1
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Yang J, Zhang T, Ma S, Shang J, Li L, Ning Y, Zhao X. Enhancing microplastic removal and nitrogen mitigation in constructed wetlands: An earthworm-centric perspective. JOURNAL OF HAZARDOUS MATERIALS 2025; 489:137540. [PMID: 39938366 DOI: 10.1016/j.jhazmat.2025.137540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Revised: 02/01/2025] [Accepted: 02/07/2025] [Indexed: 02/14/2025]
Abstract
The presence of microplastics (MPs) in wastewater poses significant threats to ecosystems. Although constructed wetlands (CWs) demonstrate effective removal of microplastics, their efficiency is often limited by various environmental variables and system equilibrium factors. This study introduces Eisenia fetida to enhance the ecological performance of constructed wetlands and improves their removal efficiency. The findings revealed that the addition of earthworms significantly increased the removal efficiencies of polylactic acid (PLA) microplastics, chemical oxygen demand, total nitrogen, and ammonium nitrogen, with respective improvements of 13.5 %, 8.4 %, 9.7 %, and 10.5 %, respectively. Notably, the ingestion of polylactic acid microplastics by earthworms led to a substantial increase in the abundance of microorganisms, such as Actinobacteria, that were associated with microplastic degradation. Furthermore, microbial communities involved in nitrogen cycling were notably enriched, with a 12.4 % increase in nitrogen-fixing microbes and a 4.3 % increase in nitrifying microbes. These findings suggested that earthworms, through the restructuring of their gut microbial communities, not only facilitated efficient polylactic acid degradation but also enhanced nitrogen cycling processes. This provides a novel ecological mechanism for improving pollutant management and nutrient recycling in constructed wetlands.
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Affiliation(s)
- Jinyi Yang
- College of Resource and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Tuoshi Zhang
- College of Resource and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Shengjun Ma
- College of Resource and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Jiacheng Shang
- College of Resource and Environment, Northeast Agricultural University, Harbin 150030, China
| | - Lixin Li
- School of Environment and Chemical Engineering, Heilongjiang University of Science and Technology, Harbin 150022, China
| | - Yucui Ning
- College of Resource and Environment, Northeast Agricultural University, Harbin 150030, China.
| | - Xinyue Zhao
- College of Resource and Environment, Northeast Agricultural University, Harbin 150030, China.
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2
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Heinks T, Hofmann K, Last S, Gamm I, Blach L, Wei R, Bornscheuer UT, Hamel C, von Langermann J. Selective Modification of the Product Profile of Biocatalytic Hydrolyzed PET via Product-Specific Medium Engineering. CHEMSUSCHEM 2025; 18:e202401759. [PMID: 39504305 PMCID: PMC11911963 DOI: 10.1002/cssc.202401759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2024] [Revised: 10/14/2024] [Accepted: 11/05/2024] [Indexed: 11/08/2024]
Abstract
Over the past years, enzymatic depolymerization of PET, one of the most widely used plastics worldwide, has become very efficient leading to the end products terephthalic acid (TPA) and ethylene glycol (EG) used for PET re-synthesis. Potent alternatives to these monomers are the intermediates BHET and MHET, the mono- and di-esters of TPA and EG which avoid total hydrolysis and can serve as single starting materials for direct re-polymerization. This study therefore aimed to selectively prepare those intermediates through reaction medium engineering during the biocatalytic hydrolysis of PET. After a comparative pre-screening of 12 PET-hydrolyzing enzymes, two of them (LCCICCG, IsPETasewt) were chosen for detailed investigations. Depending on the reaction conditions, MHET and BHET are predominantly obtainable: (i) MHET was produced in a better ratio and high concentrations at the beginning of the reaction when IsPETasewt and 10 % EG was used; (ii) BHET was produced as predominant product when LCCICCG and 25 % EG was used. TPA itself was nearly the single product at pH 9.0 after 24 h due to the self-hydrolysis of MHET and BHET under basic conditions. Using medium engineering in biocatalytic PET-hydrolysis, the product profile can be adjusted so that TPA, MHET or BHET is predominantly produced.
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Affiliation(s)
- Tobias Heinks
- Faculty of Process and Systems EngineeringInstitute of Chemistry, Biocatalytic SynthesisOtto von Guericke University of MagdeburgUniversitätsplatz 239106MagdeburgGermany
| | - Katrin Hofmann
- Department of Applied Biosciences and Process EngineeringAnhalt University of Applied SciencesBernburger Straße 5506366KoethenGermany
| | - Simon Last
- Faculty of Process and Systems EngineeringInstitute of Chemistry, Biocatalytic SynthesisOtto von Guericke University of MagdeburgUniversitätsplatz 239106MagdeburgGermany
| | - Igor Gamm
- Faculty of Process and Systems EngineeringInstitute of Process Engineering, Chemical Process EngineeringOtto von Guericke University of MagdeburgUniversitätsplatz 239106MagdeburgGermany
| | - Luise Blach
- Faculty of Process and Systems EngineeringInstitute of Process Engineering, Chemical Process EngineeringOtto von Guericke University of MagdeburgUniversitätsplatz 239106MagdeburgGermany
| | - Ren Wei
- Institute of BiochemistryDept. of Biotechnology & Enzyme CatalysisUniversity of GreifswaldFelix-Hausdorff-Str.417487GreifswaldGermany
| | - Uwe T. Bornscheuer
- Institute of BiochemistryDept. of Biotechnology & Enzyme CatalysisUniversity of GreifswaldFelix-Hausdorff-Str.417487GreifswaldGermany
| | - Christof Hamel
- Department of Applied Biosciences and Process EngineeringAnhalt University of Applied SciencesBernburger Straße 5506366KoethenGermany
- Faculty of Process and Systems EngineeringInstitute of Process Engineering, Chemical Process EngineeringOtto von Guericke University of MagdeburgUniversitätsplatz 239106MagdeburgGermany
| | - Jan von Langermann
- Faculty of Process and Systems EngineeringInstitute of Chemistry, Biocatalytic SynthesisOtto von Guericke University of MagdeburgUniversitätsplatz 239106MagdeburgGermany
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3
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Zhang Y, Lu J, Zhang XZ, Zhang ZZ, Jin RC. PHA Microplastic Aging Decreases N 2O Sink Capacity: Released γ-Butyrolactone Decouples Denitrifying Electron Transfer and Oxidative Phosphorylation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:1298-1307. [PMID: 39780534 DOI: 10.1021/acs.est.4c07717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2025]
Abstract
Bacterial denitrification is a main pathway for soil N2O sinks, which is crucial for assessing and controlling N2O emissions. Biobased polyhydroxyalkanoate (PHA) microplastic particles (MPs) degrade slowly in conventional environments, remaining inert for extended periods. However, the impacts of PHA microplastic aging on the bacterial N2O sink capacity before degradation remain poorly understood. Here, the soil model strain Paracoccus denitrificans was exposed to 0.05-0.5% (w/w) virgin and aged PHA MPs. Although no significant changes in the molecular weights were observed, aged PHA MPs hindered cell growth and N2O reduction rates, leading to a surge in N2O emissions. 1H NMR spectroscopy and UPLC-QTOF-MS analysis identified γ-butyrolactone as the key component released from aged PHA MPs. Metabolic verifications at the cellular level confirmed its inhibition on the N2O sink and ATP synthesis. The γ-butyrolactone that protonated and hydrolyzed spontaneously in the periplasm would compete for protons with ATPase and destroy the coupling between denitrifying electron transfer and oxidative phosphorylation. Consequently, energy-deficient cells reduced the electron supply for N2O reduction, which did not contribute to energy conservation. This work unveils a novel mechanism by which PHA microplastic aging impairs the bacterial N2O sink and highlights the need to consider environmental risks posed by biobased microplastic aging.
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Affiliation(s)
- Yu Zhang
- School of Engineering, Hangzhou Normal University, Hangzhou 310018, China
| | - Jing Lu
- School of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China
| | - Xiao-Zheng Zhang
- School of Engineering, Hangzhou Normal University, Hangzhou 310018, China
| | - Zheng-Zhe Zhang
- School of Engineering, Hangzhou Normal University, Hangzhou 310018, China
| | - Ren-Cun Jin
- School of Engineering, Hangzhou Normal University, Hangzhou 310018, China
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4
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Ma H, Khusnutdinova AN, Lemak S, Chernikova TN, Golyshina OV, Almendral D, Ferrer M, Golyshin PN, Yakunin AF. Polyesterase activity is widespread in the family IV carboxylesterases from bacteria. JOURNAL OF HAZARDOUS MATERIALS 2025; 481:136540. [PMID: 39561546 DOI: 10.1016/j.jhazmat.2024.136540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 10/25/2024] [Accepted: 11/15/2024] [Indexed: 11/21/2024]
Abstract
Enzyme-based depolymerization of plastics, including polyesters, has emerged as a promising approach for plastic waste recycling and reducing environmental plastic pollution. Currently, most of the known polyester-degrading enzymes are represented by a few natural and engineered PETases from the carboxylesterase family V. To identify novel groups of polyesterases, we selected 25 proteins from the carboxylesterase family IV, which share 22 % to 80 % sequence identity to the metagenomic thermophilic polyesterase IS12. All purified proteins were found to be active against chromogenic para-nitrophenyl esters with a preference for short acyl chains. Screening for polyesterase activity using emulsified polyesters demonstrated the presence of hydrolytic activity against bis(benzoyloxyethyl) terephthalate (3PET), polycaprolactone (PCL), and polylactic acid (PLA) in all tested proteins. Biochemical characterization of four selected polyesterases revealed high thermostability in CBA10055, whereas the mesophilic GEN0105 exhibited higher polyesterase activity. Two ancestral variants of GEN0105 showed higher thermostability and activity against PCL and PLA, but reduced activity with amorphous PET. Furthermore, six established PETases were found to be highly active against PCL and PLA. Thus, our results indicate that polyesterase activity is widespread in the family IV carboxylesterases, and that most polyesterases are promiscuous being able to degrade different polyesters.
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Affiliation(s)
- Hairong Ma
- Centre for Environmental Biotechnology, School of Environmental and Natural Sciences, Bangor University, Bangor, UK
| | - Anna N Khusnutdinova
- Centre for Environmental Biotechnology, School of Environmental and Natural Sciences, Bangor University, Bangor, UK
| | - Sofia Lemak
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada
| | - Tatyana N Chernikova
- Centre for Environmental Biotechnology, School of Environmental and Natural Sciences, Bangor University, Bangor, UK
| | - Olga V Golyshina
- Centre for Environmental Biotechnology, School of Environmental and Natural Sciences, Bangor University, Bangor, UK
| | - David Almendral
- Instituto de Catalisis y Petroleoquimica (ICP), CSIC, Madrid, Spain
| | - Manuel Ferrer
- Instituto de Catalisis y Petroleoquimica (ICP), CSIC, Madrid, Spain
| | - Peter N Golyshin
- Centre for Environmental Biotechnology, School of Environmental and Natural Sciences, Bangor University, Bangor, UK
| | - Alexander F Yakunin
- Centre for Environmental Biotechnology, School of Environmental and Natural Sciences, Bangor University, Bangor, UK; Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada.
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5
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Liu W, Li C, Li B, Zhu L, Ming D, Jiang L. Structure-guided discovery and rational design of a new poly(ethylene terephthalate) hydrolase from AlphaFold protein structure database. JOURNAL OF HAZARDOUS MATERIALS 2024; 480:136389. [PMID: 39500192 DOI: 10.1016/j.jhazmat.2024.136389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 10/15/2024] [Accepted: 10/31/2024] [Indexed: 12/01/2024]
Abstract
Enzymatic degradation offers a promising eco-friendly solution to plastic pollution, especially for polyethylene terephthalate (PET). Current efforts have focused on screening PET-degrading enzymes from microbial and metagenomic sources and obtaining superior candidates with a limited set of templates. More efficient PET hydrolases are required for PET-waste biorefinery. Here, using a structure-guided bioinformatic workflow, we identified a novel PET hydrolase, LSPET4, from Micromonospora sp. HM5-17, by screening the AlphaFold protein structure database. LSPET4 features a unique carbohydrate-binding module (CBM) and a distinctive linear substrate binding conformation. The intrinsic CBM in LSPET4 exhibited superior binding ability on PET surfaces and enhanced PET hydrolysis performance compared to the previously reported most effective CBM3. Through rational protein engineering focused on stabilizing and modifying the linear substrate binding conformation, we developed LSPET4M6 (D130P, N127F, Y96F, Q209E, A238K, D241S), a variant that achieved a 38.79-fold improvement in activity compared to the wild type, and was comparable to the reported most effective PET hydrolase derived from IsPETase, FAST-PETase at 45 ℃. This variant also demonstrated effectiveness in degrading various commercial PET materials, including PET food sealing films, PET strawberry boxes, and PET tomato boxes used in the food industry. This study not only provides a new template for protein engineering endeavors to create efficient biocatalysts for PET recycling but also offers an effective enzyme discovery approach to uncover enzymes of interest from the AlphaFold protein structure database.
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Affiliation(s)
- Wei Liu
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, Jiangsu 211816, China
| | - Chuang Li
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, Jiangsu 211816, China
| | - Bin Li
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu 211816, China
| | - Liying Zhu
- School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing, Jiangsu 211816, China
| | - Dengming Ming
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu 211816, China
| | - Ling Jiang
- College of Food Science and Light Industry, Nanjing Tech University, Nanjing, Jiangsu 211816, China; College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu 211816, China; State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, Jiangsu 211816, China.
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6
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Mamtimin T, Ouyang X, Wu WM, Zhou T, Hou X, Khan A, Liu P, Zhao YL, Tang H, Criddle CS, Han H, Li X. Novel Feruloyl Esterase for the Degradation of Polyethylene Terephthalate (PET) Screened from the Gut Microbiome of Plastic-Degrading Mealworms ( Tenebrio Molitor Larvae). ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:17717-17731. [PMID: 39315846 DOI: 10.1021/acs.est.4c01495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/25/2024]
Abstract
Mealworms (Tenebrio molitor) larvae can degrade both plastics and lignocellulose through synergistic biological activities of their gut microbiota because they share similarities in chemical and physical properties. Here, a total of 428 genes encoding lignocellulose-degrading enzymes were screened from the gut microbiome of T. molitor larvae to identify poly(ethylene terephthalate) (PET)-degrading activities. Five genes were successfully expressed in E. coli, among which a feruloyl esterase-like enzyme named TmFae-PETase demonstrated the highest PET degradation activity, converting PET into MHET (0.7 mgMHETeq ·h-1·mgenzyme-1) and TPA (0.2 mgTPAeq ·h-1·mgenzyme-1) at 50 °C. TmFae-PETase showed a preference for the hydrolysis of ferulic acid methyl ester (MFA) in the presence of both PET and MFA. Site-directed mutagenesis and molecular dynamics simulations of TmFae-PETase revealed similar catalytic mechanisms for both PET and MFA. TmFae-PETase effectively depolymerized commercial PET, making it a promising candidate for application. Additionally, the known PET hydrolases IsPETase, FsC, and LCC also hydrolyzed MFA, indicating a potential origin of PET hydrolytic activity from its lignocellulosic-degrading abilities. This study provides an innovative strategy for screening PET-degrading enzymes identified from lignocellulose degradation-related enzymes within the gut microbiome of plastic-degrading mealworms. This discovery expands the existing pool of plastic-degrading enzymes available for resource recovery and bioremediation applications.
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Affiliation(s)
- Tursunay Mamtimin
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- Center for Grassland Microbiome, State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730000, China
| | - Xingyu Ouyang
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200000, China
| | - Wei-Min Wu
- Department of Civil and Environmental Engineering, William & Cloy Codiga Resource Recovery Center, Stanford University, Stanford, California 94305, United States
| | - Tuoyu Zhou
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Xiaoxiao Hou
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Aman Khan
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- Ministry of Education, Key Laboratory of Saline-alkali Vegetation Ecology Restoration College of Life Sciences, Northeast Forestry University, Harbin 150040, China
| | - Pu Liu
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Yi-Lei Zhao
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200000, China
| | - Hongzhi Tang
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200000, China
| | - Craig S Criddle
- Department of Civil and Environmental Engineering, William & Cloy Codiga Resource Recovery Center, Stanford University, Stanford, California 94305, United States
| | - Huawen Han
- Center for Grassland Microbiome, State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730000, China
| | - Xiangkai Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
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7
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Zheng Y, Zhang J, You S, Lin W, Su R, Qi W. Efficient thermophilic polyethylene terephthalate hydrolase enhanced by cross correlation-based accumulated mutagenesis strategy. BIORESOURCE TECHNOLOGY 2024; 406:130929. [PMID: 38838832 DOI: 10.1016/j.biortech.2024.130929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 05/22/2024] [Accepted: 06/02/2024] [Indexed: 06/07/2024]
Abstract
Polyethylene terephthalate (PET) has caused significant pollution issues. Compared to chemical degradation with high energy consumption and cost, enzymatic degradation offers a sustainable solution for PET waste recycling. However, the hydrolytic activity of current PET hydrolases still requires improvement. In this study, a cross-correlation-based accumulated mutagenesis (CAM) strategy was developed to enhance the hydrolysis activity. By mitigating epistatic effect and combinational mutations, we achieved a highly active variant LCC-YGA (H183Y/L124G/S29A) with 2.1-fold hydrolytic activity on amorphous PET films of LCC-ICCG. Conformational analysis elucidated how the introduction of distal mutations enhanced activity. The dynamic correlation among different regions facilitated a synergistic effect, enhancing binding pocket flexibility through remote interactions. Totally, this work offers novel insights and methods for PET hydrolases engineering and provides an efficient enzyme for PET degradation and recycling.
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Affiliation(s)
- Yunxin Zheng
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, PR China
| | - Jiaxing Zhang
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, PR China
| | - Shengping You
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, PR China
| | - Wei Lin
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, PR China
| | - Rongxin Su
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, PR China; Collaborative Innovation Centre of Chemical Science and Engineering (Tianjin), Tianjin 300072, PR China; Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin University, Tianjin 300072, PR China
| | - Wei Qi
- State Key Laboratory of Chemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, PR China; Collaborative Innovation Centre of Chemical Science and Engineering (Tianjin), Tianjin 300072, PR China; Tianjin Key Laboratory of Membrane Science and Desalination Technology, Tianjin University, Tianjin 300072, PR China.
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8
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Taxeidis G, Nikolaivits E, Nikodinovic-Runic J, Topakas E. Mimicking the enzymatic plant cell wall hydrolysis mechanism for the degradation of polyethylene terephthalate. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 356:124347. [PMID: 38857840 DOI: 10.1016/j.envpol.2024.124347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 06/06/2024] [Accepted: 06/07/2024] [Indexed: 06/12/2024]
Abstract
Plastic pollution presents a global challenge, impacting ecosystems, wildlife, and economies. Polyethylene terephthalate (PET), widely used in products like bottles, significantly contributes to this issue due to poor waste collection. In recent years, there has been increasing interest in plant biomass-degrading enzymes for plastic breakdown, due to the structural and physicochemical similarities between natural and synthetic polymers. Filamentous fungi involved in hemicellulose degradation have developed a complex mode of action that includes not only enzymes but also biosurfactants; surface-active molecules that facilitate enzyme-substrate interactions. For this reason, this study aimed to mimic the mechanism of biomass degradation by repurposing plant cell wall degrading enzymes including a cutinase and three esterases to cooperatively contribute to PET degradation. Surfactants of different charge were also introduced in the reactions, as their role is similar to biosurfactants, altering the surface tension of the polymers and thus improving enzymes' accessibility. Notably, Fusarium oxysporum cutinase combined with anionic surfactant exhibited a 2.3- and 1.6-fold higher efficacy in hydrolyzing amorphous and semi-crystalline PET, respectively. When cutinase was combined with either of two ferulic acid esterases, it resulted in complete conversion of PET intermediate products to TPA, increasing the overall product release up to 1.9- fold in presence of surfactant. The combination of cutinase with a glucuronoyl esterase demonstrated significant potential in plastic depolymerization, increasing degradation yields in semi-crystalline PET by up to 1.4-fold. The approach of incorporating enzyme cocktails and surfactants emerge as an efficient solution for PET degradation in mild reaction conditions, with potential applications in eco-friendly plastic waste management.
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Affiliation(s)
- George Taxeidis
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Heroon Polytechniou 9, Zografou, 15772, Athens, Greece
| | - Efstratios Nikolaivits
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Heroon Polytechniou 9, Zografou, 15772, Athens, Greece
| | - Jasmina Nikodinovic-Runic
- Eco-Biotechnology & Drug Development Group, Laboratory for Microbial Molecular Genetics and Ecology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, 11000, Belgrade, Serbia
| | - Evangelos Topakas
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Heroon Polytechniou 9, Zografou, 15772, Athens, Greece.
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9
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Taxeidis G, Djapovic M, Nikolaivits E, Maslak V, Nikodinovic-Runic J, Topakas E. New Labeled PET Analogues Enable the Functional Screening and Characterization of PET-Degrading Enzymes. ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2024; 12:5943-5952. [PMID: 38903150 PMCID: PMC11187625 DOI: 10.1021/acssuschemeng.4c00143] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 03/14/2024] [Accepted: 03/15/2024] [Indexed: 06/22/2024]
Abstract
The discovery and engineering of novel biocatalysts capable of depolymerizing polyethylene terephthalate (PET) have gained significant attention since the need for green technologies to combat plastic pollution has become increasingly urgent. This study focuses on the development of novel substrates that can indicate enzymes with PET hydrolytic activity, streamlining the process of enzyme evaluation and selection. Four novel substrates, mimicking the structure of PET, were chemically synthesized and labeled with fluorogenic or chromogenic moieties, enabling the direct analysis of candidate enzymes without complex preparatory or analysis steps. The fluorogenic substrates, mUPET1, mUPET2, and mUPET3, not only identify enzymes capable of PET breakdown but also differentiate those with exceptional performance on the polymer, such as the benchmark PETase, LCCICCG. Among the substrates, the chromogenic p-NPhPET3 stands out as a reliable tool for screening both pure and crude enzymes, offering advantages over fluorogenic substrates such as ease of assay using UV-vis spectroscopy and compatibility with crude enzyme samples. However, ferulic acid esterases and mono-(2-hydroxyethyl) terephthalate esterases (MHETases), which exhibit remarkably high affinity for PET oligomers, also show high catalytic activity on these substrates. The substrates introduced in this study hold significant value in the function-based screening and characterization of enzymes that degrade PET, as well as the the potential to be used in screening mutant libraries derived from directed evolution experiments. Following this approach, a rapid and dependable assay method can be carried out using basic laboratory infrastructure, eliminating the necessity for intricate preparatory procedures before analysis.
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Affiliation(s)
- George Taxeidis
- Industrial
Biotechnology & Biocatalysis Group, Biotechnology Laboratory,
School of Chemical Engineering, National
Technical University of Athens, Heroon Polytechniou 9, Zografou, 15772 Athens, Greece
| | - Milica Djapovic
- Faculty
of Chemistry, University of Belgrade, Studentski trg 12-16, 11000 Belgrade, Belgrade, Serbia
| | - Efstratios Nikolaivits
- Industrial
Biotechnology & Biocatalysis Group, Biotechnology Laboratory,
School of Chemical Engineering, National
Technical University of Athens, Heroon Polytechniou 9, Zografou, 15772 Athens, Greece
| | - Veselin Maslak
- Faculty
of Chemistry, University of Belgrade, Studentski trg 12-16, 11000 Belgrade, Belgrade, Serbia
| | - Jasmina Nikodinovic-Runic
- Institute
of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, 11000 Belgrade, Serbia
| | - Evangelos Topakas
- Industrial
Biotechnology & Biocatalysis Group, Biotechnology Laboratory,
School of Chemical Engineering, National
Technical University of Athens, Heroon Polytechniou 9, Zografou, 15772 Athens, Greece
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10
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Makryniotis K, Nikolaivits E, Taxeidis G, Nikodinovic-Runic J, Topakas E. Exploring the substrate spectrum of phylogenetically distinct bacterial polyesterases. Biotechnol J 2024; 19:e2400053. [PMID: 38593303 DOI: 10.1002/biot.202400053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 03/09/2024] [Accepted: 03/25/2024] [Indexed: 04/11/2024]
Abstract
The rapid escalation of plastic waste accumulation presents a significant threat of the modern world, demanding an immediate solution. Over the last years, utilization of the enzymatic machinery of various microorganisms has emerged as an environmentally friendly asset in tackling this pressing global challenge. Thus, various hydrolases have been demonstrated to effectively degrade polyesters. Plastic waste streams often consist of a variety of different polyesters, as impurities, mainly due to wrong disposal practices, rendering recycling process challenging. The elucidation of the selective degradation of polyesters by hydrolases could offer a proper solution to this problem, enhancing the recyclability performance. Towards this, our study focused on the investigation of four bacterial polyesterases, including DaPUase, IsPETase, PfPHOase, and Se1JFR, a novel PETase-like lipase. The enzymes, which were biochemically characterized and structurally analyzed, demonstrated degradation ability of synthetic plastics. While a consistent pattern of polyesters' degradation was observed across all enzymes, Se1JFR stood out in the degradation of PBS, PLA, and polyether PU. Additionally, it exhibited comparable results to IsPETase, a benchmark mesophilic PETase, in the degradation of PCL and semi-crystalline PET. Our results point out the wide substrate spectrum of bacterial hydrolases and underscore the significant potential of PETase-like enzymes in polyesters degradation.
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Affiliation(s)
- Konstantinos Makryniotis
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Efstratios Nikolaivits
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - George Taxeidis
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Jasmina Nikodinovic-Runic
- Eco-Biotechnology & Drug Development Group, Laboratory for Microbial Molecular Genetics and Ecology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Evangelos Topakas
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
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11
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Qiu J, Chen Y, Zhang L, Wu J, Zeng X, Shi X, Liu L, Chen J. A comprehensive review on enzymatic biodegradation of polyethylene terephthalate. ENVIRONMENTAL RESEARCH 2024; 240:117427. [PMID: 37865324 DOI: 10.1016/j.envres.2023.117427] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 10/11/2023] [Accepted: 10/15/2023] [Indexed: 10/23/2023]
Abstract
Polyethylene terephthalate (PET) is a polymer synthesized via the dehydration and condensation reaction between ethylene glycol and terephthalic acid. PET has emerged as one of the most extensively employed plastic materials due to its exceptional plasticity and durability. Nevertheless, PET has a complex structure and is extremely difficult to degrade in nature, causing severe pollution to the global ecological environment and posing a threat to human health. Currently, the methods for PET processing mainly include physical, chemical, and biological methods. Biological enzyme degradation is considered the most promising PET degradation method. In recent years, an increasing number of enzymes that can degrade PET have been identified, and they primarily target the ester bond of PET. This review comprehensively introduced the latest research progress in PET enzymatic degradation from the aspects of PET-degrading enzymes, PET biodegradation pathways, the catalytic mechanism of PET-degrading enzymes, and biotechnological strategies for enhancing PET-degrading enzymes. On this basis, the current challenges within the enzymatic PET degradation process were summarized, and the directions that need to be worked on in the future were pointed out. This review provides a reference and basis for the subsequent effective research on PET biodegradation.
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Affiliation(s)
- Jiarong Qiu
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China; Development Center of Science and Education Park of Fuzhou University, Jinjiang, 362251, China
| | - Yuxin Chen
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China
| | - Liangqing Zhang
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China; Development Center of Science and Education Park of Fuzhou University, Jinjiang, 362251, China.
| | - Jinzhi Wu
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China
| | - Xianhai Zeng
- College of Energy, Xiamen University, Xiamen 361102, China
| | - Xinguo Shi
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China
| | - Lemian Liu
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China
| | - Jianfeng Chen
- School of Advanced Manufacturing, Fuzhou University, Jinjiang 362251, China
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12
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He Y, Deng X, Jiang L, Hao L, Shi Y, Lyu M, Zhang L, Wang S. Current advances, challenges and strategies for enhancing the biodegradation of plastic waste. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167850. [PMID: 37844647 DOI: 10.1016/j.scitotenv.2023.167850] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Revised: 10/13/2023] [Accepted: 10/13/2023] [Indexed: 10/18/2023]
Abstract
Due to its highly recalcitrant nature, the growing accumulation of plastic waste is becoming an urgent global problem. Biodegradation is one of the best possible approaches for the treatment of plastic waste in an environmentally friendly manner, but our current knowledge on the underlying mechanisms, as well as strategies for the development and enhancement of plastic biodegradation are still limited. This review aims to provide an updated and comprehensive overview of current research on plastic waste biodegradation, focusing on enhancement strategies with ongoing research significance, including the mining of highly efficient plastic-degrading microorganisms/enzymes, utilization of synergistic additives, novel pretreatment approaches, modification via molecular engineering, and construction of bacterial/enzyme consortia systems. Studying these strategies can (i) enrich the high-performance microbial/enzymes toolbox for plastic degradation, (ii) provide methods for recycling and upgrading plastics, as well as (iii) enable further molecular modification and functional optimization of plastic-degrading enzymes to realize economically viable biodegradation of plastics. To the best of our knowledge, this is the first review to discuss in detail strategies to enhance biodegradation of plastics. Finally, some recommendations for future research on plastic biodegradation are listed, hoping to provide the best direction for tackling the plastic waste dilemma in the future.
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Affiliation(s)
- Yuehui He
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Xilong Deng
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Lei Jiang
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Lijuan Hao
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Yong Shi
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Mingsheng Lyu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Lei Zhang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China.
| | - Shujun Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China.
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13
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Makryniotis K, Nikolaivits E, Gkountela C, Vouyiouka S, Topakas E. Discovery of a polyesterase from Deinococcus maricopensis and comparison to the benchmark LCC ICCG suggests high potential for semi-crystalline post-consumer PET degradation. JOURNAL OF HAZARDOUS MATERIALS 2023; 455:131574. [PMID: 37150100 DOI: 10.1016/j.jhazmat.2023.131574] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Revised: 05/02/2023] [Accepted: 05/02/2023] [Indexed: 05/09/2023]
Abstract
Plastic pollution remains a significant environmental challenge, with conventional waste management strategies proving insufficient in addressing the problem. Enzymatic degradation has emerged as a promising alternative, with LCCICCG, an engineered metagenome-derived cutinase, being the most effective in degrading polyethylene terephthalate (PET), the most commonly produced and discarded polyester. However, more efficient PET-hydrolases are needed for the upscaling of a PET-waste biorefinery. In this regard, the study reports the characterization of a novel, phylogenetically distinct, thermophilic polyesterase from Deinococcus maricopensis (DmPETase) and its comparison to LCCICCG. DmPETase is capable of degrading various synthetic polymers, including PET, polyurethane, as well as four semi-crystalline aliphatic polyesters. DmPETase was found to be comparable to LCCICCG at 50 °C in degrading semi-crystalline sections of post-consumer PET bottles, but it appeared to be less sensitive to crystallinity degree increase. This property makes DmPETase a new template for protein engineering endeavors to create an efficient biocatalyst to be integrated into the bio-recycling process of PET waste, without the need for amorphization of the materials.
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Affiliation(s)
- Konstantinos Makryniotis
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Efstratios Nikolaivits
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece.
| | - Christina Gkountela
- Laboratory of Polymer Technology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Stamatina Vouyiouka
- Laboratory of Polymer Technology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Evangelos Topakas
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece.
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14
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Ramasamy KP, Mahawar L, Rajasabapathy R, Rajeshwari K, Miceli C, Pucciarelli S. Comprehensive insights on environmental adaptation strategies in Antarctic bacteria and biotechnological applications of cold adapted molecules. Front Microbiol 2023; 14:1197797. [PMID: 37396361 PMCID: PMC10312091 DOI: 10.3389/fmicb.2023.1197797] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 05/31/2023] [Indexed: 07/04/2023] Open
Abstract
Climate change and the induced environmental disturbances is one of the major threats that have a strong impact on bacterial communities in the Antarctic environment. To cope with the persistent extreme environment and inhospitable conditions, psychrophilic bacteria are thriving and displaying striking adaptive characteristics towards severe external factors including freezing temperature, sea ice, high radiation and salinity which indicates their potential in regulating climate change's environmental impacts. The review illustrates the different adaptation strategies of Antarctic microbes to changing climate factors at the structural, physiological and molecular level. Moreover, we discuss the recent developments in "omics" approaches to reveal polar "blackbox" of psychrophiles in order to gain a comprehensive picture of bacterial communities. The psychrophilic bacteria synthesize distinctive cold-adapted enzymes and molecules that have many more industrial applications than mesophilic ones in biotechnological industries. Hence, the review also emphasizes on the biotechnological potential of psychrophilic enzymes in different sectors and suggests the machine learning approach to study cold-adapted bacteria and engineering the industrially important enzymes for sustainable bioeconomy.
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Affiliation(s)
| | - Lovely Mahawar
- Department of Plant Physiology, Faculty of Agrobiology and Food Resources, Slovak University of Agriculture, Nitra, Slovakia
| | - Raju Rajasabapathy
- Department of Marine Science, Bharathidasan University, Tiruchirappalli, Tamilnadu, India
| | | | - Cristina Miceli
- School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy
| | - Sandra Pucciarelli
- School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy
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15
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Taxeidis G, Nikolaivits E, Siaperas R, Gkountela C, Vouyiouka S, Pantelic B, Nikodinovic-Runic J, Topakas E. Triggering and identifying the polyurethane and polyethylene-degrading machinery of filamentous fungi secretomes. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 325:121460. [PMID: 36940913 DOI: 10.1016/j.envpol.2023.121460] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 03/16/2023] [Accepted: 03/17/2023] [Indexed: 06/18/2023]
Abstract
The uncontrollable disposal of plastic waste has raised the concern of the scientific community, which tries to face this environmental burden by discovering and applying new techniques. Regarding the biotechnology field, several important microorganisms possessing the necessary enzymatic arsenal to utilize recalcitrant synthetic polymers as an energy source have been discovered. In the present study, we screened various fungi for their ability to degrade intact polymers, such as ether-based polyurethane (PU) and low-density polyethylene (LDPE). For this, ImpranIil® DLN-SD and a mixture of long-chain alkanes were used as sole carbon sources, indicating not only the most promising strains in agar plate screening but also inducing the secretion of depolymerizing enzymatic activities, useful for polymer degradation. The agar plate screening revealed three fungal strains belonging to Fusarium and Aspergillus genera, whose secretome was further studied for its ability to degrade the aforementioned non-treated polymers. Specifically for ether-based PU, the secretome of a Fusarium species reduced the sample mass and the average molecular weight of the polymer by 24.5 and 20.4%, respectively, while the secretome of an Aspergillus species caused changes in the molecular structure of LDPE, as evidenced by FTIR. The proteomics analysis revealed that the enzymatic activities induced in presence of Impranil® DLN-SD can be associated with urethane bond cleavage, a fact which was also supported by the observed degradation of the ether-based PU. Although, the mechanism of LDPE degradation was not completely elucidated, the presence of oxidative enzymes could be the main factor contributing to polymer modification.
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Affiliation(s)
- George Taxeidis
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Efstratios Nikolaivits
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Romanos Siaperas
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Christina Gkountela
- Laboratory of Polymer Technology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Stamatina Vouyiouka
- Laboratory of Polymer Technology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Brana Pantelic
- Eco-Biotechnology & Drug Development Group, Laboratory for Microbial Molecular Genetics and Ecology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, 11000, Belgrade, Serbia
| | - Jasmina Nikodinovic-Runic
- Eco-Biotechnology & Drug Development Group, Laboratory for Microbial Molecular Genetics and Ecology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, 11000, Belgrade, Serbia
| | - Evangelos Topakas
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece.
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16
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Yan S, Xia D, Lai NC, Jiang B, Liu X. New insight into the synergistic reactions involved in the hydrothermal co-liquefaction of synthetic polymer wastes by molecular dynamics and DFT methods. JOURNAL OF HAZARDOUS MATERIALS 2023; 449:131032. [PMID: 36821896 DOI: 10.1016/j.jhazmat.2023.131032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 02/09/2023] [Accepted: 02/15/2023] [Indexed: 06/18/2023]
Abstract
Coliquefying synthetic aliphatic and aromatic polymer wastes using supercritical water has drawn considerable research attention. However, the mechanisms of chemical reactions between different types of polymers are ambiguous. Herein, depolymerization mechanisms for individual polymers and reaction mechanisms for binary polymer mixtures were investigated using molecular dynamics and density functional theory (DFT). The innovative approach showed that the production of oil from individual polymers during HTL was hindered by (1) volatile C1-C4 molecules emitted from aliphatic polymers and (2) polycyclic aromatic hydrocarbons (PAHs) produced from aromatic polymers. Interestingly, synergistic reactions among these byproducts from different polymers could promote oil production during coliquefaction. Specifically, the synergistic radical-related reactions included (1) the ring-opening of PAHs caused by C2H2 molecules emitted from aliphatic polymers and (2) the recombination of PHA branches and short-chain aliphatics. A considerable synergy between aromatic polymers with higher benzene ring contents and aliphatic polymers with lower H/C atomic ratios was observed near the critical temperature of 649 K. This work provides new insights into the synergistic reactions involved in the coliquefaction of synthetic polymers and gives useful guidance for realizing efficient oil production from mixed organic wastes.
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Affiliation(s)
- Shuo Yan
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Dehong Xia
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China; Beijing Key Laboratory for Energy Saving and Emission Reduction of Metallurgical Industry, Beijing 100083, China.
| | - Nien-Chu Lai
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Binfan Jiang
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Xiangjun Liu
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
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17
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Ali S, Bukhari DA, Rehman A. Call for biotechnological approach to degrade plastic in the era of COVID-19 pandemic. Saudi J Biol Sci 2023; 30:103583. [PMID: 36748033 PMCID: PMC9893805 DOI: 10.1016/j.sjbs.2023.103583] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 01/09/2023] [Accepted: 01/29/2023] [Indexed: 02/05/2023] Open
Abstract
Plastic pollution is a global issue and has become a major concern since Coronavirus disease (COVID)-19. In developing nations, landfilling and illegal waste disposal are typical ways to dispose of COVID-19-infected material. These technologies worsen plastic pollution and other human and animal health problems. Plastic degrades in light and heat, generating hazardous primary and secondary micro-plastic. Certain bacteria can degrade artificial polymers using genes, enzymes, and metabolic pathways. Microorganisms including bacteria degrade petrochemical plastics slowly. High molecular weight, strong chemical bonds, and excessive hydrophobicity reduce plastic biodegradation. There is not enough study on genes, enzymes, and bacteria-plastic interactions. Synthetic biology, metabolic engineering, and bioinformatics methods have been created to biodegrade synthetic polymers. This review will focus on how microorganisms' degrading capacity can be increased using recent biotechnological techniques.
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Key Words
- BHET, bis(2-hydroxyethyl
- Bacteria
- COVID-19
- COVID-19, Coronavirus disease-19
- FTIR, Fourier-transform infrared
- HDPE, High-density polyethene
- LDPE, Low-density polyethene
- MHET, Mono(2-hydroxyethyl
- MP, Microplastics
- Microorganisms
- NP, Nanoplastics
- PE, Polyethene
- PES, Polyethylene succinate
- PET, Polyethylene terephthalate
- PP, Polypropylene
- PPE, Personal protective equipment
- PS, Polystyrene
- PVC, Polyvinyl chloride
- Plastic degradation
- Plastic pollution
- TCA, Tricarboxylic acid
- TPA, Terephthalic acid
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Affiliation(s)
- Shakir Ali
- Department of Zoology, Government College University, Lahore, Pakistan
| | - Dilara A. Bukhari
- Department of Zoology, Government College University, Lahore, Pakistan
| | - Abdul Rehman
- Institute of Microbiology and Molecular Genetics, University of the Punjab, New Campus, Lahore 54590, Pakistan
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18
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Charupanit K, Tipmanee V, Sutthibutpong T, Limsakul P. In Silico Identification of Potential Sites for a Plastic-Degrading Enzyme by a Reverse Screening through the Protein Sequence Space and Molecular Dynamics Simulations. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27103353. [PMID: 35630830 PMCID: PMC9143596 DOI: 10.3390/molecules27103353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 05/19/2022] [Accepted: 05/20/2022] [Indexed: 11/16/2022]
Abstract
The accumulation of polyethylene terephthalate (PET) seriously harms the environment because of its high resistance to degradation. The recent discovery of the bacteria-secreted biodegradation enzyme, PETase, sheds light on PET recycling; however, the degradation efficiency is far from practical use. Here, in silico alanine scanning mutagenesis (ASM) and site-saturation mutagenesis (SSM) were employed to construct the protein sequence space from binding energy of the PETase–PET interaction to identify the number and position of mutation sites and their appropriate side-chain properties that could improve the PETase–PET interaction. The binding mechanisms of the potential PETase variant were investigated through atomistic molecular dynamics simulations. The results show that up to two mutation sites of PETase are preferable for use in protein engineering to enhance the PETase activity, and the proper side chain property depends on the mutation sites. The predicted variants agree well with prior experimental studies. Particularly, the PETase variants with S238C or Q119F could be a potential candidate for improving PETase. Our combination of in silico ASM and SSM could serve as an alternative protocol for protein engineering because of its simplicity and reliability. In addition, our findings could lead to PETase improvement, offering an important contribution towards a sustainable future.
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Affiliation(s)
- Krit Charupanit
- Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand; (K.C.); (V.T.)
| | - Varomyalin Tipmanee
- Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand; (K.C.); (V.T.)
| | - Thana Sutthibutpong
- Theoretical and Computational Physics Group, Department of Physics, Faculty of Science, King Mongkut’s University of Technology Thonburi (KMUTT), Bangkok 10140, Thailand;
- Center of Excellence in Theoretical and Computational Science (TaCS-CoE), Faculty of Science, King Mongkut’s University of Technology Thonburi (KMUTT), Bangkok 10140, Thailand
| | - Praopim Limsakul
- Division of Physical Science, Faculty of Science, Prince of Songkla University, Songkhla 90110, Thailand
- Center of Excellence for Trace Analysis and Biosensor (TAB-CoE), Faculty of Science, Prince of Songkla University, Songkhla 90110, Thailand
- Correspondence:
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19
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James A, De S. Cation–π and hydrophobic interaction controlled PET recognition in double mutated cutinase – identification of a novel binding subsite for better catalytic activity. RSC Adv 2022; 12:20563-20577. [PMID: 35919142 PMCID: PMC9284348 DOI: 10.1039/d2ra03394a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 07/05/2022] [Indexed: 12/14/2022] Open
Abstract
Accelerated hydrolysis of polyethylene terephthalate (PET) by enzymatic surface modification of various hydrolases, which would not degrade the building blocks of PET in order to retain the quality of recycled PET, is a promising research area. Many studies have been reported to identify mutations of different hydrolases that can improve PET degradation. Recently, the mutation of glycine and phenyl alanine with alanine in cutinase was found to improve the activity of PET degradation 6-fold. Yet, a deep insight into the overall structural basis as well as the explicit role played by the amino acid residues for PET degradation is still elusive, which is nevertheless important for comparative analyses, structure–function relations and rational optimization of the degradation process. Our molecular dynamics simulations coupled with quantum mechanical study demonstrate that mutations of anchor residue phenyl alanine to alanine at the PET binding cleft of cutinase unveiled a distal yet novel binding subsite, which alters the nature of dispersive interaction for PET recognition and binding. The phenyl alanine engages in π–π interaction with the phenyl ring of PET (−8.5 kcal mol−1), which on one side helps in PET recognition, but on the other side restricts PET to attain fully extended conformations over the entire binding cleft. The loss of π–π interaction due to mutation of phenyl alanine to alanine is not only compensated by the favourable cation–π and hydrophobic interactions from the arginine residues (−17.1 kcal mol−1) found in the newly discovered subsite, but also favours the fully extended PET conformation. This subsequently impacts the overall increased catalytic activity of mutated cutinase. Molecular recognition and binding of PET on cutinase controlled by switching between π–π and cation–π interactions.![]()
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Affiliation(s)
- Anjima James
- Department of Applied Chemistry, Cochin University of Science and Technology, Thrikkakara, Kochi 682 022, Kerala, India
| | - Susmita De
- Department of Chemistry, Center for Computational Chemistry & Drug Discovery, University of Calicut, Calicut University P.O., Malappuram 673 635, Kerala, India
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