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Wu S, Hooks D, Brightwell G. Current Understanding on the Heterogenous Expression of Plastic Depolymerising Enzymes in Pichia pastoris. Bioengineering (Basel) 2025; 12:68. [PMID: 39851342 PMCID: PMC11760480 DOI: 10.3390/bioengineering12010068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Revised: 01/01/2025] [Accepted: 01/04/2025] [Indexed: 01/26/2025] Open
Abstract
Enzymatic depolymerisation is increasingly recognised as a reliable and environmentally friendly method. The development of this technology hinges on the availability of high-quality enzymes and associated bioreaction systems for upscaling biodegradation. Microbial heterologous expression systems have been studied for meeting this demand. Among these systems, the Pichia pastoris expression system has emerged as a widely used platform for producing secreted heterologous proteins. This article provides an overview of studies involving the recombinant expression of polymer-degrading enzymes using the P. pastoris expression system. Research on P. pastoris expression of interested enzymes with depolymerising ability, including cutinase, lipase, and laccase, are highlighted in the review. The key factors influencing the heterologous expression of polymer-degrading enzymes in P. pastoris are discussed, shedding light on the challenges and opportunities in the development of depolymerising biocatalysts through the P. pastoris expression system.
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Affiliation(s)
- Shuyan Wu
- AgResearch Ltd., Grasslands, Palmerston North 4442, New Zealand; (D.H.); (G.B.)
| | - David Hooks
- AgResearch Ltd., Grasslands, Palmerston North 4442, New Zealand; (D.H.); (G.B.)
| | - Gale Brightwell
- AgResearch Ltd., Grasslands, Palmerston North 4442, New Zealand; (D.H.); (G.B.)
- New Zealand Food Safety Science and Research Centre, Tennent Drive, Massey University, Palmerston North 4474, New Zealand
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de Carvalho Silva AK, Lima FJL, Borges KRA, Wolff LAS, de Andrade MS, Alves RDNS, Cordeiro CB, da Silva MACN, Nascimento MDDSB, da Silva Espósito T, de Barros Bezerra GF. Utilization of Fusarium Solani lipase for enrichment of polyunsaturated Omega-3 fatty acids. Braz J Microbiol 2024; 55:2211-2226. [PMID: 38874742 PMCID: PMC11405586 DOI: 10.1007/s42770-024-01411-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Accepted: 05/31/2024] [Indexed: 06/15/2024] Open
Abstract
Omega-3 fatty acids, such as eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), offer numerous health benefits. Enriching these fatty acids in fish oil using cost-effective methods, like lipase application, has been studied extensively. This research aimed to investigate F. solani as a potential lipase producer and compare its efficacy in enhancing polyunsaturated omega-3 fatty acids with commercial lipases. Submerged fermentation with coconut oil yielded Lipase F2, showing remarkable activity (215.68 U/mL). Lipase F2 remained stable at pH 8.0 (activity: 93.84 U/mL) and active between 35 and 70 °C, with optimal stability at 35 °C. It exhibited resistance to various surfactants and ions, showing no cytotoxic activity in vitro, crucial for its application in the food and pharmaceutical industries. Lipase F2 efficiently enriched EPA and DHA in fish oil, reaching 22.1 mol% DHA and 23.8 mol% EPA. These results underscore the economic viability and efficacy of Lipase F2, a partially purified enzyme obtained using low-cost techniques, demonstrating remarkable stability and resistance to diverse conditions. Its performance was comparable to highly pure commercially available enzymes in omega-3 production. These findings highlight the potential of F. solani as a promising lipase source, offering opportunities for economically producing omega-3 and advancing biotechnological applications in the food and supplements industry.
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Affiliation(s)
- Allysson Kayron de Carvalho Silva
- Doctoral Program in Biotechnology- Northeast Biotechnology Network (RENORBIO), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil.
| | - Fernanda Jeniffer Lindoso Lima
- Doctoral Program in Biotechnology- Northeast Biotechnology Network (RENORBIO), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Katia Regina Assunção Borges
- Doctoral Program in Biotechnology- Northeast Biotechnology Network (RENORBIO), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Laís Araújo Souza Wolff
- Postgraduate Program in Adult Health (PPGSAD), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Marcelo Souza de Andrade
- Postgraduate Program in Adult Health (PPGSAD), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Rita de Nazaré Silva Alves
- Postgraduate Program in Adult Health (PPGSAD), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Carolina Borges Cordeiro
- Postgraduate Program in Adult Health (PPGSAD), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | | | - Maria do Desterro Soares Brandão Nascimento
- Doctoral Program in Biotechnology- Northeast Biotechnology Network (RENORBIO), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
- Postgraduate Program in Adult Health (PPGSAD), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Talita da Silva Espósito
- Department of Oceanography and Limnology, Laboratory of Biotechnology of Aquatic Organisms (BIOAQUA), Federal University of Maranhão, São Luís, Maranhão, Brazil
| | - Geusa Felipa de Barros Bezerra
- Postgraduate Program in Adult Health (PPGSAD), Center for Basic and Applied Immunology (NIBA), Federal University of Maranhão, São Luís, Maranhão, Brazil
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Albacar M, Casamayor A, Ariño J. Harnessing alkaline-pH regulatable promoters for efficient methanol-free expression of enzymes of industrial interest in Komagataella Phaffii. Microb Cell Fact 2024; 23:99. [PMID: 38566096 PMCID: PMC10985989 DOI: 10.1186/s12934-024-02362-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Accepted: 03/11/2024] [Indexed: 04/04/2024] Open
Abstract
BACKGROUND The yeast Komagataella phaffii has become a very popular host for heterologous protein expression, very often based on the use of the AOX1 promoter, which becomes activated when cells are grown with methanol as a carbon source. However, the use of methanol in industrial settings is not devoid of problems, and therefore, the search for alternative expression methods has become a priority in the last few years. RESULTS We recently reported that moderate alkalinization of the medium triggers a fast and wide transcriptional response in K. phaffii. Here, we present the utilization of three alkaline pH-responsive promoters (pTSA1, pHSP12 and pPHO89) to drive the expression of a secreted phytase enzyme by simply shifting the pH of the medium to 8.0. These promoters offer a wide range of strengths, and the production of phytase could be modulated by adjusting the pH to specific values. The TSA1 and PHO89 promoters offered exquisite regulation, with virtually no enzyme production at acidic pH, while limitation of Pi in the medium further potentiated alkaline pH-driven phytase expression from the PHO89 promoter. An evolved strain based on this promoter was able to produce twice as much phytase as the reference pAOX1-based strain. Functional mapping of the TSA1 and HSP12 promoters suggests that both contain at least two alkaline pH-sensitive regulatory regions. CONCLUSIONS Our work shows that the use of alkaline pH-regulatable promoters could be a useful alternative to methanol-based expression systems, offering advantages in terms of simplicity, safety and economy.
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Affiliation(s)
- Marcel Albacar
- Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain
| | - Antonio Casamayor
- Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain
| | - Joaquín Ariño
- Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain.
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Alias FL, Nezhad NG, Normi YM, Ali MSM, Budiman C, Leow TC. Recent Advances in Overexpression of Functional Recombinant Lipases. Mol Biotechnol 2023; 65:1737-1749. [PMID: 36971996 DOI: 10.1007/s12033-023-00725-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Accepted: 03/13/2023] [Indexed: 03/29/2023]
Abstract
Heterologous functional expression of the recombinant lipases is typically a bottleneck due to the expression in the insoluble fraction as inclusion bodies (IBs) which are in inactive form. Due to the importance of lipases in various industrial applications, many investigations have been conducted to discover suitable approaches to obtain functional lipase or increase the expressed yield in the soluble fraction. The utilization of the appropriate prokaryotic and eukaryotic expression systems, along with the suitable vectors, promoters, and tags, has been recognized as a practical approach. One of the most powerful strategies to produce bioactive lipases is using the molecular chaperones co-expressed along with the target protein's genes into the expression host to produce the lipase in soluble fraction as a bioactive form. The refolding of expressed lipase from IBs (inactive) is another practical strategy which is usually carried out through chemical and physical methods. Based on recent investigations, the current review simultaneously highlights strategies to express the bioactive lipases and recover the bioactive lipases from the IBs in insoluble form.
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Affiliation(s)
- Fatin Liyana Alias
- Enzyme and Microbial Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Nima Ghahremani Nezhad
- Enzyme and Microbial Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Yahaya M Normi
- Enzyme and Microbial Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Mohd Shukuri Mohamad Ali
- Enzyme and Microbial Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Cahyo Budiman
- Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, 88400, Kota Kinabalu, Sabah, Malaysia
| | - Thean Chor Leow
- Enzyme and Microbial Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia.
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
- Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia.
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Ng AMJ, Zhang H, Nguyen GKT. Zymography for Picogram Detection of Lipase and Esterase Activities. Molecules 2021; 26:molecules26061542. [PMID: 33799781 PMCID: PMC7998489 DOI: 10.3390/molecules26061542] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 03/09/2021] [Accepted: 03/09/2021] [Indexed: 12/03/2022] Open
Abstract
Lipases and esterases are important catalysts with wide varieties of industrial applications. Although many methods have been established for detecting their activities, a simple and sensitive approach for picogram detection of lipolytic enzyme quantity is still highly desirable. Here we report a lipase detection assay which is 1000-fold more sensitive than previously reported methods. Our assay enables the detection of as low as 5 pg and 180 pg of lipolytic activity by direct spotting and zymography, respectively. Furthermore, we demonstrated that the detection sensitivity was adjustable by varying the buffering capacity, which allows for screening of both high and low abundance lipolytic enzymes. Coupled with liquid chromatography-mass spectrometry, our method provides a useful tool for sensitive detection and identification of lipolytic enzymes.
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Affiliation(s)
- Andre Mong Jie Ng
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 8 Medical Drive, Singapore 117596, Singapore;
- NUS Synthetic Biology for Clinical and Technological Innovation, Centre for Life Sciences, National University of Singapore, 14 Medical Drive, Singapore 117456, Singapore
- WIL@NUS Corporate Laboratory, Wilmar International Limited, Centre for Translational Medicine, 14 Medical Drive, Singapore 117599, Singapore;
| | - Hongfang Zhang
- WIL@NUS Corporate Laboratory, Wilmar International Limited, Centre for Translational Medicine, 14 Medical Drive, Singapore 117599, Singapore;
| | - Giang Kien Truc Nguyen
- WIL@NUS Corporate Laboratory, Wilmar International Limited, Centre for Translational Medicine, 14 Medical Drive, Singapore 117599, Singapore;
- Correspondence:
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Expression and characterization of a CALB-type lipase from Sporisorium reilianum SRZ2 and its potential in short-chain flavor ester synthesis. Front Chem Sci Eng 2020. [DOI: 10.1007/s11705-019-1889-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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