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Malherbe M, Webb N, Palisson-Kramer M, Ndiema EK, Braun DR, Haeusler M, Forrest F. Ecomorphology in Kenya's Koobi Fora Formation: Reconstructing Early Pleistocene hominin paleoenvironments with 3D geometric morphometric analyses of bovid metapodials. J Hum Evol 2025; 203:103681. [PMID: 40273661 DOI: 10.1016/j.jhevol.2025.103681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Revised: 03/26/2025] [Accepted: 03/26/2025] [Indexed: 04/26/2025]
Abstract
This research presents a new method of ecological morphology (ecomorphology) analysis using three-dimensional geometric morphometrics to quantify shape variation in extant bovid metapodials with known habitat preferences. Extant data were used to create a model for classifying bones into distinct habitat categories and to test functional hypotheses related to locomotor behavior in different habitats. The model was then applied to fossils from the Koobi Fora Formation, Kenya, to assess the environmental context during important events in hominin evolution. The use of three-dimensional geometric morphometrics demonstrates significant improvement over traditional methods using caliper measurements. Discriminant function analysis successfully classified 94% of metacarpals and 93% of metatarsals into their correct habitat categories for modern specimens. The protocol was reduced to a subset of landmarks focused on the distal epiphyses. This model produced greater overlap, but classification success rates remained high, with 82% and 83% correct classification for modern metacarpals and metatarsals, respectively. We applied the reduced model to metapodials from Upper Burgi (1.98-1.87 Ma), KBS (1.87-1.56 Ma), and Okote (1.56-1.38 Ma) members in the Koobi Fora Formation. This location is important to understanding human evolution, fossil diversity, and paleoecology. Moreover, previous studies on faunal abundance, paleosol carbonates, and carbon isotopes provide a robust framework to compare the findings of this study. Our analyses classified the majority of fossil specimens as open-habitat dwellers, with a few specimens grouped as closed-adapted, the highest number of these falling within the Okote Member sample. This suggests that open and likely xeric environments dominated the East Turkana region during the Early Pleistocene. These findings are consistent with many previous reconstructions, though with a more open signal for the Okote Member than expected based on bovid abundance research.
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Affiliation(s)
- Megan Malherbe
- Institute of Evolutionary Medicine, University of Zürich, 190 Winterthurerstrasse, Zürich, 8001, Switzerland; Human Evolution Research Institute, University of Cape Town, Woolsack Drive, Rondebosch, Cape Town, 7701, South Africa.
| | - Nicole Webb
- Institute of Evolutionary Medicine, University of Zürich, 190 Winterthurerstrasse, Zürich, 8001, Switzerland; Institute of Archaeological Sciences, Senckenberg Centre for Human Evolution and Palaeoenvironment, Eberhard Karls University of Tübingen, 23 Rümelinstrasse, Tübingen, 72074, Germany
| | - Magdalena Palisson-Kramer
- School of Anthropology, Pontifical Catholic University of Chile, Av. Vicuña Mackenna, San Joaquín, Santiago, 7820436, Chile
| | - Emmanuel K Ndiema
- Department of Earth Sciences, National Museums of Kenya, Nairobi, 00100, Kenya
| | - David R Braun
- Technological Primates Research Group, Max Planck Institute for Evolutionary Anthropology, Leipzig, 04103, Germany; Department of Anthropology and Centre for Advanced Study of Human Paleobiology, The George Washington University, Washington, DC, 20052, USA
| | - Martin Haeusler
- Institute of Evolutionary Medicine, University of Zürich, 190 Winterthurerstrasse, Zürich, 8001, Switzerland
| | - Frances Forrest
- Department of Sociology and Anthropology, Fairfield University, 1073 N Benson Rd, Fairfield, CT, 06824, USA; American Museum of Natural History, 200 Central Park West, New York, NY, 10024, USA.
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Malherbe M, Pickering R, Stynder D, Haeusler M. The large mammal fossil fauna of the Cradle of Humankind, South Africa: a review. PeerJ 2025; 13:e18946. [PMID: 40017660 PMCID: PMC11867040 DOI: 10.7717/peerj.18946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Accepted: 01/16/2025] [Indexed: 03/01/2025] Open
Abstract
South Africa's Cradle of Humankind UNESCO World Heritage Site has remained the single richest source of hominin fossils for over ninety years. While its hominin specimens have been the subject of extensive research, the same is not true for its abundant faunal assemblages, despite their value in Plio-Pleistocene palaeoenvironmental reconstructions. Moreover, precise ages and depositional histories have been historically difficult to assess, though advancements in both relative and absolute dating techniques are changing this. This review explores the history of non-hominin large mammal faunal reporting, palaeoenvironmental reconstructions based on these fauna, and dating histories (with a focus on biochronology) at the following eight fossil-bearing sites of the Cradle that have been radiometrically dated with uranium-lead: Bolt's Farm, Cooper's Cave, Drimolen, Haasgat, Hoogland, Malapa, Sterkfontein and Swartkrans. Continued efforts to provide more precise and direct ages for sites using a variety of methods indicate that the bulk of Cradle deposits date to between 3 and 1.4 Ma. We find that, across almost all eight sites, there is little discussion or debate surrounding faunal reports, with some sites described by a single publication. Many of the reports are decades old with little review or reanalysis in the years following, emphasising the need for reviews such as this one. Our analysis of the data indicates that faunal-based paleoenvironmental reconstructions across sites commonly show a trend of wooded landscapes giving way to grasslands. We find that these reconstructions are primarily based on faunal abundance data, despite the availability of many other informative analytical techniques. The findings of this review highlight a need for more extensive and robust faunal reporting, as this will aid in understanding the context of these Cradle sites.
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Affiliation(s)
- Megan Malherbe
- Institute of Evolutionary Medicine, University of Zürich, Zürich, Switzerland
- Human Evolution Research Institute, University of Cape Town, Cape Town, South Africa
| | - Robyn Pickering
- Human Evolution Research Institute, University of Cape Town, Cape Town, South Africa
- Department of Geological Sciences, University of Cape Town, Cape Town, South Africa
| | - Deano Stynder
- Department of Archaeology, University of Cape Town, Cape Town, South Africa
| | - Martin Haeusler
- Institute of Evolutionary Medicine, University of Zürich, Zürich, Switzerland
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Negash EW, Alemseged Z, Barr WA, Behrensmeyer AK, Blumenthal SA, Bobe R, Carvalho S, Cerling TE, Chritz KL, McGuire E, Uno KT, Wood B, Wynn JG. Modern African ecosystems as landscape-scale analogues for reconstructing woody cover and early hominin environments. J Hum Evol 2024; 197:103604. [PMID: 39541667 DOI: 10.1016/j.jhevol.2024.103604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 10/09/2024] [Accepted: 10/12/2024] [Indexed: 11/16/2024]
Abstract
Reconstructing habitat types available to hominins and inferring how the paleo-landscape changed through time are critical steps in testing hypotheses about the selective pressures that drove the emergence of bipedalism, tool use, a change in diet, and progressive encephalization. Change in the amount and distribution of woody vegetation has been suggested as one of the important factors that shaped early hominin evolution. Previous models for reconstructing woody cover at eastern African hominin fossil sites used global-scale modern soil comparative datasets. Our higher-spatial-resolution study of carbon isotopes in soil organic matter is based on 26 modern African locations, ranging from tropical grass-dominated savannas to forests. We used this dataset to generate a new Eastern Africa-specific Woody Cover Model (EAWCM), which indicates that eastern African hominin sites were up to 13% more wooded than reconstructions based on previous models. Reconstructions using the EAWCM indicate widespread woodlands/bushlands and wooded grasslands and a shift toward C4-dominated landscapes in eastern Africa over the last 6 million years. Our results indicate that mixed tree-C4 grass savannas with 10-80% tree cover (but not pure grasslands with <10 % tree cover) dominated early hominin paleoenvironments. Landscapes with these biomes are marked by exceptional heterogeneity, which posed challenges and offered opportunities to early hominins that likely contributed to major behavioral and morphological shifts in the hominin clade.
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Affiliation(s)
- Enquye W Negash
- Division of Biology and Paleo Environment, Lamont-Doherty Earth Observatory of Columbia University, 61 Route 9W, Palisades, NY 10964, USA.
| | - Zeresenay Alemseged
- Department of Organismal Biology and Anatomy, University of Chicago, 1027 E57th Street, Chicago, IL 60637, USA
| | - W Andrew Barr
- Department of Anthropology, Center for the Advanced Study of Human Paleobiology, George Washington University, 800 22nd St NW, Suite 6000, Washington D.C. 20052, USA
| | - Anna K Behrensmeyer
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, MRC 121, Washington D.C. 20013, USA
| | - Scott A Blumenthal
- Department of Anthropology, University of Oregon, 1321 Kincaid Street, Eugene, OR 97403, USA; Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2207 Main Mall Vancouver, British Columbia V6T 1Z4, Canada
| | - René Bobe
- Primate Models for Behavioural Evolution Lab, School of Anthropology and Museum Ethnography, University of Oxford, 64 Banbury Road, Oxford, OX2 6PN, United Kingdom; Gorongosa National Park, Sofala, Mozambique; ICArEHB, Universidade do Algarve, Faro, Portugal
| | - Susana Carvalho
- Primate Models for Behavioural Evolution Lab, School of Anthropology and Museum Ethnography, University of Oxford, 64 Banbury Road, Oxford, OX2 6PN, United Kingdom; Gorongosa National Park, Sofala, Mozambique; ICArEHB, Universidade do Algarve, Faro, Portugal
| | - Thure E Cerling
- Department of Geology and Geophysics, University of Utah, 115 South 1460 East, FASB, Salt Lake City, UT 84112, USA
| | - Kendra L Chritz
- Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2207 Main Mall Vancouver, British Columbia V6T 1Z4, Canada
| | - Elizabeth McGuire
- Department of Anthropology, University of Oregon, 1321 Kincaid Street, Eugene, OR 97403, USA
| | - Kevin T Uno
- Department of Human Evolutionary Biology, Harvard University, 11 Divinity Avenue, Cambridge, MA 02138, USA
| | - Bernard Wood
- Department of Anthropology, Center for the Advanced Study of Human Paleobiology, George Washington University, 800 22nd St NW, Suite 6000, Washington D.C. 20052, USA
| | - Jonathan G Wynn
- Division of Earth Sciences, National Science Foundation, 2415 Eisenhower Ave, Alexandria, VA 22314, USA
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Smith TM, Arora M, Austin C, Nunes Ávila J, Duval M, Lim TT, Piper PJ, Vaiglova P, de Vos J, Williams IS, Zhao JX, Green DR. Oxygen isotopes in orangutan teeth reveal recent and ancient climate variation. eLife 2024; 12:RP90217. [PMID: 38457350 PMCID: PMC10942278 DOI: 10.7554/elife.90217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/10/2024] Open
Abstract
Studies of climate variation commonly rely on chemical and isotopic changes recorded in sequentially produced growth layers, such as in corals, shells, and tree rings, as well as in accretionary deposits-ice and sediment cores, and speleothems. Oxygen isotopic compositions (δ18O) of tooth enamel are a direct method of reconstructing environmental variation experienced by an individual animal. Here, we utilize long-forming orangutan dentitions (Pongo spp.) to probe recent and ancient rainfall trends on a weekly basis over ~3-11 years per individual. We first demonstrate the lack of any consistent isotopic enrichment effect during exclusive nursing, supporting the use of primate first molar teeth as environmental proxies. Comparisons of δ18O values (n=2016) in twelve molars from six modern Bornean and Sumatran orangutans reveal a high degree of overlap, with more consistent annual and bimodal rainfall patterns in the Sumatran individuals. Comparisons with fossil orangutan δ18O values (n=955 measurements from six molars) reveal similarities between modern and late Pleistocene fossil Sumatran individuals, but differences between modern and late Pleistocene/early Holocene Bornean orangutans. These suggest drier and more open environments with reduced monsoon intensity during this earlier period in northern Borneo, consistent with other Niah Caves studies and long-term speleothem δ18O records in the broader region. This approach can be extended to test hypotheses about the paleoenvironments that early humans encountered in southeast Asia.
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Affiliation(s)
- Tanya M Smith
- Griffith Centre for Social and Cultural Research, Griffith UniversitySouthportAustralia
- Australian Research Centre for Human Evolution, Griffith UniversitySouthportAustralia
| | - Manish Arora
- Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount SinaiNew YorkUnited States
| | - Christine Austin
- Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount SinaiNew YorkUnited States
| | - Janaína Nunes Ávila
- Griffith Centre for Social and Cultural Research, Griffith UniversitySouthportAustralia
- School of the Environment, The University of QueenslandBrisbaneAustralia
| | - Mathieu Duval
- Australian Research Centre for Human Evolution, Griffith UniversitySouthportAustralia
- Centro Nacional de Investigación sobre la Evolución Humana (CENIEH)BurgosSpain
- Palaeoscience Labs, Department of Archaeology and History, La Trobe UniversityMelbourneAustralia
| | - Tze Tshen Lim
- Department of Geology, Universiti MalayaKuala LumpurMalaysia
| | - Philip J Piper
- School of Archaeology and Anthropology, The Australian National UniversityCanberraAustralia
| | - Petra Vaiglova
- Griffith Centre for Social and Cultural Research, Griffith UniversitySouthportAustralia
- Australian Research Centre for Human Evolution, Griffith UniversitySouthportAustralia
- School of Archaeology and Anthropology, The Australian National UniversityCanberraAustralia
| | - John de Vos
- Department of Geology, Naturalis Biodiversity CenterLeidenNetherlands
| | - Ian S Williams
- Research School of Earth Sciences, The Australian National UniversityCanberraAustralia
| | - Jian-xin Zhao
- Radiogenic Isotope Facility, School of the Environment, The University of QueenslandBrisbaneAustralia
| | - Daniel R Green
- Australian Research Centre for Human Evolution, Griffith UniversitySouthportAustralia
- Department of Human Evolutionary Biology, Harvard UniversityCambridgeUnited States
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Villaseñor A, Uno KT, Kinyanjui RN, Behrensmeyer AK, Bobe R, Advokaat EL, Bamford M, Carvalho SC, Hammond AS, Palcu DV, Sier MJ, Ward CV, Braun DR. Pliocene hominins from East Turkana were associated with mesic environments in a semiarid basin. J Hum Evol 2023; 180:103385. [PMID: 37229946 DOI: 10.1016/j.jhevol.2023.103385] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 04/15/2023] [Accepted: 04/19/2023] [Indexed: 05/27/2023]
Abstract
During the middle Pliocene (∼3.8-3.2 Ma), both Australopithecus afarensis and Kenyanthropus platyops are known from the Turkana Basin, but between 3.60 and 3.44 Ma, most hominin fossils are found on the west side of Lake Turkana. Here, we describe a new hominin locality (ET03-166/168, Area 129) from the east side of the lake, in the Lokochot Member of the Koobi Fora Formation (3.60-3.44 Ma). To reconstruct the paleoecology of the locality and its surroundings, we combine information from sedimentology, the relative abundance of associated mammalian fauna, phytoliths, and stable isotopes from plant wax biomarkers, pedogenic carbonates, and fossil tooth enamel. The combined evidence provides a detailed view of the local paleoenvironment occupied by these Pliocene hominins, where a biodiverse community of primates, including hominins, and other mammals inhabited humid, grassy woodlands in a fluvial floodplain setting. Between <3.596 and 3.44 Ma, increases in woody vegetation were, at times, associated with increases in arid-adapted grasses. This suggests that Pliocene vegetation included woody species that were resilient to periods of prolonged aridity, resembling vegetation structure in the Turkana Basin today, where arid-adapted woody plants are a significant component of the ecosystem. Pedogenic carbonates indicate more woody vegetation than other vegetation proxies, possibly due to differences in temporospatial scale and ecological biases in preservation that should be accounted for in future studies. These new hominin fossils and associated multiproxy paleoenvironmental indicators from a single locale through time suggest that early hominin species occupied a wide range of habitats, possibly including wetlands within semiarid landscapes. Local-scale paleoecological evidence from East Turkana supports regional evidence that middle Pliocene eastern Africa may have experienced large-scale, climate-driven periods of aridity. This information extends our understanding of hominin environments beyond the limits of simple wooded, grassy, or mosaic environmental descriptions.
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Affiliation(s)
- Amelia Villaseñor
- Department of Anthropology, The University of Arkansas, 330 Old Main, Fayetteville, AR, 72701, USA.
| | - Kevin T Uno
- Lamont-Doherty Earth Observatory of Columbia University, Division of Biology and Paleo Environment, Palisades, NY, 10964, USA
| | - Rahab N Kinyanjui
- Department of Earth Sciences, National Museums of Kenya, Nairobi, 40658-00100, Kenya; Department of Archaeology, Max Planck Institute of Geoanthropology, 07745, Jena, Germany; Human Origins Program, National Museum of Natural History, Smithsonian Institution, MRC 121, Washington, DC, 20013, USA
| | - Anna K Behrensmeyer
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, MRC 121, Washington, DC, 20013, USA
| | - René Bobe
- Primate Models for Behavioural Evolution Lab, Institute of Human Sciences, University of Oxford, 64 Banbury Road, Oxford, OX2 6PN, UK; Gorongosa National Park, Sofala, Mozambique
| | - Eldert L Advokaat
- Department of Earth Sciences, Utrecht University, Princetonlaan 8A, 3584 CB Utrecht, the Netherlands
| | - Marion Bamford
- Evolutionary Studies Institute and School of Geosciences, University of the Witwatersrand, P Bag 3, WITS, 2050, South Africa
| | - Susana C Carvalho
- Primate Models for Behavioural Evolution Lab, Institute of Human Sciences, University of Oxford, 64 Banbury Road, Oxford, OX2 6PN, UK; Gorongosa National Park, Sofala, Mozambique; Interdisciplinary Center for Archaeology and Evolution of Human Behaviour (ICArEHB), Universidade do Algarve, 8005-139, Faro, Portugal
| | - Ashley S Hammond
- Division of Anthropology, American Museum of Natural History (AMNH), New York, NY, 10024, USA; New York Consortium in Evolutionary Primatology at AMNH, New York, NY, 10024, USA
| | - Dan V Palcu
- Oceanographic Institute of the University of São Paulo, Brazil; Paleomagnetic Laboratory 'Fort Hoofddijk', Utrecht University, Budapestlaan 17, 3584 CD, Utrecht, the Netherlands
| | - Mark J Sier
- Centro Nacional de Investigación Sobre la Evolución Humana (CENIEH), Paseo Sierra de Atapuerca 3, 09002, Burgos, Spain; Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK; Department of Earth Sciences, Utrecht University, Princetonlaan 8A, 3584 CB Utrecht, the Netherlands
| | - Carol V Ward
- Department of Pathology and Anatomical Sciences, University of Missouri, Columbia, MO, USA
| | - David R Braun
- Center for the Advanced Study of Human Paleobiology, Anthropology Department, George Washington University, Washington, DC, USA
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