand washing, both with and without interim contact. Microscopic examination confirmed cell morphology and presence of nucleic acids. Following the novel application of a hair keratinocyte lysis method and plasma-DNA fragment purification to hand rinse samples, DNA profiles were generated from both fractions. Exogenous cell-free DNA is shown to be a significant source of touch DNA, which reaccumulates quickly, although its amplifiable nuclear alleles are limited. Endogenous DNA is mostly cellular in origin and provides more allelic information consistently over time.
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Affiliation(s)
- Julia Burrill
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, Faculty of Life Sciences and Medicine, King's College London, London, UK
| | - Rachel Hotta
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, Faculty of Life Sciences and Medicine, King's College London, London, UK
| | - Barbara Daniel
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, Faculty of Life Sciences and Medicine, King's College London, London, UK
| | - Nunzianda Frascione
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, Faculty of Life Sciences and Medicine, King's College London, London, UK
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18
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Tanzhaus K, Reiß MT, Zaspel T. "I've never been at the crime scene!" - gloves as carriers for secondary DNA transfer. Int J Legal Med 2021; 135:1385-1393. [PMID: 33948711 DOI: 10.1007/s00414-021-02597-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Accepted: 04/05/2021] [Indexed: 01/30/2023]
Abstract
Over recent years, DNA profiling techniques have become highly sensitive. Even small amounts of DNA at crime scenes can be analysed leading to new defence strategies. At court, defence lawyers rarely question the existence of a DNA trace (source level) but challenge how the DNA was transferred to the scene (activity level). Nowadays, the most common defence strategy is to claim that somebody else had stolen the defendant's gloves and used them while breaking and entering. In this study we tested this statement. Using gloves made of different material (cloth, leather, rubber) and varying secondary transfer surfaces (wood, metal, glass), we simulated a few of the most likely transfer scenarios that occur during breaking and entering. While we detected the presence of DNA on the outside of 92 of the 98 gloves tested, we observed only one case of secondary transfer in a total of 81 transfer experiments. This data demonstrates that secondary transfer under conditions resembling realistic conditions is a very rare event.
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Affiliation(s)
- Katrin Tanzhaus
- State Department of Criminal Investigation in Thuringia, Kranichfelder Str. 1, 99097, Erfurt, Germany.
| | - Marie-Therese Reiß
- State Department of Criminal Investigation in Thuringia, Kranichfelder Str. 1, 99097, Erfurt, Germany
| | - Tom Zaspel
- State Department of Criminal Investigation in Thuringia, Kranichfelder Str. 1, 99097, Erfurt, Germany
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19
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Champion J, Kanokwongnuwut P, van Oorschot RAH, Taylor D, Linacre A. Evaluation of a fluorescent dye to visualize touch DNA on various substrates. J Forensic Sci 2021; 66:1435-1442. [PMID: 33629435 DOI: 10.1111/1556-4029.14695] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 01/29/2021] [Accepted: 02/08/2021] [Indexed: 11/29/2022]
Abstract
A wide variety of items are submitted as evidence in a forensic investigation. Identifying the location of DNA on such items is central to maximizing DNA profiling success and thus the ability to link a person of interest to a particular item or crime. Recent publications describe a fluorescent staining method using Diamond™ Dye (DD) to visualize cellular material on the surface of non-porous items (e.g., glass, plastic). However, substrates of varying porosity and background color have not yet been examined. Varying porous substrates (i.e., paper bank note, stamp, cigarette, wooden matchstick, and fabric) and non-porous substrates (i.e., enamel tooth and plastic bank note) were examined for their suitability with the use of DD. To improve the visualization of cellular material on the porous substrates, we also explored two DD diluents and adjusting image contrast. The results suggest the optimal diluent depends on the absorbent nature of the substrate. For example, ethanol was sufficient for visualization on the non-porous substrates, whereas water was better for the porous substrates. While cellular material was detected on the paper bank note, tooth, and stamp, background fluorescence or autofluorescence and surface type of matchstick prevented clear visualization on this substrate. It was also determined that by adjusting the contrast of images for tooth, paper bank note and matchstick aided in the detection of cellular material. Overall, this study extends the use of DD for latent DNA detection to absorbent substrates, highlights the limitations associated with these substrate types, and suggests modifications to improve visualization on these challenging substrates.
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Affiliation(s)
- Jessica Champion
- College of Science & Engineering, Flinders University, Adelaide, SA, Australia
| | | | - Roland A H van Oorschot
- Office of the Chief Forensic Scientist, Victoria Police Forensic Services Department, Macleod, Vic., Australia.,School of Molecular Sciences, La Trobe University, Bundoora, Vic., Australia
| | - Duncan Taylor
- College of Science & Engineering, Flinders University, Adelaide, SA, Australia.,Forensic Science South Australia, Adelaide, SA, Australia
| | - Adrian Linacre
- College of Science & Engineering, Flinders University, Adelaide, SA, Australia
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20
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How many cells are required for successful DNA profiling? Forensic Sci Int Genet 2021; 51:102453. [PMID: 33422808 DOI: 10.1016/j.fsigen.2020.102453] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Revised: 12/01/2020] [Accepted: 12/06/2020] [Indexed: 02/07/2023]
Abstract
Through advances in fluorescent nucleic acid dye staining and visualisation, targeted collection of cellular material deposited, for example by touch or within a saliva deposit, is possible. In regard to the potential evidentiary value of the deposit the questions remain: 'How many cells are required to generate an informative DNA profile?'; 'How many visualised corneocytes within a touch deposit compared to typical nucleated cells are required in order to achieve successful DNA profiling?'. Diamond TM Nucleic Acid Dye (DD) staining of cellular material, and subsequent visualisation utilising portable fluorescence microscopy, was performed for touch and saliva samples to target defined numbers of cells for collection, by swab and tapelift, and subsequent processing via direct PCR and PCR post-extraction. The resulting DNA quantification data and alleles generated within subsequent DNA profiles could be correlated to the number of cells initially collected to determine cellular threshold requirements for DNA profile generation for each workflow. Full profiles were consistently generated using direct PCR when the template was ≥40 buccal cells collected by either a swab or tapelift. By contrast ≥800 corneocytes collected by swabbing or ≥4,000 corneocytes collected by a tapelift were required to generate same number of STR alleles from touch samples. When samples were processed through a DNA extraction workflow, ≥80 buccal cells were required to generate full profiles from both swab and tapelift, while touch samples required ≥4,000 corneocytes collected by a swab and >8,000 corneocytes collected by a tapelift. The data presented within this study allow for informative sample triage and workflow decisions to be made to optimise STR amplification based on the presence and visual quantification of stained cellular material.
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21
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Kitchner E, Chavez J, Ceresa L, Bus MM, Budowle B, Gryczynski Z. A novel approach for visualization and localization of small amounts of DNA on swabs to improve DNA collection and recovery process. Analyst 2021; 146:1198-1206. [PMID: 33393553 DOI: 10.1039/d0an02043e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this report, a simple and practical procedure is proposed for DNA localization on a solid matrix e.g., a collection swab. The approach is straightforward and employs spectrum decomposition using a model DNA intercalator Ethidium Bromide (EtBr). The proposed approach can detect picograms of DNA in solution and nanograms of DNA on solid surfaces (swabs) without the need for PCR amplification. The proposed technology offers the possibility for developing an inexpensive, sensitive, rapid, and practical method for localizing and recovering DNA deposited on collection swabs during routine DNA screening. Improved detection of low DNA concentrations is needed and, if feasible, will allow for better decision making in clinical medicine, biological and environmental research, and human identification in forensic investigations.
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Affiliation(s)
- Emma Kitchner
- Department of Physics and Astronomy, Texas Christian University, Fort Worth, TX 76129, USA.
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22
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Burrill J, Rammenou E, Alawar F, Daniel B, Frascione N. Corneocyte lysis and fragmented DNA considerations for the cellular component of forensic touch DNA. Forensic Sci Int Genet 2020; 51:102428. [PMID: 33338861 DOI: 10.1016/j.fsigen.2020.102428] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 10/30/2020] [Accepted: 11/12/2020] [Indexed: 01/28/2023]
Abstract
DNA deposited by individuals' hands is a routine part of forensic analysis, yet little is understood about the precise cellular contents left by handling. "Dead" skin cells known as corneocytes make up the majority of the cellular material left in touch deposits by people's hands but are known to lack nuclei, making their DNA content ambiguous. Here we measure DNA released from anucleate corneocytes following various lysis methods to determine how much DNA may be present in these cells and how best to recover it from inside the cornified envelope. We demonstrate that enhanced lysis methods using a reducing agent and longer incubation may be valuable for hand deposit samples. Corneocyte DNA can be characterized as highly degraded based on the quantification, STR profiling and fluorescence microscopy of the cells from freshly washed hands. Purification to target shorter DNA fragments is demonstrated. DNA from the washed corneocyte cells is shown to constitute the majority of recoverable DNA with these methods. We consider the use of new methods adapted to cornified cells and fragmented DNA for future research into this sample type.
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Affiliation(s)
- Julia Burrill
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, King's College London, London, United Kingdom.
| | - Elli Rammenou
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, King's College London, London, United Kingdom.
| | - Fatima Alawar
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, King's College London, London, United Kingdom.
| | - Barbara Daniel
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, King's College London, London, United Kingdom.
| | - Nunzianda Frascione
- King's Forensics, Department of Analytical, Environmental & Forensic Sciences, School of Population Health & Environmental Sciences, King's College London, London, United Kingdom.
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23
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Detecting latent DNA in wildlife forensic science investigations. Sci Justice 2020; 60:358-362. [DOI: 10.1016/j.scijus.2020.02.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Revised: 01/31/2020] [Accepted: 02/02/2020] [Indexed: 11/18/2022]
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24
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Kanokwongnuwut P, Paul Kirkbride K, Linacre A. An assessment of tape-lifts. Forensic Sci Int Genet 2020; 47:102292. [DOI: 10.1016/j.fsigen.2020.102292] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2019] [Revised: 03/22/2020] [Accepted: 03/23/2020] [Indexed: 01/30/2023]
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25
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Martin B, Kanokwongnuwut P, Taylor D, Kirkbride KP, Armitt D, Linacre A. Successful STR amplification of post-blast IED samples by fluorescent visualisation and direct PCR. Forensic Sci Int Genet 2020; 46:102256. [DOI: 10.1016/j.fsigen.2020.102256] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Revised: 12/22/2019] [Accepted: 01/27/2020] [Indexed: 11/16/2022]
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26
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Olsen A, Miller M, Yadavalli VK, Ehrhardt CJ. Open source software tool for the automated detection and characterization of epithelial cells from trace biological samples. Forensic Sci Int 2020; 312:110300. [PMID: 32371282 DOI: 10.1016/j.forsciint.2020.110300] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 04/08/2020] [Accepted: 04/14/2020] [Indexed: 11/25/2022]
Abstract
This paper presents a strategy for an unsupervised workflow for identifying epithelial cells in microscopic images and characterizing their morphological and/or optical properties. The proposed method can be used on cells that have been stained with fluorescent dyes and imaged using conventional optical microscopes. The workflow was tested on cell populations that were imaged directly on touch/contact surfaces and stained with nucleic acid dyes to visualize genetic content. Our results show that this approach could be a useful strategy for characterizing differences in staining efficiency and/or morphological properties of individual cells or aggregate populations within a biological sample. Further, they can potentially reduce the laborious nature of microscopic analysis and increase throughput and reproducibility of similar studies.
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Affiliation(s)
- Anita Olsen
- Department of Chemical and Life Sciences Engineering, Virginia Commonwealth University, Richmond, VA, United States
| | - Mekhi Miller
- Department of Forensic Science, Virginia Commonwealth University, Richmond, VA, United States
| | - Vamsi K Yadavalli
- Department of Chemical and Life Sciences Engineering, Virginia Commonwealth University, Richmond, VA, United States
| | - Christopher J Ehrhardt
- Department of Forensic Science, Virginia Commonwealth University, Richmond, VA, United States.
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27
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Young JM, Linacre A. Use of a Spray Device to Locate Touch DNA on Casework Samples. J Forensic Sci 2020; 65:1280-1288. [DOI: 10.1111/1556-4029.14304] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2019] [Revised: 01/20/2020] [Accepted: 01/28/2020] [Indexed: 11/30/2022]
Affiliation(s)
- Jennifer M. Young
- College of Science and Engineering Flinders University Bedford Park South Australia Australia
| | - Adrian Linacre
- College of Science and Engineering Flinders University Bedford Park South Australia Australia
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28
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Prevalence of DNA from the driver, passengers and others within a car of an exclusive driver. Forensic Sci Int 2020; 307:110139. [DOI: 10.1016/j.forsciint.2020.110139] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 12/12/2019] [Accepted: 12/28/2019] [Indexed: 11/23/2022]
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29
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Krosch MN, McNevin A, Cook J, Allen C, Keatinge D. Fluorescent dye-based detection of trace DNA on forensic tapelifts from worn shirts. AUST J FORENSIC SCI 2020. [DOI: 10.1080/00450618.2019.1711177] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Matt N. Krosch
- Quality Management Section, Forensic Services Group, Queensland Police Service, Brisbane, Australia
| | - Allan McNevin
- Police Services Stream, Forensic & Scientific Services, Queensland Health, Coopers Plains, Australia
| | - Jamie Cook
- Quality Management Section, Forensic Services Group, Queensland Police Service, Brisbane, Australia
| | - Cathie Allen
- Police Services Stream, Forensic & Scientific Services, Queensland Health, Coopers Plains, Australia
| | - David Keatinge
- Quality Management Section, Forensic Services Group, Queensland Police Service, Brisbane, Australia
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30
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Detection of cellular material within handprints. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES 2019. [DOI: 10.1016/j.fsigss.2019.09.075] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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31
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Visualising DNA transfer: Latent DNA detection using Diamond Dye. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES 2019. [DOI: 10.1016/j.fsigss.2019.09.088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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33
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Fabbri M, Frisoni P, Marti M, Talarico A, Bonato O, Coppone M, Lucenti E, Gaudio R, Neri M. Application of 13 loci STR multiplex for cannabis sativa genotyping. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES 2019. [DOI: 10.1016/j.fsigss.2019.10.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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34
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Tang J, Ostrander J, Wickenheiser R, Hall A. Touch DNA in forensic science: The use of laboratory-created eccrine fingerprints to quantify DNA loss. Forensic Sci Int Synerg 2019; 2:1-16. [PMID: 32411992 PMCID: PMC7219128 DOI: 10.1016/j.fsisyn.2019.10.004] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 10/17/2019] [Accepted: 10/18/2019] [Indexed: 12/13/2022]
Abstract
Touch samples typically contain a limited quantity of DNA, which can be further reduced during collection and analysis. It is not clear, however, at which point(s) the majority of the DNA is lost because there is not a reliable positive control to track the quantity of DNA through the analysis procedures. To take the first step in bridging this gap, we established a set of laboratory-created eccrine, or mock, fingerprints containing known quantities of DNA. Next, we defined a set of process controls to quantify loss at key fail points in the collection/extraction procedures, analyzing a total of 1200 mock fingerprints deposited on four different surfaces. We quantified DNA loss to the surface, the swab and at extraction, completing the evaluation with ANOVA. With better understanding of DNA yields and the mechanisms of loss, targeted process improvements will bring touch DNA samples into even more routine use with standardized, optimized procedures.
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Affiliation(s)
- Jessica Tang
- University of Chicago at Illinois, Department of Biopharmaceutical Sciences, 833 S. Wood St, Chicago, IL, 60612, USA
| | - Jennifer Ostrander
- University of Chicago at Illinois, Department of Biopharmaceutical Sciences, 833 S. Wood St, Chicago, IL, 60612, USA
| | - Ray Wickenheiser
- New York State Police Crime Lab System, 1220 Washington Avenue, Building 30, Albany, NY, 12226, USA
| | - Ashley Hall
- University of Chicago at Illinois, Department of Biopharmaceutical Sciences, 833 S. Wood St, Chicago, IL, 60612, USA
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35
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Improved STR profiles from improvised explosive device (IED): fluorescence latent DNA detection and direct PCR. Forensic Sci Int Genet 2019; 41:168-176. [DOI: 10.1016/j.fsigen.2019.05.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Revised: 03/27/2019] [Accepted: 05/14/2019] [Indexed: 11/30/2022]
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36
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Enhancement of fingermarks and visualizing DNA. Forensic Sci Int 2019; 300:99-105. [DOI: 10.1016/j.forsciint.2019.04.035] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 04/25/2019] [Accepted: 04/27/2019] [Indexed: 01/26/2023]
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37
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A review of trace “Touch DNA” deposits: Variability factors and an exploration of cellular composition. Forensic Sci Int Genet 2019; 39:8-18. [DOI: 10.1016/j.fsigen.2018.11.019] [Citation(s) in RCA: 66] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Revised: 11/14/2018] [Accepted: 11/26/2018] [Indexed: 02/07/2023]
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38
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Gosch A, Courts C. On DNA transfer: The lack and difficulty of systematic research and how to do it better. Forensic Sci Int Genet 2019; 40:24-36. [PMID: 30731249 DOI: 10.1016/j.fsigen.2019.01.012] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 12/21/2018] [Accepted: 01/30/2019] [Indexed: 01/07/2023]
Abstract
Since DNA from touched items and surfaces ("touch DNA") can successfully and reliably be analyzed, the question as to how a particular DNA containing sample came to be from where it was recovered is of increasing forensic interest and expert witnesses in court are increasingly challenged to assess for instance whether an incriminatory DNA sample matching to a suspect could have been transferred to the crime scene in an innocent manner and to guess at the probability of such an occurrence. The latter however will frequently entail expressing a subjective probability i.e. simply making a best guess from experience. There is, to the present date, an extensive and complex body of literature on primary, secondary, tertiary and even higher order DNA transfer, its possibility, plausibility, dependency on an array of variables and factors and vast numbers of permutations thereof. However, from our point of view there is a lack of systematic data on DNA transfer with existing research widely varying in quality and relevance. Our aim was, starting from a comprehensive survey of the status quo and appreciating its increasing importance, to in the first part of our review raise consciousness towards the underestimated and insufficiently accounted for complexity of DNA transfer and thus appendant research of forensic scientists serving as expert witnesses in court but also acting in the role of a journal referee to point them to areas of criticism when reviewing a manuscript on DNA transfer. In the second part, we present propositions how to systematize and integrate future research efforts concerning DNA transfer. Also, we present a searchable database providing an extensive overview of the current state of knowledge on DNA transfer, intended to facilitate the identification of relevant studies adding knowledge to a specific question and thus help forensic experts to base their opinion on a broader, more complete and more reproducible selection of studies.
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Affiliation(s)
- Annica Gosch
- Institute of Forensic Medicine, University Hospital of Schleswig-Holstein, Arnold-Heller-Strasse 12, 24105 Kiel, Germany
| | - Cornelius Courts
- Institute of Forensic Medicine, University Hospital of Schleswig-Holstein, Arnold-Heller-Strasse 12, 24105 Kiel, Germany.
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McCord BR, Gauthier Q, Cho S, Roig MN, Gibson-Daw GC, Young B, Taglia F, Zapico SC, Mariot RF, Lee SB, Duncan G. Forensic DNA Analysis. Anal Chem 2019; 91:673-688. [PMID: 30485738 DOI: 10.1021/acs.analchem.8b05318] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Bruce R McCord
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Quentin Gauthier
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Sohee Cho
- Department of Forensic Medicine , Seoul National University , Seoul , 08826 , South Korea
| | - Meghan N Roig
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Georgiana C Gibson-Daw
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Brian Young
- Niche Vision, Inc. , Akron , Ohio 44311 , United States
| | - Fabiana Taglia
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Sara C Zapico
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Roberta Fogliatto Mariot
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
| | - Steven B Lee
- Forensic Science Program, Justice Studies Department , San Jose State University , San Jose , California 95192 , United States
| | - George Duncan
- Department of Chemistry , Florida International University , Miami , Florida 33199 , United States
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Kanokwongnuwut P, Kirkbride P, Linacre A. Visualising latent DNA on swabs. Forensic Sci Int 2018; 291:115-123. [DOI: 10.1016/j.forsciint.2018.08.016] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Revised: 07/20/2018] [Accepted: 08/17/2018] [Indexed: 01/23/2023]
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