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deMayo JA, Ragland GJ. (Limited) Predictability of thermal adaptation in invertebrates. J Exp Biol 2025; 228:JEB249450. [PMID: 40052398 DOI: 10.1242/jeb.249450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2025]
Abstract
Evolutionary genomic approaches provide powerful tools to understand variation in and evolution of physiological processes. Untargeted genomic or transcriptomic screens can identify functionally annotated candidate genes linked to specific physiological processes, in turn suggesting evolutionary roles for these processes. Such studies often aim to inform modeling of the potential of natural populations to adapt to climate change, but these models are most accurate when evolutionary responses are repeatable, and thus predictable. Here, we synthesize the evolutionary genetic and comparative transcriptomic literature on terrestrial and marine invertebrates to assess whether evolutionary responses to temperature are repeatable within populations, across populations and across species. There is compelling evidence for repeatability, sometimes even across species. However, responses to laboratory selection and geographic variation across thermal gradients appear to be highly idiosyncratic. We also survey whether genetic/transcriptomic studies repeatedly identify candidate genes in three functional groups previously associated with the response to thermal stress: heat shock protein (Hsp) genes, proteolysis genes and immunity genes. Multiple studies across terrestrial and marine species identify candidates included in these gene sets. Yet, each of the gene sets are identified in only a minority of studies. Together, these patterns suggest that there is limited predictability of evolutionary responses to natural selection, including across studies within species. We discuss specific patterns for the candidate gene sets, implications for predictive modeling, and other potential applications of evolutionary genetics in elucidating physiology and gene function. Finally, we discuss limitations of inferences from available evolutionary genetic studies and directions for future research.
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Affiliation(s)
- James A deMayo
- Department of Integrative Biology, University of Colorado Denver, 1151 Arapahoe St, Denver, CO 80204, USA
| | - Gregory J Ragland
- Department of Integrative Biology, University of Colorado Denver, 1151 Arapahoe St, Denver, CO 80204, USA
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2
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Perlmutter JI, Atadurdyyeva A, Schedl ME, Unckless RL. Wolbachia enhances the survival of Drosophila infected with fungal pathogens. BMC Biol 2025; 23:42. [PMID: 39934832 PMCID: PMC11817339 DOI: 10.1186/s12915-025-02130-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2024] [Accepted: 01/13/2025] [Indexed: 02/13/2025] Open
Abstract
BACKGROUND Wolbachia bacteria of arthropods are at the forefront of basic and translational research on multipartite host-symbiont-pathogen interactions. These vertically transmitted microbes are the most widespread endosymbionts on the planet due to factors including host reproductive manipulation and fitness benefits. Importantly, some strains of Wolbachia can inhibit viral pathogenesis within and between arthropod hosts. Mosquitoes carrying the wMel Wolbachia strain of Drosophila melanogaster have a greatly reduced capacity to spread viruses like dengue and Zika to humans. While significant research efforts have focused on viruses, relatively little attention has been given to Wolbachia-fungal interactions despite the ubiquity of fungal entomopathogens in nature. RESULTS Here, we demonstrate that Wolbachia increase the longevity of their Drosophila melanogaster hosts when challenged with a spectrum of yeast and filamentous fungal pathogens. We find that this pattern can vary based on host genotype, sex, and fungal species. Further, Wolbachia correlates with higher fertility and reduced pathogen titers during initial fungal infection, indicating a significant fitness benefit. Finally, RNA sequencing results show altered expression of many immune and stress response genes in the context of Wolbachia and fungal infection, suggesting host immunity may be involved in the mechanism. CONCLUSIONS This study demonstrates Wolbachia's protective role in diverse fungal pathogen interactions and determines that the phenotype is broad, but with several variables that influence both the presence and strength of the phenotype. It also is a critical step forward to understanding how symbionts can protect their hosts from a variety of pathogens.
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Affiliation(s)
| | - Aylar Atadurdyyeva
- Department of Molecular Biosciences, University of Kansas, Lawrence, KS, USA
| | - Margaret E Schedl
- Department of Molecular Biosciences, University of Kansas, Lawrence, KS, USA
| | - Robert L Unckless
- Department of Molecular Biosciences, University of Kansas, Lawrence, KS, USA
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Amstrup AB, Kovac H, Käfer H, Stabentheiner A, Sørensen JG. The heat shock response in Polistes spp. brood from differing climates following heat stress. JOURNAL OF INSECT PHYSIOLOGY 2024; 156:104667. [PMID: 38914156 DOI: 10.1016/j.jinsphys.2024.104667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 04/10/2024] [Accepted: 06/21/2024] [Indexed: 06/26/2024]
Abstract
Temperature is a crucial factor in many physiological processes, especially in small ectotherms whose body temperature is highly influenced by ambient temperature. Polistes (paper wasps) is a genus of primitively eusocial wasps found in widely varying thermal environments throughout the world. Paper wasps construct open-faced combs in which the brood is exposed to varying ambient temperatures. The Heat Shock Response is a physiological mechanism that has been shown to help cope with thermal stress. We investigated the expression of heat shock proteins in different life stages of three species of Polistes from different climates with the aim of deducing adaptive patterns. This was done by assaying heat shock protein (hsp70, hsp83, hsc70) expression during control conditions (25 °C) or a heat insult (35 or 45 °C) in individuals collected from natural populations in Alpine, Temperate, or Mediterranean climates. Basal expression of hsc70 and hsp83 was found to be high, while hsp70 and hsp83 expression was found to be highly responsive to severe heat stress. As expression levels varied based on species, geographical origin, and life stage as well as between heat shock proteins, the Heat Shock Response of Polistes was found to be complex. The results suggest that adaptive utilization of the heat shock response contributes to the ability of Polistes spp. to inhabit widely different thermal environments.
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Affiliation(s)
- A B Amstrup
- Institute of Biology, University of Graz, Graz, Austria; Department of Biology, Aarhus University, Aarhus, Denmark.
| | - H Kovac
- Institute of Biology, University of Graz, Graz, Austria.
| | - H Käfer
- Institute of Biology, University of Graz, Graz, Austria
| | | | - J G Sørensen
- Department of Biology, Aarhus University, Aarhus, Denmark
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4
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Rommelaere S, Carboni A, Bada Juarez JF, Boquete JP, Abriata LA, Teixeira Pinto Meireles F, Rukes V, Vincent C, Kondo S, Dionne MS, Dal Peraro M, Cao C, Lemaitre B. A humoral stress response protects Drosophila tissues from antimicrobial peptides. Curr Biol 2024; 34:1426-1437.e6. [PMID: 38484734 DOI: 10.1016/j.cub.2024.02.049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 12/18/2023] [Accepted: 02/21/2024] [Indexed: 04/11/2024]
Abstract
7An efficient immune system must provide protection against a broad range of pathogens without causing excessive collateral tissue damage. While immune effectors have been well characterized, we know less about the resilience mechanisms protecting the host from its own immune response. Antimicrobial peptides (AMPs) are small, cationic peptides that contribute to innate defenses by targeting negatively charged membranes of microbes. While protective against pathogens, AMPs can be cytotoxic to host cells. Here, we reveal that a family of stress-induced proteins, the Turandots, protect the Drosophila respiratory system from AMPs, increasing resilience to stress. Flies lacking Turandot genes are susceptible to environmental stresses due to AMP-induced tracheal apoptosis. Turandot proteins bind to host cell membranes and mask negatively charged phospholipids, protecting them from cationic pore-forming AMPs. Collectively, these data demonstrate that Turandot stress proteins mitigate AMP cytotoxicity to host tissues and therefore improve their efficacy.
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Affiliation(s)
- Samuel Rommelaere
- Global Health Institute, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
| | - Alexia Carboni
- Global Health Institute, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Juan F Bada Juarez
- Institute of Bioengineering, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Jean-Philippe Boquete
- Global Health Institute, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Luciano A Abriata
- Institute of Bioengineering, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Fernando Teixeira Pinto Meireles
- Institute of Bioengineering, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Verena Rukes
- Institute of Bioengineering, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Crystal Vincent
- Department of Biochemistry, School of Biological and Behavioural Sciences, Queen Mary University of London, E1 4NS London, UK
| | - Shu Kondo
- Department of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, 162-8601 Tokyo, Japan
| | - Marc S Dionne
- Centre for Bacterial Resistance Biology and Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Matteo Dal Peraro
- Institute of Bioengineering, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Chan Cao
- Department of Inorganic and Analytical Chemistry, Chemistry and Biochemistry, University of Geneva, 1211 Geneva, Switzerland
| | - Bruno Lemaitre
- Global Health Institute, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
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Wiil J, Sørensen JG, Colinet H. Exploring cross-protective effects between cold and immune stress in Drosophila melanogaster. Parasite 2023; 30:54. [PMID: 38084935 PMCID: PMC10714677 DOI: 10.1051/parasite/2023055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 11/12/2023] [Indexed: 12/18/2023] Open
Abstract
It is well established that environmental and biotic stressors like temperature and pathogens/parasites are essential for the life of small ectotherms. There are complex interactions between cold stress and pathogen infection in insects. Possible cross-protective mechanisms occur between both stressors, suggesting broad connectivity in insect stress responses. In this study, the functional significance of these interactions was tested, as well as the potential role of newly uncovered candidate genes, turandot. This was done using an array of factorial experiments exposing Drosophila melanogaster flies to a combination of different cold stress regimes (acute or chronic) and infections with the parasitic fungus Beauveria bassiana. Following these crossed treatments, phenotypic and molecular responses were assessed by measuring 1) induced cold tolerance, 2) immune resistance to parasitic fungus, and 3) activation of turandot genes. We found various responses in the phenotypic outcomes according to the various treatment combinations with higher susceptibility to infection following cold stress, but also significantly higher acute cold survival in flies that were infected. Regarding molecular responses, we found overexpression of turandot genes in response to most treatments, suggesting reactivity to both cold and infection. Moreover, maximum peak expressions were distinctly observed in the combined treatments (infection plus cold), indicating a marked synergistic effect of the stressors on turandot gene expression patterns. These results reflect the great complexity of cross-tolerance reactions between infection and abiotic stress, but could also shed light on the mechanisms underlying the activation of these responses.
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Affiliation(s)
- Jakob Wiil
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Université de Rennes, CNRS, ECOBIO [(Écosystèmes, biodiversité, évolution)] – UMR 6553 263 AVE du Général Leclerc 35000 Rennes France
| | | | - Hervé Colinet
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Université de Rennes, CNRS, ECOBIO [(Écosystèmes, biodiversité, évolution)] – UMR 6553 263 AVE du Général Leclerc 35000 Rennes France
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Gruntenko NE, Deryuzhenko MA, Andreenkova OV, Shishkina OD, Bobrovskikh MA, Shatskaya NV, Vasiliev GV. Drosophila melanogaster Transcriptome Response to Different Wolbachia Strains. Int J Mol Sci 2023; 24:17411. [PMID: 38139239 PMCID: PMC10743526 DOI: 10.3390/ijms242417411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 11/26/2023] [Accepted: 12/07/2023] [Indexed: 12/24/2023] Open
Abstract
Wolbachia is a maternally inherited, intercellular bacterial symbiont of insects and some other invertebrates. Here, we investigated the effect of two different Wolbachia strains, differing in a large chromosomal inversion, on the differential expression of genes in D. melanogaster females. We revealed significant changes in the transcriptome of the infected flies compared to the uninfected ones, as well as in the transcriptome of flies infected with the Wolbachia strain, wMelPlus, compared to flies infected with the wMelCS112 strain. We linked differentially expressed genes (DEGs) from two pairwise comparisons, "uninfected-wMelPlus-infected" and "uninfected-wMelCS112-infected", into two gene networks, in which the following functional groups were designated: "Proteolysis", "Carbohydrate transport and metabolism", "Oxidation-reduction process", "Embryogenesis", "Transmembrane transport", "Response to stress" and "Alkaline phosphatases". Our data emphasized similarities and differences between infections by different strains under study: a wMelPlus infection results in more than double the number of upregulated DEGs and half the number of downregulated DEGs compared to a wMelCS112 infection. Thus, we demonstrated that Wolbachia made a significant contribution to differential expression of host genes and that the bacterial genotype plays a vital role in establishing the character of this contribution.
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Affiliation(s)
- Nataly E. Gruntenko
- Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia; (M.A.D.); (O.V.A.); (O.D.S.); (M.A.B.); (N.V.S.); (G.V.V.)
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7
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Rokusek B, Cheku S, Rokusek M, Waples CJ, Harshman L, Carlson KA. HoTDAM! An easy-to-use automated assay expands the inducible thermotolerance phenotype in Drosophila melanogaster: Heat hardening reduces motility. Comp Biochem Physiol A Mol Integr Physiol 2023; 286:111522. [PMID: 37742820 PMCID: PMC10593110 DOI: 10.1016/j.cbpa.2023.111522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/20/2023] [Accepted: 09/21/2023] [Indexed: 09/26/2023]
Abstract
To quantify heat tolerance in insects, two manual observation measures are typically implemented: the time to physiological collapse at a static noxious temperature (time to knockdown; TKD) or the temperature at which collapse occurs as temperature increases (critical thermal maximum; CTmax). Both assay modalities focus on physiological collapse, neglecting the prior behavioral processes. In this study, the locomotion response of Drosophila melanogaster to relatively high temperature (39 and 40.5 °C) was quantified using the TriKinetics Drosophila Activity Monitor (DAM2 system). The absence of locomotion was defined as the state of physiological collapse resulting from extended exposure to high temperature. An easy-to-use executable application that allows the user to automatically extract individual TKD from the activity data was developed. For validation, manual TKD assays were performed in parallel to automated assays across multiple factors, including sex, hardening, recovery time after hardening, and assay temperature, which gave similar results. In terms of behavioral aspects, heat hardening consistently led to reduced activity during a subsequent heat stress, irrespective of assay temperature, sex, or recovery time after hardening. Our automated heat tolerance assay utilizing the DAM2 system is one way to expand the scope of the heat tolerance phenotype to include a behavioral component in conjunction with the traditional TKD measure.
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Affiliation(s)
- Blase Rokusek
- Department of Biology, University of Nebraska at Kearney, Kearney, NE 68849, USA
| | - Sunayn Cheku
- Department of Biology, University of Nebraska at Kearney, Kearney, NE 68849, USA
| | - Matthew Rokusek
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE 68588, USA
| | - Christopher J Waples
- Department of Psychology, University of Nebraska at Kearney, Kearney, NE 68849, USA
| | - Lawrence Harshman
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68588, USA
| | - Kimberly A Carlson
- Department of Biology, University of Nebraska at Kearney, Kearney, NE 68849, USA.
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Juul-Kristensen T, Keller JG, Borg KN, Hansen NY, Foldager A, Ladegaard R, Ho YP, Loeschcke V, Knudsen BR. Topoisomerase 1 Activity Is Reduced in Response to Thermal Stress in Fruit Flies and in Human HeLa Cells. BIOSENSORS 2023; 13:950. [PMID: 37998125 PMCID: PMC10669382 DOI: 10.3390/bios13110950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 10/17/2023] [Accepted: 10/18/2023] [Indexed: 11/25/2023]
Abstract
In the modern world with climate changes and increasing pollution, different types of stress are becoming an increasing challenge. Hence, the identification of reliable biomarkers of stress and accessible sensors to measure such biomarkers are attracting increasing attention. In the current study, we demonstrate that the activity, but not the expression, of the ubiquitous enzyme topoisomerase 1 (TOP1), as measured in crude cell extracts by the REEAD sensor system, is markedly reduced in response to thermal stress in both fruit flies (Drosophila melanogaster) and cultivated human cells. This effect was observed in response to both mild-to-moderate long-term heat stress and more severe short-term heat stress in D. melanogaster. In cultivated HeLa cells a reduced TOP1 activity was observed in response to both cold and heat stress. The reduced TOP1 activity appeared dependent on one or more cellular pathways since the activity of purified TOP1 was unaffected by the utilized stress temperatures. We demonstrate successful quantitative measurement of TOP1 activity using an easily accessible chemiluminescence readout for REEAD pointing towards a sensor system suitable for point-of-care assessment of stress responses based on TOP1 as a biomarker.
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Affiliation(s)
- Trine Juul-Kristensen
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
| | - Josephine Geertsen Keller
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
| | - Kathrine Nygaard Borg
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China;
| | - Noriko Y. Hansen
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
| | - Amalie Foldager
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
| | - Rasmus Ladegaard
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
| | - Yi-Ping Ho
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China;
- Centre for Biomaterials, The Chinese University of Hong Kong, Hong Kong SAR, China
- Hong Kong Branch of CAS Center for Excellence in Animal Evolution and Genetics, Hong Kong SAR, China
- State Key Laboratory of Marine Pollution, City University of Hong Kong, Hong Kong SAR, China
| | | | - Birgitta R. Knudsen
- Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark; (T.J.-K.); (J.G.K.); (K.N.B.); (N.Y.H.); (A.F.); (R.L.)
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