1
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da Silva GR, Gomes LR, Rocha HAO, Azevedo VAC, Peluco AC, Sommerfeld S, Dos Reis TFM, Ribeiro LNM, de Melo RT, Fonseca BB. Development of a safe formulation that induces biofilm formation in probiotic bacteria for controlling Salmonella enteriditis Heidelberg and avian pathogenic Escherichia coli in wood shavings. Br Poult Sci 2025:1-10. [PMID: 40314672 DOI: 10.1080/00071668.2025.2486699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 02/14/2025] [Indexed: 05/03/2025]
Abstract
1. The aim of this study was to develop a formulation that stimulated the spontaneous formation of biofilms by probiotic bacteria, specifically Bacillus velezensis (BV), Bacillus subtilis (BS), or Lactococcus lactis subspecies lactis (LL) for control of Salmonella enteriditis Heidelberg (SH) and avian pathogenic E. coli (APEC).2. A formulation was developed to induce spontaneous biofilm formation of probiotic bacteria (BV, BS and LL) by testing various media containing minerals and polymers on polystyrene plates. The most potent probiotic strains were identified based on their efficacy in inhibiting SH and APEC. The formulation was tested on wood shavings to hinder APEC and SH. The safety and colonisation of the formulation was assessed in chicken embryos (CE) from 19 d of incubation to the broiler chicken stage.3. After evaluating various media, one containing calcium, magnesium, iron and polymers (dextran, chitosan and xylan) was selected. Notably, xylan, a highly sustainable biopolymer, showed outstanding results at a low concentration (27 µg/ml), which led to its selection for conducting inhibition tests on wood shavings against SH and APEC. The B. velezensis demonstrated superior biofilm formation and efficacy in controlling SH and APEC. Consequently, a BV strain was selected and associated with a strain of LL.4. While drying the formulation, maltodextrin was added and the biofilm formed by BV01 and LLL01 on wood shavings could control both SH and APEC species, reducing them by approximately 92.64 to 99.42%. Inoculating the formulation in CE did not result in a delay in hatching, injury, or death for either the CE or chicks. The probiotic bacteria multiplied and colonised the intestine of CE.5. This work successfully developed a formulation that induced spontaneous biofilm formation in BV and LL, significantly controlling SH and APEC while ensuring safety for birds.
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Affiliation(s)
- G R da Silva
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
| | - L R Gomes
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
| | - H A O Rocha
- Department of Biochemistry, Federal University of Rio Grande do Norte, Natal, Brazil
| | - V A C Azevedo
- Department of Genetics, Ecology and Evolution, Federal University of Minas Gerais, Belo Horizonte, Brazil
- Programa de Pós Graduação em Ciência animal nos trópicos, Federal University of Bahia, Salvador, Brazil
| | - A C Peluco
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
| | - S Sommerfeld
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
| | - T F M Dos Reis
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
| | - L N M Ribeiro
- Postgraduate Program in Genetics and Biochemistry, Federal University of Uberlandia, Uberlândia, Brazil
| | - R T de Melo
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
| | - B B Fonseca
- Faculty of Veterinary Medicine, Federal University of Uberlandia, Uberlândia, Brazil
- Postgraduate Program in Genetics and Biochemistry, Federal University of Uberlandia, Uberlândia, Brazil
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2
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Huynh U, King J, Zastrow ML. Calcium modulates growth and biofilm formation of Lactobacillus acidophilus ATCC 4356 and Lactiplantibacillus plantarum ATCC 14917. Sci Rep 2025; 15:14246. [PMID: 40274962 PMCID: PMC12022101 DOI: 10.1038/s41598-025-98577-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Accepted: 04/14/2025] [Indexed: 04/26/2025] Open
Abstract
Lactobacillaceae are a large, diverse family of Gram-positive lactic acid-producing bacteria. As gut microbiota residents in many mammals, these bacteria are beneficial for health and frequently used as probiotics. Lactobacillaceae abundance in the gastrointestinal tract has been correlated with gastrointestinal pathologies and infection. Microbiota residents must compete for nutrients, including essential metal ions like calcium, zinc, and iron. Recent animal and human studies have revealed that dietary calcium can positively influence the diversity of the gut microbiota and abundance of intestinal Lactobacillaceae species, but the underlying molecular mechanisms remain poorly understood. Here, we investigated the impacts of calcium on the growth and biofilm formation of two distinct Lactobacillaceae species found in the gut microbiota, Lactobacillus acidophilus ATCC 4356 and Lactiplantibacillus plantarum ATCC 14917. We found that calcium ions differentially affect both growth and biofilm formation of these species. In general, calcium supplementation promotes the growth of both species, albeit with some variations in the extent to which different growth parameters were impacted. Calcium ions strongly induce biofilm formation of L. acidophilus ATCC 4356 but not L. plantarum ATCC 14917. Based on bioinformatic analyses and experimental chelator studies, we hypothesize that surface proteins specific to L. acidophilus ATCC 4356, like S-layer proteins, are responsible for Ca2+-induced biofilm formation. The ability of bacteria to form biofilms has been linked with their ability to colonize in the gut microbiota. This work shows how metal ions like Ca2+ may be important not just as nutrients for bacteria growth, but also for their ability to facilitate cell-cell interactions and possibly colonization in the gut microbiota.
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Affiliation(s)
- Uyen Huynh
- Department of Chemistry, University of Houston, 3585 Cullen Blvd, Houston, TX, 77204, USA
| | - John King
- Department of Chemistry, University of Houston, 3585 Cullen Blvd, Houston, TX, 77204, USA
| | - Melissa L Zastrow
- Department of Chemistry, University of Houston, 3585 Cullen Blvd, Houston, TX, 77204, USA.
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3
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Chess MM, Foley S, Ettensohn CA. Horizontal Transfer of msp130 Genes and the Evolution of Metazoan Biocalcification. Genome Biol Evol 2025; 17:evaf028. [PMID: 39960859 PMCID: PMC11878542 DOI: 10.1093/gbe/evaf028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/16/2025] [Indexed: 03/06/2025] Open
Abstract
The formation of calcified skeletons is crucial for the development, physiology, and ecology of many marine metazoans. The evolutionary origins of the genetic toolkit required for biocalcification are widely debated. MSP130 proteins, originally identified through their expression specifically by sea urchin skeletal cells, have been hypothesized to have been acquired by metazoans from bacteria through horizontal gene transfer. Here, we provide support for a horizontal gene transfer-based origin of metazoan MSP130 proteins by conducting phylogenetic and in silico protein analyses utilizing high-quality genomes. We show that msp130 genes underwent duplications within almost all biocalcifying bilaterian phyla and identify highly conserved intron-exon junctions specific to bilaterian msp130 genes. The absence of MSP130 proteins in calcifying, nonbilaterian metazoans and other basal eukaryotes suggests that an ancestral msp130 gene underwent a horizontal gene transfer event that predates bilaterians, but not metazoans. We report striking structural similarities between bilaterian and bacterial MSP130 proteins, with each containing a seven-bladed, barrel-like motif that encompasses a choice-of-anchor domain, and identify highly conserved, predicted Ca2+-binding sites associated with the barrels. These findings point to a conserved, ancient function for MSP130 proteins in biocalcification and support the view that lateral transfer of bacterial genes supported the appearance of calcified animal skeletons.
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Affiliation(s)
- Macie M Chess
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Saoirse Foley
- Department of Biology, Marian University, Indianapolis, IN, USA
| | - Charles A Ettensohn
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA
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4
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Wong PY, Mal J, Sandak A, Luo L, Jian J, Pradhan N. Advances in microbial self-healing concrete: A critical review of mechanisms, developments, and future directions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 947:174553. [PMID: 38972424 PMCID: PMC11299504 DOI: 10.1016/j.scitotenv.2024.174553] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/26/2024] [Accepted: 07/04/2024] [Indexed: 07/09/2024]
Abstract
The self-healing bioconcrete, or bioconcrete as concrete containing microorganisms with self-healing capacities, presents a transformative strategy to extend the service life of concrete structures. This technology harnesses the biological capabilities of specific microorganisms, such as bacteria and fungi, which are integral to the material's capacity to autonomously mend cracks, thereby maintaining structural integrity. This review highlights the complex biochemical pathways these organisms utilize to produce healing compounds like calcium carbonate, and how environmental parameters, such as pH, temperature, oxygen, and moisture critically affect the repair efficacy. A comprehensive analysis of recently published peer-reviewed literature, and contemporary experimental research forms the backbone of this review with a focus on microbiological aspects of the self-healing process. The review assesses the challenges facing self-healing bioconcrete, including the longevity of microbial spores and the cost implications for large-scale implementation. Further, attention is given to potential research directions, such as investigating alternative biological agents and optimizing the concrete environment to support microbial activity. The culmination of this investigation is a call to action for integrating self-healing bioconcrete in construction on a broader scale, thereby realizing its potential to fortify infrastructure resilience and sustainability.
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Affiliation(s)
- Pui Yan Wong
- Department of Biology, Faculty of Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong Special Administrative Region
| | - Joyabrata Mal
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj 211004, Uttar Pradesh, India
| | - Anna Sandak
- InnoRenew CoE, Livade 6a, 6310 Izola, Slovenia; Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Glagoljaška 8, 6000 Koper, Slovenia; Andrej Marušič Institute, University of Primorska, Titov trg 4, 6000 Koper, Slovenia
| | - Lijun Luo
- Department of Biology, Faculty of Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong Special Administrative Region
| | - Jianxiong Jian
- Department of Biology, Faculty of Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong Special Administrative Region
| | - Nirakar Pradhan
- Department of Biology, Faculty of Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong Special Administrative Region.
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5
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Povolotsky TL, Levy Barazany H, Shacham Y, Kolodkin-Gal I. Bacterial epigenetics and its implication for agriculture, probiotics development, and biotechnology design. Biotechnol Adv 2024; 75:108414. [PMID: 39019123 DOI: 10.1016/j.biotechadv.2024.108414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Revised: 07/12/2024] [Accepted: 07/13/2024] [Indexed: 07/19/2024]
Abstract
In their natural habitats, organisms encounter numerous external stimuli and must be able to sense and adapt to those stimuli to survive. Unlike mutations, epigenetic changes do not alter the underlying DNA sequence. Instead, they create modifications that promote or silence gene expression. Bacillus subtilis has long been a model organism in studying genetics and development. It is beneficial for numerous biotechnological applications where it is included as a probiotic, in fermentation, or in bio-concrete design. This bacterium has also emerged recently as a model organism for studying bacterial epigenetic adaptation. In this review, we examine the evolving knowledge of epigenetic regulation (restriction-modification systems (RM), orphan methyltransferases, and chromosome condensation) in B. subtilis and related bacteria, and utilize it as a case study to test their potential roles and future applications in genetic engineering and microbial biotechnology. Finally, we suggest how the implementation of these fundamental findings promotes the design of synthetic epigenetic memory circuits and their future applications in agriculture, medicine, and biotechnology.
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Affiliation(s)
- Tatyana L Povolotsky
- Institute for Chemistry and Biochemistry, Physical and Theoretical Chemistry, Freie Universität Berlin, Altensteinstraße 23A, 14195 Berlin, Germany
| | - Hilit Levy Barazany
- Scojen Institute for Synthetic Biology, Reichman University, Hauniversita 8, Herzeliya, Israel
| | - Yosi Shacham
- Scojen Institute for Synthetic Biology, Reichman University, Hauniversita 8, Herzeliya, Israel
| | - Ilana Kolodkin-Gal
- Scojen Institute for Synthetic Biology, Reichman University, Hauniversita 8, Herzeliya, Israel.
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6
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Guo Z, Feng Q, Guo N, Yin Y, Liu T. Positive effects of molybdenum on the biomineralization process on the surface of low-alloy steel catalyzed by Bacillus subtilis. Front Microbiol 2024; 15:1428286. [PMID: 39282563 PMCID: PMC11401046 DOI: 10.3389/fmicb.2024.1428286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Accepted: 08/19/2024] [Indexed: 09/19/2024] Open
Abstract
The adhesion of microorganisms and the subsequent formation of mineralized layers in biofilms are of great significance in inhibiting the corrosion of metal materials. In this work, we found that the adhesion and subsequent mineralization of Bacillus subtilis on the surface of low-alloy steel are influenced by the molybdenum in the material. The addition of molybdenum will lead to increased adhesion of B. subtilis on the material surface, and the subsequent biomineralization ability has also been improved. Through transcriptome and physiological and biochemical tests, we found that molybdenum can affect the chemotaxis, mobility and carbonic anhydrase secretion related genes of B. subtilis, and then affect the formation and mineralization of the biofilm of B. subtilis.
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Affiliation(s)
- Zhangwei Guo
- College of Ocean Science and Engineering, Shanghai Maritime University, Shanghai, China
| | - Qun Feng
- College of Ocean Science and Engineering, Shanghai Maritime University, Shanghai, China
| | - Na Guo
- College of Ocean Science and Engineering, Shanghai Maritime University, Shanghai, China
| | - Yansheng Yin
- Engineering Technology Research Center for Corrosion Control and Protection of Materials in Extreme Marine Environment, Guangzhou Maritime University, Guangzhou, China
| | - Tao Liu
- College of Ocean Science and Engineering, Shanghai Maritime University, Shanghai, China
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7
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Hu P, Sharaby Y, Gu J, Radian A, Lang‐Yona N. Environmental processes and health implications potentially mediated by dust-borne bacteria. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13222. [PMID: 38151778 PMCID: PMC10866058 DOI: 10.1111/1758-2229.13222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 11/29/2023] [Indexed: 12/29/2023]
Abstract
Understanding microbial migration and survival mechanisms in dust events (DEs) can elucidate genetic and metabolic exchange between environments and help predict the atmospheric pathways of ecological and health-related microbial stressors. Dust-borne microbial communities have been previously characterized, but the impact and interactions between potentially active bacteria within transported communities remain limited. Here, we analysed samples collected during DEs in Israel, using amplicon sequencing of the 16S rRNA genes and transcripts. Different air trajectories and wind speeds were associated not only with the genomic microbial community composition variations but also with specific 16S rRNA bacterial transcripts. Potentially active dust-borne bacteria exhibited positive interactions, including carbon and nitrogen cycling, biotransformation of heavy metals, degradation of organic compounds, biofilm formation, and the presence of pathogenic taxa. This study provides insights into the potential interactive relationships and survival strategies of microorganisms within the extreme dust environment.
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Affiliation(s)
- Pengfei Hu
- Civil and Environmental EngineeringTechnion—Israel Institute of TechnologyHaifaIsrael
- Environmental Science and Engineering Research GroupGuangdong Technion—Israel Institute of TechnologyShantouGuangdongChina
| | - Yehonatan Sharaby
- Civil and Environmental EngineeringTechnion—Israel Institute of TechnologyHaifaIsrael
- Present address:
Department of Biology and EnvironmentUniversity of HaifaOranimTivonIsrael
| | - Ji‐Dong Gu
- Environmental Science and Engineering Research GroupGuangdong Technion—Israel Institute of TechnologyShantouGuangdongChina
- Guangdong Provincial Key Laboratory of Materials and Technologies for Energy ConversionGuangdong Technion—Israel Institute of TechnologyShantouGuangdongChina
| | - Adi Radian
- Civil and Environmental EngineeringTechnion—Israel Institute of TechnologyHaifaIsrael
| | - Naama Lang‐Yona
- Civil and Environmental EngineeringTechnion—Israel Institute of TechnologyHaifaIsrael
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8
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Zalewska J, Vivcharenko V, Belcarz A. Gypsum-Related Impact on Antibiotic-Loaded Composite Based on Highly Porous Hydroxyapatite-Advantages and Disadvantages. Int J Mol Sci 2023; 24:17178. [PMID: 38139007 PMCID: PMC10742761 DOI: 10.3390/ijms242417178] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 11/28/2023] [Accepted: 12/03/2023] [Indexed: 12/24/2023] Open
Abstract
Highly porous hydroxyapatite is sometimes considered toxic and useless as a biomaterial for bone tissue regeneration because of the high adsorption of calcium and phosphate ions from cell culture media. This negatively affects the osteoblast's growth in such ion-deprived media and suggests "false cytotoxicity" of tested hydroxyapatite. In our recent study, we showed that a small addition of calcium sulfate dihydrate (CSD) may compensate for this adsorption without a negative effect on other properties of hydroxyapatite-based biomaterials. This study was designed to verify whether such CSD-supplemented biomaterials may serve as antibiotic carriers. FTIR, roughness, mechanical strength analysis, drug release, hemocompatibility, cytotoxicity against human osteoblasts, and antibacterial activity were evaluated to characterize tested biomaterials. The results showed that the addition of 1.75% gypsum and gentamicin caused short-term calcium ion compensation in media incubated with the composite. The combination of both additives also increased antibacterial activity against bacteria representative of bone infections without affecting osteoblast proliferation, hemocompatibility, and mechanical parameters. Thus, gypsum and antibiotic supplementation may provide advanced functionality for bone-regeneration materials based on hydroxyapatite of a high surface area and increasingly high Ca2+ sorption capacity.
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Affiliation(s)
- Justyna Zalewska
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Chodzki 1, 20-093 Lublin, Poland;
| | - Vladyslav Vivcharenko
- Independent Unit of Tissue Engineering and Regenerative Medicine, Chair of Biomedical Sciences, Medical University of Lublin, Chodzki 1, 20-093 Lublin, Poland;
| | - Anna Belcarz
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Chodzki 1, 20-093 Lublin, Poland;
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9
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Kolodkin-Gal I, Parsek MR, Patrauchan MA. The roles of calcium signaling and calcium deposition in microbial multicellularity. Trends Microbiol 2023; 31:1225-1237. [PMID: 37429751 PMCID: PMC10772221 DOI: 10.1016/j.tim.2023.06.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 06/07/2023] [Accepted: 06/12/2023] [Indexed: 07/12/2023]
Abstract
Calcium signaling is an essential mediator of signal-controlling gene expression in most developmental systems. In addition, calcium has established extracellular functions as a structural component of biogenic minerals found in complex tissues. In bacteria, the formation of calcium carbonate structures is associated with complex colony morphology. Genes promoting the formation of biogenic minerals are essential for proper biofilm development and protection against antimicrobial solutes and toxins. Here we review recent findings on the role of calcium and calcium signaling as emerging regulators of biofilm formation in beneficial bacteria, as well as essential mediators of biofilm formation and virulence in human pathogens. The presented analysis concludes that the new understanding of calcium signaling may help to improve the performance of beneficial strains for sustainable agriculture, microbiome manipulation, and sustainable construction. Unraveling the roles of calcium may also promote the development of novel therapies against biofilm infections that target calcium uptake, calcium sensors, and calcium carbonate deposition.
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Affiliation(s)
- Ilana Kolodkin-Gal
- Department of Plant Pathology and Microbiology, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.
| | - Matthew R Parsek
- Department of Microbiology, University of Washington, Seattle, WA, USA.
| | - Marianna A Patrauchan
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA.
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10
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Aqsa, Qurashi AW, Moqaddes S. Microbial bio-film calcite mediated removal of heavy metals from industrial wastewater of Kasur, Pakistan. J Basic Microbiol 2023; 63:986-995. [PMID: 37404052 DOI: 10.1002/jobm.202300232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 06/10/2023] [Accepted: 06/13/2023] [Indexed: 07/06/2023]
Abstract
Heavy metals in the industrial wastewater are an area of great concern as act as source of bioaccumulation in edible plants and posing a major health risk to humans like cancers. This study was planned by exploiting the bio-film producing microbes that have the potential to remediate heavy metals by calcite mediated removal from industrial wastewater. Samples (n = 10) from a marble factory wastewater were collected. Samples were serially diluted and were spread on nutrient agar media supplemented with 2% urea and 0.28 g calcium chloride. All the isolates were observed for colony morphology, gram staining, and spore staining, for biochemical profile and for their efficacy in producing calcium carbonate crystals. All isolates showed cell densities at varying metal (chromium) concentrations ranging from 100 to 500 µg/mL. Determination of biofilm formation is performed by recording Optical density (OD = 600 nm). Normalized biofilm (570/600 nm) was formed. Different concentrations of chromium were used to measure their reduction ability and also by using tannery water. In tannery wastewater, significant reduction was recorded (p = 0.05) by AS4 bacterial isolate as compared to rest of the isolates and treatments. It showed remarkable chromium VI reduction ability.
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Affiliation(s)
- Aqsa
- Department of Biology, Lahore Garrison University, Lahore, Pakistan
| | - Aisha W Qurashi
- Department of Biology, Lahore Garrison University, Lahore, Pakistan
| | - Sidra Moqaddes
- Department of Biology, Lahore Garrison University, Lahore, Pakistan
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11
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Sharipova M, Rudakova N, Mardanova A, Evtugyn V, Akosah Y, Danilova I, Suleimanova A. Biofilm Formation by Mutant Strains of Bacilli under Different Stress Conditions. Microorganisms 2023; 11:1486. [PMID: 37374988 PMCID: PMC10302059 DOI: 10.3390/microorganisms11061486] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 05/27/2023] [Accepted: 05/31/2023] [Indexed: 06/29/2023] Open
Abstract
Bacillus subtilis is traditionally classified as a PGPR that colonizes plant roots through biofilm formation. The current study focused on investigating the influence of various factors on bacilli biofilm formation. In the course of the study, the levels of biofilm formation by the model strain B. subtilis WT 168 and on its basis created regulatory mutants, as well as strains of bacilli with deleted extracellular proteases under conditions of changes in temperature, pH, salt and oxidative stress and presence of divalent metals ions. B. subtilis 168 forms halotolerant and oxidative stress-resistant biofilms at a temperature range of 22 °C-45 °C and a pH range of 6-8.5. The presence of Ca2+, Mn2+ and Mg2+ upsurges the biofilm development while an inhibition with Zn2+. Biofilm formation level was higher in protease-deficient strains. Relative to the wild-type strain, degU mutants showed a decrease in biofilm formation, abrB mutants formed biofilms more efficiently. spo0A mutants showed a plummeted film formation for the first 36 h, followed by a surge after. The effect of metal ions and NaCl on the mutant biofilms formation is described. Confocal microscopy indicated that B. subtilis mutants and protease-deficient strains differ in matrix structure. The highest content of amyloid-like proteins in mutant biofilms was registered for degU-mutants and protease-deficient strains.
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Affiliation(s)
- Margarita Sharipova
- Institute of Fundamental Medicine, Kazan Federal University, Kremlevskaya St. 18, 420008 Kazan, Russia; (A.M.)
| | - Natalia Rudakova
- Institute of Fundamental Medicine, Kazan Federal University, Kremlevskaya St. 18, 420008 Kazan, Russia; (A.M.)
| | - Ayslu Mardanova
- Institute of Fundamental Medicine, Kazan Federal University, Kremlevskaya St. 18, 420008 Kazan, Russia; (A.M.)
| | - Vladimir Evtugyn
- Interdisciplinary Center of Analytical Microscopy, Kazan Federal University, Paris Commune St. 9, 420008 Kazan, Russia
| | - Yaw Akosah
- Department of Molecular Pathology, NYU College of Dentistry, 345 E. 24th Street, New York, NY 10010, USA
| | - Iuliia Danilova
- Institute of Fundamental Medicine, Kazan Federal University, Kremlevskaya St. 18, 420008 Kazan, Russia; (A.M.)
| | - Aliya Suleimanova
- Institute of Fundamental Medicine, Kazan Federal University, Kremlevskaya St. 18, 420008 Kazan, Russia; (A.M.)
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12
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Abstract
Living systems are built from a small subset of the atomic elements, including the bulk macronutrients (C,H,N,O,P,S) and ions (Mg,K,Na,Ca) together with a small but variable set of trace elements (micronutrients). Here, we provide a global survey of how chemical elements contribute to life. We define five classes of elements: those that are (i) essential for all life, (ii) essential for many organisms in all three domains of life, (iii) essential or beneficial for many organisms in at least one domain, (iv) beneficial to at least some species, and (v) of no known beneficial use. The ability of cells to sustain life when individual elements are absent or limiting relies on complex physiological and evolutionary mechanisms (elemental economy). This survey of elemental use across the tree of life is encapsulated in a web-based, interactive periodic table that summarizes the roles chemical elements in biology and highlights corresponding mechanisms of elemental economy.
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Affiliation(s)
- Kaleigh A Remick
- Department of Microbiology, Cornell University, New York, NY, United States
| | - John D Helmann
- Department of Microbiology, Cornell University, New York, NY, United States.
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13
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Effect of Calcium Ion Supplementation on Oral Microbial Composition and Biofilm Formation In Vitro. Microorganisms 2022; 10:microorganisms10091780. [PMID: 36144381 PMCID: PMC9500923 DOI: 10.3390/microorganisms10091780] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/25/2022] [Accepted: 08/31/2022] [Indexed: 11/17/2022] Open
Abstract
The oral cavity contains a variety of ecological niches with very different environmental conditions that shape biofilm structure and composition. The space between the periodontal tissue and the tooth surface supports a unique anaerobic microenvironment that is bathed in the nutrient-rich gingival crevicular fluid (GCF). During the development of periodontitis, this environment changes and clinical findings reported a sustained level of calcium ion concentration in the GCF collected from the periodontal pockets of periodontitis patients. Here, we report the effect of calcium ion supplementation on human oral microbial biofilm formation and community composition employing an established SHI medium-based in vitro model system. Saliva-derived human microbial biofilms cultured in calcium-supplemented SHI medium (SHICa) exhibited a significant dose-dependent increase in biomass and metabolic activity. The effect of SHICa medium on the microbial community composition was evaluated by 16S rRNA gene sequencing using saliva-derived microbial biofilms from healthy donors and periodontitis subjects. In this study, intracellular microbial genomic DNA (iDNA) and extracellular DNA (eDNA) were analyzed separately at the genus level. Calcium supplementation of SHI medium had a differential impact on iDNA and eDNA in the biofilms derived from healthy individuals compared to those from periodontitis subjects. In particular, the genus-level composition of the eDNA portion was distinct between the different biofilms. This study demonstrated the effect of calcium in a unique microenvironment on oral microbial complex supporting the dynamic transformation and biofilm formation.
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