Enhanced "contact mechanism" for interaction of extracellular polymeric substances with low-grade copper-bearing sulfide ore in bioleaching by moderately thermophilic Acidithiobacillus caldus

Assessing microbial diversity in open-pit mining: Metabarcoding analysis of soil and pit microbiota across operational and restoration stages

Mine closure operations aim to restore the ecosystem to a near-original state. Microorganisms are indispensable for soil equilibrium and restoration. Metabarcoding was employed to characterize the bacterial and fungal composition in pristine soils, stockpiled soils (topsoils), enriched stockpiled soils (technosoils), enriched and revegetated soils (revegetated technosoils), and pit ecosystems in an open pit gold mine. Chao1 analysis revealed highest richness in pristine and topsoils, followed by technosoils (-17.5%) and pits (-63%). Bacterial diversity surpassed fungal diversity (-40%) in soil samples, but fungal OTUs were more abundant in pit samples (+73.4%). The findings identified the dominant microbial communities and conducted a comparative analysis of the shared microbiota. Dominant genera differed notably between pristine, topsoil, and technosoil samples for bacteria and fungi. The ecological indices' results indicated that the pristine soil microbial communities were distinct from those in the topsoils, revealing significant alterations during the stockpiling process. The revegetated technosoil showed more similarity to the pristine and topsoil samples than to the freshly prepared technosoil, suggesting that microbial restoration is an ongoing phenomenon. Microbial restoration analysis revealed that Bacterial communities recover faster than fungal communities highlighting the potential of managing technosoil physicochemical parameters to enhance microbial recovery similar to those found in pristine soils. Runoff water contribute to this rebalancing by transporting microorganisms between ecosystem. All pit samples exhibited significant differences in their microbial composition, with moisture and rock composition representing the primary axes of dissimilarity. The greater community complexity observed in soils is related to the availability of nutrients, physicochemical variations, and the possibility of interaction with other microbes. Pits represent extreme ecosystems that limit the growth of most microorganisms. The presented research provides a scientific basis for future restoration strategies to improve microbial diversity and ecosystem resilience in altered landscapes.

A novelty strategy for AMD prevention by biogas slurry: Acetate acid inhibition effect on chalcopyrite biooxidation and leachate

With the widespread application of anaerobic digestion technology, biogas slurry become the main source of organic amendments in practice. Comprehensive studies into the inhibitory effects of low molecular weight (LMW) organic acids, essential components in biogas slurry, on the sulfide minerals biooxidation and its bioleaching (AMD) have been lacking. In this study, acetic acid (AA) served as a representative of LMW organic acids in biogas slurry to investigate its impact on the inhibition of chalcopyrite biooxidation by Acidithiobacillus ferrooxidans (A. ferrooxidans). It was shown that AA could slow down the chalcopyrite biooxidation and inhibit the jarosite formation on the mineral surface. Compared with the control group (0 ppm AA), the sulfate increment in the leachate of the 50 ppm, 100 ppm, and 200 ppm AA-treated groups decreased by 36.4%, 66.8%, and 69.0%, respectively. AA treatment (≥50 ppm) could reduce the oxidation of ferrous ions in the leachate by one order of magnitude. At the same time, the bacterial concentration of the leachate in the 50 ppm, 100 ppm, and 200 ppm AA-treated groups decreased by 70%, 93%, and 94%, respectively. These findings provide a scientific basis for new strategies to utilize biogas slurry for mine remediation and contribute to an enhanced comprehension of organic amendments to prevent AMD in situ in mining soil remediation.

Research on the decomposition mechanisms of lithium silicate ores with different crystal structures by autotrophic and heterotrophic bacteria

Ores serve as energy and nutrient sources for microorganisms. Through complex biochemical processes, microorganisms disrupt the surface structure of ores and release metal elements. However, there is limited research on the mechanisms by which bacteria with different nutritional modes act during the leaching process of different crystal structure ores. This study evaluated the leaching efficiency of two types of bacteria with different nutritional modes, heterotrophic bacterium Bacillus mucilaginosus (BM) and autotrophic bacterium Acidithiobacillus ferrooxidans (AF), on different crystal structure lithium silicate ores (chain spodumene, layered lepidolite and ring elbaite). The aim was to understand the behavioral differences and decomposition mechanisms of bacteria with different nutritional modes in the process of breaking down distorted crystal lattices of ores. The results revealed that heterotrophic bacterium BM primarily relied on passive processes such as bacterial adsorption, organic acid corrosion, and the complexation of small organic acids and large molecular polymers with metal ions. Autotrophic bacterium AF, in addition to exhibiting stronger passive processes such as organic acid corrosion and complexation, also utilized an active transfer process on the cell surface to oxidize Fe2+ in the ores for energy maintenance and intensified the destruction of ore lattices. As a result, strain AF exhibited a greater leaching effect on the ores compared to strain BM. Regarding the three crystal structure ores, their different stacking modes and proportions of elements led to significant differences in structural stability, with the leaching effect being highest for layered structure, followed by chain structure, and then ring structure. These findings indicate that bacteria with different nutritional modes exhibit distinct physiological behaviors related to their nutritional and energy requirements, ultimately resulting in different sequences and mechanisms of metal ion release from ores after lattice damage.

Insights into the complementation potential of the extreme acidophile's orthologue in replacing Escherichia coli hfq gene-particularly in bacterial resistance to environmental stress

Acidithiobacillus caldus is a typical extreme acidophile widely used in the biohydrometallurgical industry, which often experiences extreme environmental stress in its natural habitat. Hfq, an RNA-binding protein, typically functions as a global regulator involved in various cellular physiological processes. Yet, the biological functions of Hfq derived from such extreme acidophile have not been extensively investigated. In this study, the recombinant strain Δhfq/Achfq, constructed by CRISPR/Cas9-mediated chromosome integration, fully or partially restored the phenotypic defects caused by hfq deletion in Escherichia coli, including impaired growth performance, abnormal cell morphology, impaired swarming motility, decreased stress resistance, decreased intracellular ATP and free amino acid levels, and attenuated biofilm formation. Particularly noteworthy, the intracellular ATP level and biofilm production of the recombinant strain were increased by 12.2% and 7.0%, respectively, compared to the Δhfq mutant. Transcriptomic analysis revealed that even under heterologous expression, AcHfq exerted global regulatory effects on multiple cellular processes, including metabolism, environmental signal processing, and motility. Finally, we established a potential working model to illustrate the regulatory mechanism of AcHfq in bacterial resistance to environmental stress.

Enhancing column bioleaching of chalcocite by isolated iron metabolism partners Leptospirillum ferriphilum/Acidiphilium sp. coupling with systematically utilizing cellulosic waste

The iron metabolism partners Leptospirillum ferriphilum and Acidiphilium sp. were screened from industrial bioheap site. An integrated multi-stage strategy was proposed to improve chalcolite column bioleaching coupling with synergistical utilization of cellulosic waste such as acid hydrolysate of aquatic plants. L. ferriphilum was used to accelerate the initial iron metabolism, and Acidithiobacillus caldus maintained a lower pH in the middle stage, while Acidiphilium sp. greatly inhibited jarosite passivation in the later stage. Meanwhile, L. ferriphilum (38.3 %) and Acidiphilium sp. (37.0 %) dominated the middle stage, while the abundance of Acidiphilium sp. reached 63.5 % in the later stage. The ferrous, sulfate ion and biomass were improved and the transcriptional levels of some biofilm and morphology related genes were significantly up-regulated. The final Cu2+ concentration reached 325.5 mg·L-1, improved by 43.8 %. Moreover, Canonical Correlation Analysis (CCA) analysis between bioleaching performance, iron/sulfur metabolism and community verified the important role of iron metabolism partners.

Improvement of gold bioleaching extraction from waste telecommunication printed circuit boards using biogenic thiosulfate by Acidithiobacillus thiooxidans

Cyanide usage in gold processing techniques has become increasingly challenging due to its toxicity and environmental impact. It is possible to develop environmentally friendly technology using thiosulfate because of its nontoxic characteristics. Thiosulfate production requires high temperatures, resulting in high greenhouse gas emissions and energy consumption. The biogenesized thiosulfate is an unstable intermediate product of Acidithiobacillus thiooxidans sulfur oxidation pathway to sulfate. A novel eco-friendly method was presented in this study to treat spent printed circuit boards (STPCBs) using biogenesized thiosulfate (Bio-Thio) obtained from Acidithiobacillus thiooxidans cultured medium. To obtain a preferable concentration of thiosulfate among other metabolites by limiting thiosulfate oxidation, optimal concentrations of inhibitor (NaN₃: 3.25 mg/L) and pH adjustments (pH= 6-7) were found to be effective. Selection of the optimal conditions has led to the highest bio-production of thiosulfate (500 mg/L). The impact of STPCBs content, ammonia, ethylenediaminetetraacetic acid (EDTA), and leaching time on Cu bio-dissolution and gold bio-extraction were investigated using enriched-thiosulfate spent medium. The suitable conditions were a pulp density of 5 g/L, an ammonia concentration of 1 M, and a leaching time of 36 h, which led to the highest selective extraction of gold (65 ± 0.78%).

The remediation of uranium-contaminated groundwater via bioreduction coupled to biomineralization with different pH and electron donors

Stimulating indigenous microbes to reduce aqueous U(VI) to insoluble U(IV) by adding an electron donor has been applied as an applicable strategy to remediate uranium-contaminated groundwater in situ. However, biogenic U(IV) minerals are susceptible to oxidative remobilization after exposure to oxygen. To enhance the stability of the end product, glycerol phosphate (GP) was selected to treat artificial uranium-containing groundwater at different pH values (i.e., 7.0 and 5.0) with glycerol (GY) as the control group. The results revealed that removal ratios of uranium with GP were all higher than those with GY, and reduced crystalline U(IV)-phosphate and U(VI)-phosphate minerals (recalcitrant to oxidative remobilization) were generated in the GP groups. Although bioreduction efficiency was influenced at pH 5.0, the stability of the end product with GP was elevated significantly compared with that with GY. Mechanism analysis demonstrated that GP could activate bioreduction and biomineralization of the microbial community, and two stages were included in the GP groups. In the early stage, bioreduction and biomineralization were both involved in the immobilization process. Subsequently, part of the U(VI) precipitate was gradually reduced to U(IV) precipitate by microorganisms. This work implied that the formation of U-phosphate minerals via bioreduction coupled with biomineralization potentially offers a more effective strategy for remediating uranium-contaminated groundwater with long-term stability.

Promising strategies of circular bioeconomy using heavy metal phytoremediated plants - A critical review

Phytoremediation is an excellent method for removing harmful heavy metals from the environment since it is eco-friendly, uses little energy, and is inexpensive. However, as phytoremediated plants can turn into secondary sources for heavy metals, complete heavy metal removal from phytoremediated plants is necessary. Elimination of toxic heavy metals from phytoremediated plants should be considered with foremost care. This review highlights about important sources of heavy metal contamination, health effects caused by heavy metal contamination and technological breakthroughs of phytoremediation. This review critically emphasis about promising strategies to be engaged for absolute reutilization of heavy metals and spectacular approaches of production of commercially imperative products from phytoremediated plants through circular bioeconomy with key barriers. Thus, phytoremediation combined with circular bioeconomy can create a new platform for the eco-friendly life.

Enhancement and mechanisms of micron-pyrite driven autotrophic denitrification with different pretreatments for treating organic-limited waters

Pyrite-driven autotrophic denitrification (PAD) represents a cheap and promising way for nitrogen removal from organic-limited wastewater, which has obtained increasing attention in recent years. However, the limited denitrification rate and unclear mechanism underlying the process have hindered the engineered application of PAD. This study aims to shed light on the impacts of different pretreatments (i.e., ultrasonication, acid-washing and calcination) on micron-pyrite surface characteristics, denitrification performance and biofilm formation during PAD in batch reactors. A series of solid-phase analyses revealed that all pretreatments could significantly promote biofilm attachment on pyrite granules, but impacted the proportion, distribution and chemical oxidation state of sulfur (S) and iron (Fe) at varying degrees. Batch tests showed that ultrasonication and acid-washing could enhance the total nitrogen reduction rate by 14% and 99%, and decrease the sulfate production rate by 51% and 42%, respectively, when compared with untreated pyrite. Microbial community analysis indicated that Thiobacillus and Rhodanobacter dominated in PAD systems. Two types of indirect mechanisms (i.e., contact and non-contact) for pyrite leaching may co-occur in PAD system, resulting in ferrous iron (Fe²⁺), thiosulfate (S₂O₃^2-) and sulfide (S^2-) as the main electron donors for denitrification. A PAD mechanism model was proposed to describe the PAD electron transfer pathway with the aim to optimize the engineered application of PAD for nitrogen removal.

Copper extraction from low-grade chalcopyrite in a bioleaching column assisted by bioelectrochemical system

Low-grade ores, tailings, and solid wastes contain small amounts of valuable heavy metals. Improper disposal of these substances results in the waste of resources and contamination of soil or groundwater. Accordingly, the treatment and recycling of low-grade ores, tailings, and solid wastes attracted much attention recently. Bioelectrochemical system, an innovative technology for the removal and recovery of heavy metals, has been further developed and applied in recent years. In the current study, the low-grade chalcopyrite was bioleached with the assistance of microbial fuel cells. Copper extraction along with electricity generation from the low-grade chalcopyrite was achieved in the column bioleaching process assisted by MFCs. Results showed that after 197 days bioleaching of low-grade chalcopyrite, 423.9 mg copper was extracted from 200 g low-grade chalcopyrite and the average coulomb production reached 1.75 C/d. The introduction of MFCs into bioleaching processes promoted the copper extraction efficiency by 2.7 times (3.62% vs. 1.33%), mainly via promoting ferrous oxidation, reducing ORP, and stimulating bacterial growth. This work provides a feasible method for the treatment and recycling of low-grade ores, tailings, and solid wastes. But balancing energy consumption of aeration and circulation frequency and chemical consumption of acid to improve the copper extraction efficiency need further investigation.

A designed moderately thermophilic consortia with a better performance for leaching high grade fine lead-zinc sulfide ore

Unwieldy fine sulfide ores are produced during mining; without being appropriately disposed of, they can cause environmental pollution and waste resources. This study investigated the leaching performance of a moderately thermophilic consortia (Leptospirillum ferriphilum + Acidithiobacillus caldus + Sulfobacillus benefaciens) for fine lead-zinc sulfide raw ore. The results showed this microbial community created a low pH, high ORP, and high cell concentration environment for mineral leaching, improving bioleaching efficiency. Under the action of this consortia, the zinc leaching rate reached 96.44 in 8 days, and reached 100% after 12 days. EPS analysis indicated that the consortia could mediate the secretion of more polysaccharides to ensure leaching efficiency. EPS levels and amino acids were the main factors affecting bioleaching. An analysis of mineral surface characteristics showed the consortia effectively leached pyrite and sphalerite from the fine sulfide ore, and prevented the mineral surface forming the jarosite that could hinder bioleaching. This study found that bioleaching reduced the potential environmental toxicity of the minerals, providing an important reference for guiding the bioleaching of unwieldy fine sulfide raw ore.

Effect of diurnal temperature range on bioleaching of sulfide ore by an artificial microbial consortium

Temperature is considered to be one of the main factors affecting bioleaching, but few studies have assessed the effects of diurnal temperature range (DTR) on the bioleaching process. This study investigates the effects of different bioleaching temperatures (30 and 40 °C) and DTR on the bioleaching of metal sulfide ores by microbial communities. The results showed that DTR had an obvious inhibitory effect on the bioleaching efficiency of the artificial microbial community, although this effect was mainly concentrated in the early and middle stages (0-18 days) of exposure, gradually decreasing until almost disappearing in the late stage (18-24 days). Extracellular polymeric substance (EPS) analysis showed that DTR did not change the composition of the EPS matrix (humic acid-like substances, polysaccharides and protein-like substances), but had a significant effect on the generative behavior of EPS, inhibiting the secretion of EPS during the early and middle stages of the bioleaching process. However, the continual increase in EPS secretion in the bioleaching system gradually reduced the adverse effects of DTR on mineral dissolution. X-ray diffraction (XRD), Fourier transform infrared (FTIR) and Scanning electron microscopy- energy dispersive spectrometry (SEM-EDS) analysis of the bioleached residue showed that DTR had no obvious effect on the mineralogical characteristics of sulfide ore. Therefore, in industrial sulfide ore bioleaching applications, in order to accelerate the artificial microbial community start-up process, temperature control measures should be increased in the bioleaching process to reduce the adverse effects of DTR on mineral dissolution.

The potentials of biofilm reactor as recourse for the recuperation of rare earth metals/elements from wastewater: a review

Wastewater is nowadays increasingly receiving global attention as a resource much more than a problem due to its potential so serve as a resource recovery channel. In this regard, wastewater is gradually been transformed from being a cesspool to a "treasure pool." Among notable resources in the treasure pool, rare earth metals/elements (REEs) warrant focal investigation, both in terms of environmental abundance and biorecovery, due to their environmental impacts. The ineffectiveness or cost intensiveness of extant physicochemical and advanced wastewater resource recovery techniques warrants the investigation of natural phenomenons in the treasure pools. Bacteria are able to cleverly secrete certain biochemicals to help trap and aggregate nutrients for their metabolism-the biofilms. In this regard, there is increased espousal of biofilm-enabled reactors, especially for the application of the recovery of invaluable feedstock in wastewater as well as other aqueous media due to high production rates and stability of cells. Furthermore, it anticipated that this technology will be translated to recovery of rare earth elements, due to their increased demand across the globe. This piece reiterates the nitty-gritty of biofilm-enhanced biorecovery and also keeps the scientific readership abreast of the multifarious aspects regarding the successful biofilm affected biorecovery of REEs at reactor scale.

Extremophilic Exopolysaccharides: Biotechnologies and Wastewater Remediation

Various microorganisms thrive under extreme environments, like hot springs, hydrothermal vents, deep marine ecosystems, hyperacid lakes, acid mine drainage, high UV exposure, and more. To survive against the deleterious effect of these extreme circumstances, they form a network of biofilm where exopolysaccharides (EPSs) comprise a substantial part. The EPSs are often polyanionic due to different functional groups in their structural backbone, including uronic acids, sulfated units, and phosphate groups. Altogether, these chemical groups provide EPSs with a negative charge allowing them to (a) act as ligands toward dissolved cations as well as trace, and toxic metals; (b) be tolerant to the presence of salts, surfactants, and alpha-hydroxyl acids; and (c) interface the solubilization of hydrocarbons. Owing to their unique structural and functional characteristics, EPSs are anticipated to be utilized industrially to remediation of metals, crude oil, and hydrocarbons from contaminated wastewaters, mines, and oil spills. The biotechnological advantages of extremophilic EPSs are more diverse than traditional biopolymers. The present review aims at discussing the mechanisms and strategies for using EPSs from extremophiles in industries and environment bioremediation. Additionally, the potential of EPSs as fascinating biomaterials to mediate biogenic nanoparticles synthesis and treat multicomponent water contaminants is discussed.

Simultaneously enhance iron/sulfur metabolism in column bioleaching of chalcocite by pyrite and sulfur oxidizers based on joint utilization of waste resource

In chalcocite (Cu₂S) bioleaching, the lack of iron metabolism is a key restricting factor. As the most common sulfide mineral, pyrite (FeS₂) can release Fe(Ⅱ) and compensate for the iron metabolism deficiency in chalcocite bioleaching. The bioleaching of chalcocite in an imitated industrial system was improved by enhancing the iron-sulfur metabolism simultaneously using pyrite and sulfur oxidizers based on the joint utilization of waste resources, while the bioleaching performance and community structure in the leachate were systematically investigated. Due to the active sulfur/iron metabolism, the pH reached 1.2, and Fe³⁺ was increased by 77.78%, while the biomass of planktonic cells was improved to 2.19 × 10⁷ cells/mL. Fourier transform infrared reflection (FTIR) and X-ray diffraction (XRD) analysis results showed that more iron-sulfur crystals were produced due to more active iron-sulfur metabolism. Scanning electron microscopy (SEM) revealed that many derivative particles and corrosion marks appeared on the surface of the ore, implying that the mineral-microbe interaction was strengthened. Confocal laser scanning microscopy (CLSM) showed the accumulation of cells and extracellular polymeric substances (EPS) on the ore surface, indicating a stronger contact leaching mechanism. Furthermore, the community structure and canonical correspondence analysis (CCA) demonstrated that the introduction of sulfur-oxidizing bacteria and pyrite could maintain the diversity of dominant leaching microorganisms at a high level. Sulfobacillus (27.75%) and Leptospirllillum (20.26%) were the dominant sulfur-oxidizing and iron-oxidizing bacteria during the bioleaching process. With the accumulation of multiple positive effects, the copper ion leaching rate was improved by 44.8%. In general, this new type of multiple intervention strategy can provide an important guide for the bioleaching of low-grade ores.

Anthraquinone-2,6-disulfonate enhanced biodegradation of dibutyl phthalate: Reducing membrane damage and oxidative stress in bacterial degradation

Plasticizer dibutyl phthalate (DBP) pollution has received more and more attention. In this study, a DBP degrading bacteria Enterobacter sp. DNB-S2 was found to suffer membrane damage and oxidative stress during DBP degradation. Physiological and transcriptome analysis showed that 100 μmol L^-1 anthraquinone-2,6-disulfonate (AQDS) could enhance the ability of strain DNB-S2 for biodegradation of DBP. AQDS adjusted the cell surface structure, including increase levels of hydrophobic and unsaturated fatty acids. These changes increased the chemotactic ability of the strain DNB-S2 to the hydrophobic pollutant DBP and the fluidity of the cell membrane. The expression of methyl chemotactic protein and genes associated with cell membrane-fixed components were up-regulated. AQDS also improved the scavenging ability of ·OH and H₂O₂ of DNB-S2 by promoting expression genes related to glutathione metabolism, thereby reducing oxidative stress. These results will provide new insights into the biodegradation of DBP.