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Fanni SC, Colligiani L, Volpi F, Novaria L, Tonerini M, Airoldi C, Plataroti D, Bartholmai BJ, De Liperi A, Neri E, Romei C. Quantitative Chest CT Analysis: Three Different Approaches to Quantify the Burden of Viral Interstitial Pneumonia Using COVID-19 as a Paradigm. J Clin Med 2024; 13:7308. [PMID: 39685766 DOI: 10.3390/jcm13237308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Revised: 11/19/2024] [Accepted: 11/27/2024] [Indexed: 12/18/2024] Open
Abstract
Objectives: To investigate the relationship between COVID-19 pneumonia outcomes and three chest CT analysis approaches. Methods: Patients with COVID-19 pneumonia who underwent chest CT were included and divided into survivors/non-survivors and intubated/not-intubated. Chest CTs were analyzed through a (1) Total Severity Score visually quantified by an emergency (TSS1) and a thoracic radiologist (TSS2); (2) density mask technique quantifying normal parenchyma (DM_Norm 1) and ground glass opacities (DM_GGO1) repeated after the manual delineation of consolidations (DM_Norm2, DM_GGO2, DM_Consolidation); (3) texture analysis quantifying normal parenchyma (TA_Norm) and interstitial lung disease (TA_ILD). Association with outcomes was assessed through Chi-square and the Mann-Whitney test. The TSS inter-reader variability was assessed through intraclass correlation coefficient (ICC) and Bland-Altman analysis. The relationship between quantitative variables and outcomes was investigated through multivariate logistic regression analysis. Variables correlation was investigated using Spearman analysis. Results: Overall, 192 patients (mean age, 66.8 ± 15.4 years) were included. TSS was significantly higher in intubated patients but only TSS1 in survivors. TSS presented an ICC of 0.83 (0.76; 0.88) and a bias (LOA) of 1.55 (-4.69, 7.78). DM_Consolidation showed the greatest median difference between survivors/not survivors (p = 0.002). The strongest independent predictor for mortality was DM_Consolidation (AUC 0.688), while the strongest independent predictor for the intensity of care was TSS2 (0.7498). DM_Norm 2 was the singular feature independently associated with both the outcomes. DM_GGO1 strongly correlated with TA_ILD (ρ = 0.977). Conclusions: The DM technique and TA achieved consistent measurements and a better correlation with patient outcomes.
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Affiliation(s)
- Salvatore Claudio Fanni
- Department of Translational Research, Academic Radiology, University of Pisa, 56126 Pisa, Italy
| | - Leonardo Colligiani
- Department of Translational Research, Academic Radiology, University of Pisa, 56126 Pisa, Italy
| | - Federica Volpi
- Department of Translational Research, Academic Radiology, University of Pisa, 56126 Pisa, Italy
| | - Lisa Novaria
- 2nd Radiology Unit, Department of Diagnostic Imaging, Pisa University-Hospital, Via Paradisa 2, 56100 Pisa, Italy
| | - Michele Tonerini
- Department of Emergency Radiology, Pisa University-Hospital, Via Paradisa 2, 56100 Pisa, Italy
| | - Chiara Airoldi
- Department of Translational Medicine, University of Eastern Piemonte, 13100 Novara, Italy
| | - Dario Plataroti
- Department of Translational Research, Academic Radiology, University of Pisa, 56126 Pisa, Italy
| | | | - Annalisa De Liperi
- 2nd Radiology Unit, Department of Diagnostic Imaging, Pisa University-Hospital, Via Paradisa 2, 56100 Pisa, Italy
| | - Emanuele Neri
- Department of Translational Research, Academic Radiology, University of Pisa, 56126 Pisa, Italy
| | - Chiara Romei
- 2nd Radiology Unit, Department of Diagnostic Imaging, Pisa University-Hospital, Via Paradisa 2, 56100 Pisa, Italy
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Meng H, Wang TD, Zhuo LY, Hao JW, Sui LY, Yang W, Zang LL, Cui JJ, Wang JN, Yin XP. Quantitative radiomics analysis of imaging features in adults and children Mycoplasma pneumonia. Front Med (Lausanne) 2024; 11:1409477. [PMID: 38831994 PMCID: PMC11146305 DOI: 10.3389/fmed.2024.1409477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Accepted: 04/30/2024] [Indexed: 06/05/2024] Open
Abstract
Purpose This study aims to explore the value of clinical features, CT imaging signs, and radiomics features in differentiating between adults and children with Mycoplasma pneumonia and seeking quantitative radiomic representations of CT imaging signs. Materials and methods In a retrospective analysis of 981 cases of mycoplasmal pneumonia patients from November 2021 to December 2023, 590 internal data (adults:450, children: 140) randomly divided into a training set and a validation set with an 8:2 ratio and 391 external test data (adults:121; children:270) were included. Using univariate analysis, CT imaging signs and clinical features with significant differences (p < 0.05) were selected. After segmenting the lesion area on the CT image as the region of interest, 1,904 radiomic features were extracted. Then, Pearson correlation analysis (PCC) and the least absolute shrinkage and selection operator (LASSO) were used to select the radiomic features. Based on the selected features, multivariable logistic regression analysis was used to establish the clinical model, CT image model, radiomic model, and combined model. The predictive performance of each model was evaluated using ROC curves, AUC, sensitivity, specificity, accuracy, and precision. The AUC between each model was compared using the Delong test. Importantly, the radiomics features and quantitative and qualitative CT image features were analyzed using Pearson correlation analysis and analysis of variance, respectively. Results For the individual model, the radiomics model, which was built using 45 selected features, achieved the highest AUCs in the training set, validation set, and external test set, which were 0.995 (0.992, 0.998), 0.952 (0.921, 0.978), and 0.969 (0.953, 0.982), respectively. In all models, the combined model achieved the highest AUCs, which were 0.996 (0.993, 0.998), 0.972 (0.942, 0.995), and 0.986 (0.976, 0.993) in the training set, validation set, and test set, respectively. In addition, we selected 11 radiomics features and CT image features with a correlation coefficient r greater than 0.35. Conclusion The combined model has good diagnostic performance for differentiating between adults and children with mycoplasmal pneumonia, and different CT imaging signs are quantitatively represented by radiomics.
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Affiliation(s)
- Huan Meng
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
| | - Tian-Da Wang
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
| | - Li-Yong Zhuo
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
| | - Jia-Wei Hao
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
| | - Lian-yu Sui
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
| | - Wei Yang
- Department of Radiology, Baoding First Central Hospital, Baoding, China
| | - Li-Li Zang
- Department of Radiology, Baoding Children's Hospital, Baoding, China
| | - Jing-Jing Cui
- Department of Research and Development, United Imaging Intelligence (Beijing) Co., Beijing, China
| | - Jia-Ning Wang
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
| | - Xiao-Ping Yin
- Clinical Medicine School of Hebei University, Baoding, China
- Department of Radiology, Affiliated Hospital of Hebei University, Baoding, China
- Hebei Key Laboratory of Precise Imaging of Inflammation Related Tumors, Baoding, China
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Chen L, Li M, Wu Z, Liu S, Huang Y. A nomogram to predict severe COVID-19 patients with increased pulmonary lesions in early days. Front Med (Lausanne) 2024; 11:1343661. [PMID: 38737763 PMCID: PMC11082326 DOI: 10.3389/fmed.2024.1343661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 03/25/2024] [Indexed: 05/14/2024] Open
Abstract
Objectives This study aimed to predict severe coronavirus disease 2019 (COVID-19) progression in patients with increased pneumonia lesions in the early days. A simplified nomogram was developed utilizing artificial intelligence (AI)-based quantified computed tomography (CT). Methods From 17 December 2019 to 20 February 2020, a total of 246 patients were confirmed COVID-19 infected in Jingzhou Central Hospital, Hubei Province, China. Of these patients, 93 were mildly ill and had follow-up examinations in 7 days, and 61 of them had enlarged lesions on CT scans. We collected the neutrophil-to-lymphocyte ratio (NLR) and three quantitative CT features from two examinations within 7 days. The three quantitative CT features of pneumonia lesions, including ground-glass opacity volume (GV), semi-consolidation volume (SV), and consolidation volume (CV), were automatically calculated using AI. Additionally, the variation volumes of the lesions were also computed. Finally, a nomogram was developed using a multivariable logistic regression model. To simplify the model, we classified all the lesion volumes based on quartiles and curve fitting results. Results Among the 93 patients, 61 patients showed enlarged lesions on CT within 7 days, of whom 19 (31.1%) developed any severe illness. The multivariable logistic regression model included age, NLR on the second time, an increase in lesion volume, and changes in SV and CV in 7 days. The personalized prediction nomogram demonstrated strong discrimination in the sample, with an area under curve (AUC) and the receiver operating characteristic curve (ROC) of 0.961 and a 95% confidence interval (CI) of 0.917-1.000. Decision curve analysis illustrated that a nomogram based on quantitative AI was clinically useful. Conclusion The integration of CT quantitative changes, NLR, and age in this model exhibits promising performance in predicting the progression to severe illness in COVID-19 patients with early-stage pneumonia lesions. This comprehensive approach holds the potential to assist clinical decision-making.
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Affiliation(s)
- Lina Chen
- Department of Radiology, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei Province, China
| | - Min Li
- Department of Radiology, Jingzhou Hospital of Traditional Chinese Medicine, Jingzhou, Hubei Province, China
| | - Zhenghong Wu
- Department of Radiology, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei Province, China
| | - Sibin Liu
- Department of Radiology, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei Province, China
| | - Yuanyi Huang
- Department of Radiology, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei Province, China
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Li Y, Deng W, Zhou Y, Luo Y, Wu Y, Wen J, Cheng L, Liang X, Wu T, Wang F, Huang Z, Tan C, Liu Y. A nomogram based on clinical factors and CT radiomics for predicting anti-MDA5+ DM complicated by RP-ILD. Rheumatology (Oxford) 2024; 63:809-816. [PMID: 37267146 DOI: 10.1093/rheumatology/kead263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 03/30/2023] [Accepted: 05/08/2023] [Indexed: 06/04/2023] Open
Abstract
OBJECTIVES Anti-melanoma differentiation-associated gene 5 antibody-positive (anti-MDA5+) DM complicated by rapidly progressive interstitial lung disease (RP-ILD) has a high incidence and poor prognosis. The objective of this study was to establish a model for the prediction and early diagnosis of anti-MDA5+ DM-associated RP-ILD based on clinical manifestations and imaging features. METHODS A total of 103 patients with anti-MDA5+ DM were included. The patients were randomly split into training and testing sets of 72 and 31 patients, respectively. After image analysis, we collected clinical, imaging and radiomics features from each patient. Feature selection was performed first with the minimum redundancy and maximum relevance algorithm and then with the best subset selection method. The final remaining features comprised the radscore. A clinical model and imaging model were then constructed with the selected independent risk factors for the prediction of non-RP-ILD and RP-ILD. We also combined these models in different ways and compared their predictive abilities. A nomogram was also established. The predictive performances of the models were assessed based on receiver operating characteristics curves, calibration curves, discriminability and clinical utility. RESULTS The analyses showed that two clinical factors, dyspnoea (P = 0.000) and duration of illness in months (P = 0.001), and three radiomics features (P = 0.001, 0.044 and 0.008, separately) were independent predictors of non-RP-ILD and RP-ILD. However, no imaging features were significantly different between the two groups. The radiomics model built with the three radiomics features performed worse than the clinical model and showed areas under the curve (AUCs) of 0.805 and 0.754 in the training and test sets, respectively. The clinical model demonstrated a good predictive ability for RP-ILD in MDA5+ DM patients, with an AUC, sensitivity, specificity and accuracy of 0.954, 0.931, 0.837 and 0.847 in the training set and 0.890, 0.875, 0.800 and 0.774 in the testing set, respectively. The combination model built with clinical and radiomics features performed slightly better than the clinical model, with an AUC, sensitivity, specificity and accuracy of 0.994, 0.966, 0.977 and 0.931 in the training set and 0.890, 0.812, 1.000 and 0.839 in the testing set, respectively. The calibration curve and decision curve analyses showed satisfactory consistency and clinical utility of the nomogram. CONCLUSION Our results suggest that the combination model built with clinical and radiomics features could reliably predict the occurrence of RP-ILD in MDA5+ DM patients.
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Affiliation(s)
- Yanhong Li
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Wen Deng
- Department of Radiology, West China Hospital, Sichuan University, Chengdu, China
| | - Yu Zhou
- Department of Respiratory and Critical Care Medicine, Chengdu First People's Hospital, Chengdu, China
| | - Yubin Luo
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Yinlan Wu
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Ji Wen
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Lu Cheng
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Xiuping Liang
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Tong Wu
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Fang Wang
- Department of Research and Development, Shanghai United Imaging Intelligence, Shanghai, China
| | - Zixing Huang
- Department of Radiology, West China Hospital, Sichuan University, Chengdu, China
| | - Chunyu Tan
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
| | - Yi Liu
- Department of Rheumatology and Immunology, West China Hospital, Sichuan University, Chengdu, China
- Rare Diseases Center, West China Hospital, Sichuan University, Chengdu, China
- Institute of Immunology and Inflammation, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Chengdu, China
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Wei H, Shao Z, Tai J, Fu F, Lv C, Guo Z, Wu Y, Chen L, Bai Y, Wu Q, Yu X, Mu X, Shao F, Wang M. Analysis of CT signs, radiomic features and clinical characteristics for delta variant COVID-19 patients with different vaccination status. BMC Med Imaging 2022; 22:209. [PMID: 36447133 PMCID: PMC9832212 DOI: 10.1186/s12880-022-00937-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 11/14/2022] [Indexed: 11/30/2022] Open
Abstract
OBJECTIVE To explore the characteristics of peripheral blood, high resolution computed tomography (HRCT) imaging and the radiomics signature (RadScore) in patients infected with delta variant virus under different coronavirus disease (COVID-19) vaccination status. METHODS 123 patients with delta variant virus infection collected from November 1, 2021 to March 1, 2022 were analyzed retrospectively. According to COVID-19 vaccination Status, they were divided into three groups: Unvaccinated group, partially vaccinated group and full vaccination group. The peripheral blood, chest HRCT manifestations and RadScore of each group were analyzed and compared. RESULTS The mean lymphocyte count 1.22 ± 0.49 × 10^9/L, CT score 7.29 ± 3.48, RadScore 0.75 ± 0.63 in the unvaccinated group; The mean lymphocyte count 1.55 ± 0.70 × 10^9/L, CT score 5.27 ± 2.72, RadScore 1.03 ± 0.46 in the partially vaccinated group; The mean lymphocyte count 1.87 ± 0.70 × 10^9/L, CT score 3.59 ± 3.14, RadScore 1.23 ± 0.29 in the fully vaccinated group. There were significant differences in lymphocyte count, CT score and RadScore among the three groups (all p < 0.05); Compared with the other two groups, the lung lesions in the unvaccinated group were more involved in multiple lobes, of which 26 cases involved the whole lung. CONCLUSIONS Through the analysis of clinical features, pulmonary imaging features and radiomics, we confirmed the positive effect of COVID-19 vaccine on pulmonary inflammatory symptoms and lymphocyte count (immune system) during delta mutant infection.
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Affiliation(s)
- Huanhuan Wei
- grid.414011.10000 0004 1808 090XAcademy of Medical Sciences, The People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Zehua Shao
- grid.414011.10000 0004 1808 090XHeart Center of Zhengzhou University People’s Hospital, Henan Provincial People’s Hospital, Zhengzhou, 450003 Henan People’s Republic of China
| | - Jianqing Tai
- grid.417239.aThe First People’s Hospital of Zhengzhou, 56 East Street, Zhengzhou, 450004 Henan China
| | - Fangfang Fu
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Chuanjian Lv
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Zhiping Guo
- grid.417239.aThe First People’s Hospital of Zhengzhou, 56 East Street, Zhengzhou, 450004 Henan China
| | - Yaping Wu
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Lijuan Chen
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Yan Bai
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Qingxia Wu
- Beijing United Imaging Research Institute of Intelligent Imaging, Beijing, 100089 China
| | - Xuan Yu
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Xinling Mu
- grid.417239.aThe First People’s Hospital of Zhengzhou, 56 East Street, Zhengzhou, 450004 Henan China
| | - Fengmin Shao
- grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
| | - Meiyun Wang
- grid.414011.10000 0004 1808 090XAcademy of Medical Sciences, The People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China ,grid.414011.10000 0004 1808 090XDepartment of Medical Imaging, Henan Provincial People’s Hospital & the People’s Hospital of Zhengzhou University, 7 Weiwu Road, Zhengzhou, 450003 Henan China
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He JW, Su Y, Qiu ZS, Wu JJ, Chen J, Luo Z, Zhang Y. Steroids Therapy in Patients With Severe COVID-19: Association With Decreasing of Pneumonia Fibrotic Tissue Volume. Front Med (Lausanne) 2022; 9:907727. [PMID: 35911397 PMCID: PMC9329540 DOI: 10.3389/fmed.2022.907727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 06/07/2022] [Indexed: 11/13/2022] Open
Abstract
Background We use longitudinal chest CT images to explore the effect of steroids therapy in COVID-19 pneumonia which caused pulmonary lesion progression. Materials and Methods We retrospectively enrolled 78 patients with severe to critical COVID-19 pneumonia, among which 25 patients (32.1%) who received steroid therapy. Patients were further divided into two groups with severe and significant-severe illness based on clinical symptoms. Serial longitudinal chest CT scans were performed for each patient. Lung tissue was segmented into the five lung lobes and mapped into the five pulmonary tissue type categories based on Hounsfield unit value. The volume changes of normal tissue and pneumonia fibrotic tissue in the entire lung and each five lung lobes were the primary outcomes. In addition, this study calculated the changing percentage of tissue volume relative to baseline value to directly demonstrate the disease progress. Results Steroid therapy was associated with the decrease of pneumonia fibrotic tissue (PFT) volume proportion. For example, after four CT cycles of treatment, the volume reduction percentage of PFT in the entire lung was −59.79[±12.4]% for the steroid-treated patients with severe illness, and its p-value was 0.000 compared to that (−27.54[±85.81]%) in non-steroid-treated ones. However, for the patient with a significant-severe illness, PFT reduction in steroid-treated patients was −41.92[±52.26]%, showing a 0.275 p-value compared to −37.18[±76.49]% in non-steroid-treated ones. The PFT evolution analysis in different lung lobes indicated consistent findings as well. Conclusion Steroid therapy showed a positive effect on the COVID-19 recovery, and its effect was related to the disease severity.
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Affiliation(s)
- Jin-wei He
- School of Information Science and Technology, ShanghaiTech University, Shanghai, China
| | - Ying Su
- Department of Critical Care Medicine, Zhongshan Hospital, Fudan University, Shanghai, China
| | - Ze-song Qiu
- School of Information Science and Technology, ShanghaiTech University, Shanghai, China
| | - Jiang-jie Wu
- School of Information Science and Technology, ShanghaiTech University, Shanghai, China
| | - Jun Chen
- Department of Radiology, Renmin Hospital of Wuhan University, Wuhan, China
| | - Zhe Luo
- Department of Critical Care Medicine, Zhongshan Hospital, Fudan University, Shanghai, China
- *Correspondence: Zhe Luo,
| | - Yuyao Zhang
- School of Information Science and Technology, ShanghaiTech University, Shanghai, China
- iHuman Institute, ShanghaiTech University, Shanghai, China
- Yuyao Zhang,
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Bueno LCM, Paim LR, Minin EOZ, da Silva LM, Mendes PR, Kiyota TA, Schreiber AZ, Bombassaro B, Mansour E, Moretti ML, Chow JTS, Salmena L, Coelho-Filho OR, Velloso LA, Nadruz W, Schreiber R. Increased Serum Mir-150-3p Expression Is Associated with Radiological Lung Injury Improvement in Patients with COVID-19. Viruses 2022; 14:v14071363. [PMID: 35891345 PMCID: PMC9323362 DOI: 10.3390/v14071363] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 05/25/2022] [Accepted: 06/21/2022] [Indexed: 12/04/2022] Open
Abstract
Coronavirus disease 2019 (COVID-19) is caused by the SARS-CoV-2 virus, responsible for an atypical pneumonia that can progress to acute lung injury. MicroRNAs are small non-coding RNAs that control specific genes and pathways. This study evaluated the association between circulating miRNAs and lung injury associated with COVID-19. Methods: We evaluated lung injury by computed tomography at hospital admission and discharge and the serum expression of 754 miRNAs using the TaqMan OpenArray after hospital discharge in 27 patients with COVID-19. In addition, miR-150-3p was validated by qRT-PCR on serum samples collected at admission and after hospital discharge. Results: OpenArray analysis revealed that seven miRNAs were differentially expressed between groups of patients without radiological lung improvement compared to those with lung improvement at hospital discharge, with three miRNAs being upregulated (miR-548c-3p, miR-212-3p, and miR-548a-3p) and four downregulated (miR-191-5p, miR-151a-3p, miR-92a-3p, and miR-150-3p). Bioinformatics analysis revealed that five of these miRNAs had binding sites in the SARS-CoV-2 genome. Validation of miR-150-3p by qRT-PCR confirmed the OpenArray results. Conclusions: The present study shows the potential association between the serum expression of seven miRNAs and lung injury in patients with COVID-19. Furthermore, increased expression of miR-150 was associated with pulmonary improvement at hospital discharge.
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Affiliation(s)
- Larissa C. M. Bueno
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Layde R. Paim
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Eduarda O. Z. Minin
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Luís Miguel da Silva
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Paulo R. Mendes
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Tatiana A. Kiyota
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Angelica Z. Schreiber
- Department of Clinical Pathology, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil;
| | - Bruna Bombassaro
- Obesity and Comorbidities Research Center, University of Campinas, Campinas 13083-864, SP, Brazil;
| | - Eli Mansour
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Maria Luiza Moretti
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Jonathan Tak-Sum Chow
- Department of Pharmacology and Toxicology, University of Toronto, Toronto, ON M5S 1A8, Canada; (J.T.-S.C.); (L.S.)
| | - Leonardo Salmena
- Department of Pharmacology and Toxicology, University of Toronto, Toronto, ON M5S 1A8, Canada; (J.T.-S.C.); (L.S.)
| | - Otavio R. Coelho-Filho
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Licio A. Velloso
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
- Department of Pharmacology and Toxicology, University of Toronto, Toronto, ON M5S 1A8, Canada; (J.T.-S.C.); (L.S.)
| | - Wilson Nadruz
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
| | - Roberto Schreiber
- Department of Internal Medicine, School of Medical Sciences, University of Campinas, Campinas 13083-887, SP, Brazil; (L.C.M.B.); (L.R.P.); (E.O.Z.M.); (L.M.d.S.); (P.R.M.); (T.A.K.); (E.M.); (M.L.M.); (O.R.C.-F.); (L.A.V.); (W.N.)
- Correspondence:
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8
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Ferreira RM, de Oliveira GS, da Rocha JR, Mc Ribeiro FD, Stern JJ, S Costa RD, Lemgruber RN, Ramalho JF, de Almeida AC, Sampaio PP, Filho JM, Lima RA. Biomarker evaluation for prognostic stratification of patients with COVID-19: the added value of quantitative chest CT. Biomark Med 2022; 16:291-301. [PMID: 35176874 PMCID: PMC8855956 DOI: 10.2217/bmm-2021-0536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Aim: Pulmonary disease burden and biomarkers are possible predictors of outcomes in patients with COVID-19 and provide complementary information. In this study, the prognostic value of adding quantitative chest computed tomography (CT) to a multiple biomarker approach was evaluated among 148 hospitalized patients with confirmed COVID-19. Materials & methods: Patients admitted between March and July 2020 who were submitted to chest CT and biomarker measurement (troponin I, D-dimer and C-reactive protein) were retrospectively analyzed. Biomarker and tomographic data were compared and associated with death and intensive care unit admission. Results: The number of elevated biomarkers was significantly associated with greater opacification percentages, lower lung volumes and higher death and intensive care unit admission rates. Total lung volume <3.0 l provided further stratification for mortality when combined with biomarker evaluation. Conclusion: Adding automated CT data to a multiple biomarker approach may provide a simple strategy for enhancing risk stratification of patients with COVID-19.
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Affiliation(s)
- Roberto M Ferreira
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil.,Federal University of Rio de Janeiro, Edson Saad Heart Institute, Rua Rodolpho Paulo Rocco 255, Ilha do Fundão, Rio de Janeiro, RJ, 21941-913, Brazil
| | - Gabriel Ss de Oliveira
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil.,Federal University of Rio de Janeiro, Edson Saad Heart Institute, Rua Rodolpho Paulo Rocco 255, Ilha do Fundão, Rio de Janeiro, RJ, 21941-913, Brazil
| | - João Rf da Rocha
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil.,Federal University of Rio de Janeiro, Edson Saad Heart Institute, Rua Rodolpho Paulo Rocco 255, Ilha do Fundão, Rio de Janeiro, RJ, 21941-913, Brazil
| | - Felipe de Mc Ribeiro
- Felippe Mattoso Clinic, Fleury Group, Rua Bambina 98, Rio de Janeiro, RJ, 22251-060, Brazil
| | - João J Stern
- Felippe Mattoso Clinic, Fleury Group, Rua Bambina 98, Rio de Janeiro, RJ, 22251-060, Brazil
| | - Rangel de S Costa
- Felippe Mattoso Clinic, Fleury Group, Rua Bambina 98, Rio de Janeiro, RJ, 22251-060, Brazil
| | - Ricardo N Lemgruber
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil
| | - Júlia Fp Ramalho
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil
| | | | - Pedro Pn Sampaio
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil.,Federal University of Rio de Janeiro, Edson Saad Heart Institute, Rua Rodolpho Paulo Rocco 255, Ilha do Fundão, Rio de Janeiro, RJ, 21941-913, Brazil
| | - João Mansur Filho
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil
| | - Ricardo Ac Lima
- Samaritano Hospital, Rua Bambina 98, Botafogo, Rio de Janeiro, RJ, 22251-050, Brazil.,Department of General Surgery, Federal University of The State of Rio de Janeiro, Rua Silva Ramos 32, Tijuca, Rio de Janeiro, RJ, 20270-330, Brazil
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9
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Chen C, Zhou J, Zhou K, Wang Z, Xiao R. DW-UNet: Loss Balance under Local-Patch for 3D Infection Segmentation from COVID-19 CT Images. Diagnostics (Basel) 2021; 11:1942. [PMID: 34829289 PMCID: PMC8623821 DOI: 10.3390/diagnostics11111942] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 10/17/2021] [Accepted: 10/18/2021] [Indexed: 12/23/2022] Open
Abstract
(1) Background: COVID-19 has been global epidemic. This work aims to extract 3D infection from COVID-19 CT images; (2) Methods: Firstly, COVID-19 CT images are processed with lung region extraction and data enhancement. In this strategy, gradient changes of voxels in different directions respond to geometric characteristics. Due to the complexity of tubular tissues in lung region, they are clustered to the lung parenchyma center based on their filtered possibility. Thus, infection is improved after data enhancement. Then, deep weighted UNet is established to refining 3D infection texture, and weighted loss function is introduced. It changes cost calculation of different samples, causing target samples to dominate convergence direction. Finally, the trained network effectively extracts 3D infection from CT images by adjusting driving strategy of different samples. (3) Results: Using Accuracy, Precision, Recall and Coincidence rate, 20 subjects from a private dataset and eight subjects from Kaggle Competition COVID-19 CT dataset tested this method in hold-out validation framework. This work achieved good performance both in the private dataset (99.94-00.02%, 60.42-11.25%, 70.79-09.35% and 63.15-08.35%) and public dataset (99.73-00.12%, 77.02-06.06%, 41.23-08.61% and 52.50-08.18%). We also applied some extra indicators to test data augmentation and different models. The statistical tests have verified the significant difference of different models. (4) Conclusions: This study provides a COVID-19 infection segmentation technology, which provides an important prerequisite for the quantitative analysis of COVID-19 CT images.
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Affiliation(s)
- Cheng Chen
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing 100083, China; (C.C.); (K.Z.); (Z.W.)
| | - Jiancang Zhou
- Department of Critical Care Medicine, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou 310016, China;
| | - Kangneng Zhou
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing 100083, China; (C.C.); (K.Z.); (Z.W.)
| | - Zhiliang Wang
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing 100083, China; (C.C.); (K.Z.); (Z.W.)
| | - Ruoxiu Xiao
- School of Computer and Communication Engineering, University of Science and Technology Beijing, Beijing 100083, China; (C.C.); (K.Z.); (Z.W.)
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10
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Xu Z, Zhao L, Yang G, Ren Y, Wu J, Xia Y, Yang X, Cao M, Zhang G, Peng T, Zhao J, Yang H, Hu J, Du J. Severity Assessment of COVID-19 Using a CT-Based Radiomics Model. Stem Cells Int 2021; 2021:2263469. [PMID: 34594383 PMCID: PMC8478587 DOI: 10.1155/2021/2263469] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 08/27/2021] [Indexed: 01/11/2023] Open
Abstract
The coronavirus disease of 2019 (COVID-19) has evolved into a worldwide pandemic. Although CT is sensitive in detecting lesions and assessing their severity, these works mainly depend on radiologists' subjective judgment, which is inefficient in case of a large-scale outbreak. This work focuses on developing a CT-based radiomics model to assess whether COVID-19 patients are in the early, progressive, severe, or absorption stages of the disease. We retrospectively analyzed the CT images of 284 COVID-19 patients. All of the patients were divided into four groups (0-3): early (n = 75), progressive (n = 58), severe (n = 75), and absorption (n = 76) groups, according to the progression of the disease and the CT features. Meanwhile, they were split randomly to training and test datasets with the fixed ratio of 7 : 3 in each category. Thirty-eight radiomic features were nominated from 1688 radiomic features after using select K-best method and the ElasticNet algorithm. On this basis, a support vector machine (SVM) classifier was trained to build this model. Receiver operating characteristic (ROC) curves were generated to determine the diagnostic performance of various models. The precision, recall, and f 1-score of the classification model of macro- and microaverage were 0.82, 0.82, 0.81, 0.81, 0.81, and 0.81 for the training dataset and 0.75, 0.73, 0.73, 0.72, 0.72, and 0.72 for the test dataset. The AUCs for groups 0, 1, 2, and 3 on the training dataset were 0.99, 0.97, 0.96, and 0.93, and the microaverage AUC was 0.97 with a macroaverage AUC of 0.97. On the test dataset, AUCs for each group were 0.97, 0.86, 0.83, and 0.89 and the microaverage AUC was 0.89 with a macroaverage AUC of 0.90. The CT-based radiomics model proved efficacious in assessing the severity of COVID-19.
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Affiliation(s)
- Zhigao Xu
- College of Medical Imaging, Shanxi Medical University, Taiyuan, 030001 Shanxi Province, China
- Department of Radiology, The Third People's Hospital of Datong, Datong, 037008 Shanxi Province, China
| | - Lili Zhao
- Department of Radiology, The Third People's Hospital of Datong, Datong, 037008 Shanxi Province, China
| | - Guoqiang Yang
- College of Medical Imaging, Shanxi Medical University, Taiyuan, 030001 Shanxi Province, China
- Department of Radiology, First Hospital of Shanxi Medical University, Taiyuan, 030001 Shanxi Province, China
| | - Ying Ren
- Department of Materials Science and Engineering, Henan University of Technology, Zhengzhou, 450001 Henan Province, China
| | - Jinlong Wu
- Department of Radiology, The Third People's Hospital of Datong, Datong, 037008 Shanxi Province, China
| | - Yuwei Xia
- Huiying Medical Technology Co., Ltd, Room A206, B2, Dongsheng Science and Technology Park, Haidian District, Beijing City, 100192, China
| | - Xuhong Yang
- Huiying Medical Technology Co., Ltd, Room A206, B2, Dongsheng Science and Technology Park, Haidian District, Beijing City, 100192, China
| | - Milan Cao
- Department of Science and Education, The Third People's Hospital of Datong, Datong, 037008 Shanxi Province, China
| | - Guojiang Zhang
- Department of Science and Education, The Third People's Hospital of Datong, Datong, 037008 Shanxi Province, China
| | - Taisong Peng
- Department of Radiology, The Second People's Hospital of Datong, Datong, 037005 Shanxi Province, China
| | - Jiafeng Zhao
- Department of Rehabilitation Medicine, Xiantao First People's Hospital, Xiantao, 433000 Hubei Province, China
| | - Hui Yang
- Department of Radiology, The Third People's Hospital of Datong, Datong, 037008 Shanxi Province, China
| | - Jinfeng Hu
- Department of Radiology, The Second People's Hospital of Datong, Datong, 037005 Shanxi Province, China
| | - Jiangfeng Du
- College of Medical Imaging, Shanxi Medical University, Taiyuan, 030001 Shanxi Province, China
- Department of Radiology, First Hospital of Shanxi Medical University, Taiyuan, 030001 Shanxi Province, China
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11
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Guo Y, Zhang Y, Lyu T, Prosperi M, Wang F, Xu H, Bian J. The application of artificial intelligence and data integration in COVID-19 studies: a scoping review. J Am Med Inform Assoc 2021; 28:2050-2067. [PMID: 34151987 PMCID: PMC8344463 DOI: 10.1093/jamia/ocab098] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 05/03/2021] [Accepted: 05/06/2021] [Indexed: 12/23/2022] Open
Abstract
OBJECTIVE To summarize how artificial intelligence (AI) is being applied in COVID-19 research and determine whether these AI applications integrated heterogenous data from different sources for modeling. MATERIALS AND METHODS We searched 2 major COVID-19 literature databases, the National Institutes of Health's LitCovid and the World Health Organization's COVID-19 database on March 9, 2021. Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guideline, 2 reviewers independently reviewed all the articles in 2 rounds of screening. RESULTS In the 794 studies included in the final qualitative analysis, we identified 7 key COVID-19 research areas in which AI was applied, including disease forecasting, medical imaging-based diagnosis and prognosis, early detection and prognosis (non-imaging), drug repurposing and early drug discovery, social media data analysis, genomic, transcriptomic, and proteomic data analysis, and other COVID-19 research topics. We also found that there was a lack of heterogenous data integration in these AI applications. DISCUSSION Risk factors relevant to COVID-19 outcomes exist in heterogeneous data sources, including electronic health records, surveillance systems, sociodemographic datasets, and many more. However, most AI applications in COVID-19 research adopted a single-sourced approach that could omit important risk factors and thus lead to biased algorithms. Integrating heterogeneous data for modeling will help realize the full potential of AI algorithms, improve precision, and reduce bias. CONCLUSION There is a lack of data integration in the AI applications in COVID-19 research and a need for a multilevel AI framework that supports the analysis of heterogeneous data from different sources.
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Affiliation(s)
- Yi Guo
- Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, Florida, USA
- Cancer Informatics Shared Resource, University of Florida Health Cancer Center, Gainesville, Florida, USA
| | - Yahan Zhang
- Department of Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, Florida, USA
| | - Tianchen Lyu
- Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, Florida, USA
- Cancer Informatics Shared Resource, University of Florida Health Cancer Center, Gainesville, Florida, USA
| | - Mattia Prosperi
- Department of Epidemiology, College of Public Health and Health Professions & College of Medicine, University of Florida, Gainesville, Florida, USA
| | - Fei Wang
- Department of Population Health Sciences, Weill Cornell Medicine, New York, New York, USA
| | - Hua Xu
- School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA
| | - Jiang Bian
- Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, Florida, USA
- Cancer Informatics Shared Resource, University of Florida Health Cancer Center, Gainesville, Florida, USA
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12
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Laino ME, Ammirabile A, Posa A, Cancian P, Shalaby S, Savevski V, Neri E. The Applications of Artificial Intelligence in Chest Imaging of COVID-19 Patients: A Literature Review. Diagnostics (Basel) 2021; 11:1317. [PMID: 34441252 PMCID: PMC8394327 DOI: 10.3390/diagnostics11081317] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 07/02/2021] [Accepted: 07/09/2021] [Indexed: 12/23/2022] Open
Abstract
Diagnostic imaging is regarded as fundamental in the clinical work-up of patients with a suspected or confirmed COVID-19 infection. Recent progress has been made in diagnostic imaging with the integration of artificial intelligence (AI) and machine learning (ML) algorisms leading to an increase in the accuracy of exam interpretation and to the extraction of prognostic information useful in the decision-making process. Considering the ever expanding imaging data generated amid this pandemic, COVID-19 has catalyzed the rapid expansion in the application of AI to combat disease. In this context, many recent studies have explored the role of AI in each of the presumed applications for COVID-19 infection chest imaging, suggesting that implementing AI applications for chest imaging can be a great asset for fast and precise disease screening, identification and characterization. However, various biases should be overcome in the development of further ML-based algorithms to give them sufficient robustness and reproducibility for their integration into clinical practice. As a result, in this literature review, we will focus on the application of AI in chest imaging, in particular, deep learning, radiomics and advanced imaging as quantitative CT.
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Affiliation(s)
- Maria Elena Laino
- Artificial Intelligence Center, IRCCS Humanitas Research Hospital, via Manzoni 56, Rozzano, 20089 Milan, Italy; (P.C.); (V.S.)
| | - Angela Ammirabile
- Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, Pieve Emanuele, 20072 Milan, Italy;
- Department of Radiology, IRCCS Humanitas Research Hospital, via Manzoni 56, Rozzano, 20089 Milan, Italy
| | - Alessandro Posa
- Department of Diagnostic Imaging, Oncological Radiotherapy and Hematology, Fondazione Policlinico Universitario Agostino Gemelli—IRCCS, 00168 Rome, Italy;
| | - Pierandrea Cancian
- Artificial Intelligence Center, IRCCS Humanitas Research Hospital, via Manzoni 56, Rozzano, 20089 Milan, Italy; (P.C.); (V.S.)
| | - Sherif Shalaby
- Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Via Roma 67, 56126 Pisa, Italy; (S.S.); (E.N.)
| | - Victor Savevski
- Artificial Intelligence Center, IRCCS Humanitas Research Hospital, via Manzoni 56, Rozzano, 20089 Milan, Italy; (P.C.); (V.S.)
| | - Emanuele Neri
- Department of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Via Roma 67, 56126 Pisa, Italy; (S.S.); (E.N.)
- Italian Society of Medical and Interventional Radiology, SIRM Foundation, Via della Signora 2, 20122 Milano, Italy
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13
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KOYUNCU SÖKMEN B, SABET S. Evaluation of Radiologic Findings and Lung Involvement Ratio in RT-PCR Positive Patients With COVID-19 Pneumonia. KAHRAMANMARAŞ SÜTÇÜ İMAM ÜNIVERSITESI TIP FAKÜLTESI DERGISI 2021. [DOI: 10.17517/ksutfd.933505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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14
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Wang L, Jiaerken Y, Li Q, Huang P, Shen Z, Zhao T, Zheng H, Ji W, Gao Y, Xia J, Cheng J, Ma J, Liu J, Liu Y, Su M, Ruan G, Shu J, Ren D, Zhao Z, Yao W, Yang Y, Zhang M. An Illustrated Guide to the Imaging Evolution of COVID in Non-Epidemic Areas of Southeast China. Front Mol Biosci 2021; 8:648180. [PMID: 34124146 PMCID: PMC8195620 DOI: 10.3389/fmolb.2021.648180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Accepted: 04/30/2021] [Indexed: 11/13/2022] Open
Abstract
Purpose: By analyzing the CT manifestations and evolution of COVID in non-epidemic areas of southeast China, analyzing the developmental abnormalities and accompanying signs in the early and late stages of the disease, providing imaging evidence for clinical diagnosis and identification, and assisting in judging disease progression and monitoring prognosis. Methods: This retrospective and multicenter study included 1,648 chest CT examinations from 693 patients with laboratory-confirmed COVID-19 infection from 16 hospitals of southeast China between January 19 and March 27, 2020. Six trained radiologists analyzed and recorded the distribution and location of the lesions in the CT images of these patients. The accompanying signs include crazy-paving sign, bronchial wall thickening, microvascular thickening, bronchogram sign, fibrous lesions, halo and reverse-halo signs, nodules, atelectasis, and pleural effusion, and at the same time, they analyze the evolution of the abovementioned manifestations over time. Result: There were 1,500 positive findings in 1,648 CT examinations of 693 patients; the average age of the patients was 46 years, including 13 children; the proportion of women was 49%. Early CT manifestations are single or multiple nodular, patchy, or flaky ground-glass-like density shadows. The frequency of occurrence of ground-glass shadows (47.27%), fibrous lesions (42.60%), and microvascular thickening (40.60%) was significantly higher than that of other signs. Ground-glass shadows increase and expand 3-7 days after the onset of symptoms. The distribution and location of lesions were not significantly related to the appearance time. Ground-glass shadow is the most common lesion, with an average absorption time of 6.2 days, followed by consolidation, with an absorption time of about 6.3 days. It takes about 8 days for pure ground-glass lesions to absorb. Consolidation change into ground glass or pure ground glass takes 10-14 days. For ground-glass opacity to evolve into pure ground-glass lesions, it takes an average of 17 days. For ground-glass lesions to evolve into consolidation, it takes 7 days, pure ground-glass lesions need 8 days to evolve into ground-glass lesions. The average time for CT signs to improve is 10-15 days, and the first to improve is the crazy-paving sign and nodules; while the progression of the disease is 6-12 days, the earliest signs of progression are air bronchogram signs, bronchial wall thickening, and bronchiectasis. There is no severe patient in this study. Conclusion: This study depicts the CT manifestation and evolution of COVID in non-epidemic origin areas, and provides valuable first-hand information for clinical diagnosis and judgment of patient's disease evolution and prediction.
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Affiliation(s)
- Lihua Wang
- Department of Radiology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | - Yeerfan Jiaerken
- Department of Radiology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | - Qian Li
- Department of Radiology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | - Peiyu Huang
- Department of Radiology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | - Zhujing Shen
- Department of Radiology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | | | | | - Wenbin Ji
- Zhejiang Taizhou Hospital, Taizhou, China
| | - Yuantong Gao
- Radiology Department, Third Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
| | - Junli Xia
- Bozhou Bone Trauma Hospital Image Center, Bozhou, China
| | - Jianmin Cheng
- Department of Radiology, Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, China
| | | | - Jun Liu
- Second Xiangya Hospital, Central South University, Changsha, China
| | | | - Miaoguang Su
- Pingyang County People's Hospital, Wenzhou, China
| | | | - Jiner Shu
- Jinhua Central Hospital, Jinhua, China
| | - Dawei Ren
- Ningbo First Hospital, Ningbo, China
| | | | | | - Yunjun Yang
- Radiology Department, First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
| | - Minming Zhang
- Department of Radiology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
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15
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Rorat M, Jurek T, Simon K, Guziński M. Value of quantitative analysis in lung computed tomography in patients severely ill with COVID-19. PLoS One 2021; 16:e0251946. [PMID: 34015025 PMCID: PMC8136668 DOI: 10.1371/journal.pone.0251946] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Accepted: 05/05/2021] [Indexed: 12/11/2022] Open
Abstract
Introduction Quantitative computed tomography (QCT) is used to objectively assess the degree of parenchymal impairment in COVID-19 pneumonia. Materials and methods Retrospective study on 61 COVID-19 patients (severe and non-severe; 33 men, age 63+/-15 years) who underwent a CT scan due to tachypnea, dyspnoea or desaturation. QCT was performed using VCAR software. Patients’ clinical data was collected, including laboratory results and oxygenation support. The optimal cut-off point for CT parameters for predicting death and respiratory support was performed by maximizing the Youden Index in a receiver operating characteristic (ROC) curve analysis. Results The analysis revealed significantly greater progression of changes: ground-glass opacities (GGO) (31,42% v 13,89%, p<0.001), consolidation (11,85% v 3,32%, p<0.001) in patients with severe disease compared to non-severe disease. Five lobes were involved in all patients with severe disease. In non-severe patients, a positive correlation was found between severity of GGO, consolidation and emphysema and sex, tachypnea, chest x-ray (CXR) score on admission and laboratory parameters: CRP, D-dimer, ALT, lymphocyte count and lymphocyte/neutrophil ratio. In the group of severe patients, a correlation was found between sex, creatinine level and death. ROC analysis on death prediction was used to establish the cut-off point for GGO at 24.3% (AUC 0.8878, 95% CI 0.7889–0.9866; sensitivity 91.7%, specificity 75.5%), 5.6% for consolidation (AUC 0.7466, 95% CI 0.6009–0.8923; sensitivity 83.3%, specificity 59.2%), and 37.8% for total (GGO+consolidation) (AUC 0.8622, 95% CI 0.7525–0.972; sensitivity 75%, specificity 83.7%). The cut-off point for predicting respiratory support was established for GGO at 18.7% (AUC 0.7611, 95% CI 0.6268–0.8954; sensitivity 87.5%, specificity 64.4%), consolidation at 3.88% (AUC 0.7438, 95% CI 0.6146–0.8729; sensitivity 100%, specificity 46.7%), and total at 23.5% (AUC 0.7931, 95% CI 0.673–0.9131; sensitivity 93.8%, specificity 57.8%). Conclusion QCT is a good diagnostic tool which facilitates decision-making regarding intensification of oxygen support and transfer to an intensive care unit in patients severely ill with COVID-19 pneumonia. QCT can make an independent and simple screening tool to assess the risk of death, regardless of clinical symptoms. Usefulness of QCT to predict the risk of death is higher than to assess the indications for respiratory support.
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Affiliation(s)
- Marta Rorat
- Department of Forensic Medicine, Wroclaw Medical University, Wroclaw, Poland
| | - Tomasz Jurek
- Department of Forensic Medicine, Wroclaw Medical University, Wroclaw, Poland
- * E-mail:
| | - Krzysztof Simon
- Department of Infectious Diseases and Hepatology, Wroclaw Medical University, Wroclaw, Poland
| | - Maciej Guziński
- Department of General Radiology, Interventional Radiology and Neuroradiology, Wroclaw Medical University, Wroclaw, Poland
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16
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Chabi ML, Dana O, Kennel T, Gence-Breney A, Salvator H, Ballester MC, Vasse M, Brun AL, Mellot F, Grenier PA. Automated AI-Driven CT Quantification of Lung Disease Predicts Adverse Outcomes in Patients Hospitalized for COVID-19 Pneumonia. Diagnostics (Basel) 2021; 11:diagnostics11050878. [PMID: 34069115 PMCID: PMC8156322 DOI: 10.3390/diagnostics11050878] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/03/2021] [Accepted: 05/09/2021] [Indexed: 12/16/2022] Open
Abstract
The purpose of our work was to assess the independent and incremental value of AI-derived quantitative determination of lung lesions extent on initial CT scan for the prediction of clinical deterioration or death in patients hospitalized with COVID-19 pneumonia. 323 consecutive patients (mean age 65 ± 15 years, 192 men), with laboratory-confirmed COVID-19 and an abnormal chest CT scan, were admitted to the hospital between March and December 2020. The extent of consolidation and all lung opacities were quantified on an initial CT scan using a 3D automatic AI-based software. The outcome was known for all these patients. 85 (26.3%) patients died or experienced clinical deterioration, defined as intensive care unit admission. In multivariate regression based on clinical, biological and CT parameters, the extent of all opacities, and extent of consolidation were independent predictors of adverse outcomes, as were diabetes, heart disease, C-reactive protein, and neutrophils/lymphocytes ratio. The association of CT-derived measures with clinical and biological parameters significantly improved the risk prediction (p = 0.049). Automated quantification of lung disease at CT in COVID-19 pneumonia is useful to predict clinical deterioration or in-hospital death. Its combination with clinical and biological data improves risk prediction.
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Affiliation(s)
- Marie Laure Chabi
- Department of Medical Imaging, Foch Hospital, 92150 Suresnes, France; (M.L.C.); (O.D.); (A.G.-B.); (A.L.B.); (F.M.)
| | - Ophélie Dana
- Department of Medical Imaging, Foch Hospital, 92150 Suresnes, France; (M.L.C.); (O.D.); (A.G.-B.); (A.L.B.); (F.M.)
| | - Titouan Kennel
- Department of Clinical Research and Innovation, Foch Hospital, 92150 Suresnes, France;
| | - Alexia Gence-Breney
- Department of Medical Imaging, Foch Hospital, 92150 Suresnes, France; (M.L.C.); (O.D.); (A.G.-B.); (A.L.B.); (F.M.)
| | - Hélène Salvator
- Department of Pneumology, Foch Hospital, UFR Santé Simone Veil UVSQ Paris-Saclay University, 92150 Suresnes, France;
| | | | - Marc Vasse
- Department of Clinical Biology, Foch Hospital, 92150 Suresnes, France;
- INSERM, UMRS 1176, Paris-Saclay University, 94270 Le Kremlin-Bicêtre, France
| | - Anne Laure Brun
- Department of Medical Imaging, Foch Hospital, 92150 Suresnes, France; (M.L.C.); (O.D.); (A.G.-B.); (A.L.B.); (F.M.)
| | - François Mellot
- Department of Medical Imaging, Foch Hospital, 92150 Suresnes, France; (M.L.C.); (O.D.); (A.G.-B.); (A.L.B.); (F.M.)
| | - Philippe A. Grenier
- Department of Clinical Research and Innovation, Foch Hospital, 92150 Suresnes, France;
- Correspondence:
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17
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Lan L, Sun W, Xu D, Yu M, Xiao F, Hu H, Xu H, Wang X. Artificial intelligence-based approaches for COVID-19 patient management. INTELLIGENT MEDICINE 2021; 1:10-15. [PMID: 34447600 PMCID: PMC8189732 DOI: 10.1016/j.imed.2021.05.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 03/27/2021] [Accepted: 05/21/2021] [Indexed: 01/08/2023]
Abstract
During the highly infectious pandemic of coronavirus disease 2019 (COVID-19), artificial intelligence (AI) has provided support in addressing challenges and accelerating achievements in controlling this public health crisis. It has been applied in fields varying from outbreak forecasting to patient management and drug/vaccine development. In this paper, we specifically review the current status of AI-based approaches for patient management. Limitations and challenges still exist, and further needs are highlighted.
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18
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Gaudêncio AS, Vaz PG, Hilal M, Mahé G, Lederlin M, Humeau-Heurtier A, Cardoso JM. Evaluation of COVID-19 chest computed tomography: A texture analysis based on three-dimensional entropy. Biomed Signal Process Control 2021; 68:102582. [PMID: 33824680 PMCID: PMC8015668 DOI: 10.1016/j.bspc.2021.102582] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 03/17/2021] [Accepted: 03/26/2021] [Indexed: 12/11/2022]
Abstract
Radiologists, and doctors in general, need relevant information for the quantification and characterization of pulmonary structures damaged by severe diseases, such as the Coronavirus disease 2019 (COVID-19). Texture-based analysis in scope of other pulmonary diseases has been used to screen, monitor, and provide valuable information for several kinds of diagnoses. To differentiate COVID-19 patients from healthy subjects and patients with other pulmonary diseases is crucial. Our goal is to quantify lung modifications in two pulmonary pathologies: COVID-19 and idiopathic pulmonary fibrosis (IPF). For this purpose, we propose the use of a three-dimensional multiscale fuzzy entropy (MFE3D) algorithm. The three groups tested (COVID-19 patients, IPF, and healthy subjects) were found to be statistically different for 9 scale factors ( p < 0.01 ). A complexity index (CI) based on the sum of entropy values is used to classify healthy subjects and COVID-19 patients showing an accuracy of 89.6 % , a sensitivity of 96.1 % , and a specificity of 76.9 % . Moreover, 4 different machine-learning models were also used to classify the same COVID-19 dataset for comparison purposes.
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Affiliation(s)
- Andreia S Gaudêncio
- LIBPhys-UC, Department of Physics, University of Coimbra, Coimbra, 3004-516, Portugal
| | - Pedro G Vaz
- LIBPhys-UC, Department of Physics, University of Coimbra, Coimbra, 3004-516, Portugal
| | - Mirvana Hilal
- Univ Angers, LARIS - Laboratoire Angevin de Recherche en Ingénierie des Systèmes, 62 Avenue Notre-Dame du Lac, Angers, 49000, France
| | | | | | - Anne Humeau-Heurtier
- Univ Angers, LARIS - Laboratoire Angevin de Recherche en Ingénierie des Systèmes, 62 Avenue Notre-Dame du Lac, Angers, 49000, France
| | - João M Cardoso
- LIBPhys-UC, Department of Physics, University of Coimbra, Coimbra, 3004-516, Portugal
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19
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Budak Ü, Çıbuk M, Cömert Z, Şengür A. Efficient COVID-19 Segmentation from CT Slices Exploiting Semantic Segmentation with Integrated Attention Mechanism. J Digit Imaging 2021; 34:263-272. [PMID: 33674979 PMCID: PMC7935480 DOI: 10.1007/s10278-021-00434-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 02/12/2021] [Accepted: 02/17/2021] [Indexed: 12/24/2022] Open
Abstract
Coronavirus (COVID-19) is a pandemic, which caused suddenly unexplained pneumonia cases and caused a devastating effect on global public health. Computerized tomography (CT) is one of the most effective tools for COVID-19 screening. Since some specific patterns such as bilateral, peripheral, and basal predominant ground-glass opacity, multifocal patchy consolidation, crazy-paving pattern with a peripheral distribution can be observed in CT images and these patterns have been declared as the findings of COVID-19 infection. For patient monitoring, diagnosis and segmentation of COVID-19, which spreads into the lung, expeditiously and accurately from CT, will provide vital information about the stage of the disease. In this work, we proposed a SegNet-based network using the attention gate (AG) mechanism for the automatic segmentation of COVID-19 regions in CT images. AGs can be easily integrated into standard convolutional neural network (CNN) architectures with a minimum computing load as well as increasing model precision and predictive accuracy. Besides, the success of the proposed network has been evaluated based on dice, Tversky, and focal Tversky loss functions to deal with low sensitivity arising from the small lesions. The experiments were carried out using a fivefold cross-validation technique on a COVID-19 CT segmentation database containing 473 CT images. The obtained sensitivity, specificity, and dice scores were reported as 92.73%, 99.51%, and 89.61%, respectively. The superiority of the proposed method has been highlighted by comparing with the results reported in previous studies and it is thought that it will be an auxiliary tool that accurately detects automatic COVID-19 regions from CT images.
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Affiliation(s)
- Ümit Budak
- Department of Electrical and Electronics Engineering, Bitlis Eren University, Bitlis, Turkey.
| | - Musa Çıbuk
- Department of Computer Engineering, Bitlis Eren University, Bitlis, Turkey
| | - Zafer Cömert
- Department of Software Engineering, Samsun University, Samsun, Turkey
| | - Abdulkadir Şengür
- Department of Electrical-Electronics Engineering, Technology Faculty, Firat University, Elazig, Turkey
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20
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Chen Q, Chen L, Liu S, Chen L, Li M, Chen Z, You J, Zhang B, Zhang S. Three-Dimensional CT for Quantification of Longitudinal Lung and Pneumonia Variations in COVID-19 Patients. Front Med (Lausanne) 2021; 8:643917. [PMID: 33842505 PMCID: PMC8027238 DOI: 10.3389/fmed.2021.643917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Accepted: 02/04/2021] [Indexed: 11/21/2022] Open
Abstract
Objectives: Visual chest CT is subjective with interobserver variability. We aimed to quantify the dynamic changes of lung and pneumonia on three-dimensional CT (3D-CT) images in coronavirus disease 2019 (COVID-19) patients during hospitalization. Methods: A total of 110 laboratory-confirmed COVID-19 patients who underwent chest CT from January 3 to February 29, 2020 were retrospectively reviewed. Pneumonia lesions were classified as four stages: early, progressive, peak, and absorption stages on chest CT. A computer-aided diagnostic (CAD) system calculated the total lung volume (TLV), the percentage of low attenuation areas (LAA%), the volume of pneumonia, the volume of ground-glass opacities (GGO), the volume of consolidation plus the GGO/consolidation ratio. The CT score was visually assessed by radiologists. Comparisons of lung and pneumonia parameters among the four stages were performed by one-way ANOVA with post-hoc tests. The relationship between the CT score and the volume of pneumonia, and between LAA% and the volume of pneumonia in four stages was assessed by Spearman's rank correlation analysis. Results: A total of 534 chest CT scans were performed with a median interval of 4 days. TLV, LAA%, and the GGO/consolidation ratio were significantly decreased, while the volume of pneumonia, GGO, and consolidation were significantly increased in the progressive and peak stages (for all, P < 0.05). The CT score was significantly correlated with the pneumonia volume in the four stages (r = 0.731, 0.761, 0.715, and 0.669, respectively, P < 0.001). Conclusion: 3D-CT could be used as a useful quantification method in monitoring the dynamic changes of COVID-19 pneumonia.
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Affiliation(s)
- Qiuying Chen
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Lv Chen
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Shuyi Liu
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Luyan Chen
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Minmin Li
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Zhuozhi Chen
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Jingjing You
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Bin Zhang
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
| | - Shuixing Zhang
- Department of Radiology, The First Affiliated Hospital of Jinan University, Guangzhou, China
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21
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Kassin MT, Varble N, Blain M, Xu S, Turkbey EB, Harmon S, Yang D, Xu Z, Roth H, Xu D, Flores M, Amalou A, Sun K, Kadri S, Patella F, Cariati M, Scarabelli A, Stellato E, Ierardi AM, Carrafiello G, An P, Turkbey B, Wood BJ. Generalized chest CT and lab curves throughout the course of COVID-19. Sci Rep 2021; 11:6940. [PMID: 33767213 PMCID: PMC7994835 DOI: 10.1038/s41598-021-85694-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 03/03/2021] [Indexed: 12/16/2022] Open
Abstract
A better understanding of temporal relationships between chest CT and labs may provide a reference for disease severity over the disease course. Generalized curves of lung opacity volume and density over time can be used as standardized references from well before symptoms develop to over a month after recovery, when residual lung opacities remain. 739 patients with COVID-19 underwent CT and RT-PCR in an outbreak setting between January 21st and April 12th, 2020. 29 of 739 patients had serial exams (121 CTs and 279 laboratory measurements) over 50 ± 16 days, with an average of 4.2 sequential CTs each. Sequential volumes of total lung, overall opacity and opacity subtypes (ground glass opacity [GGO] and consolidation) were extracted using deep learning and manual segmentation. Generalized temporal curves of CT and laboratory measurements were correlated. Lung opacities appeared 3.4 ± 2.2 days prior to symptom onset. Opacity peaked 1 day after symptom onset. GGO onset was earlier and resolved later than consolidation. Lactate dehydrogenase, and C-reactive protein peaked earlier than procalcitonin and leukopenia. The temporal relationships of quantitative CT features and clinical labs have distinctive patterns and peaks in relation to symptom onset, which may inform early clinical course in patients with mild COVID-19 pneumonia, or may shed light upon chronic lung effects or mechanisms of medical countermeasures in clinical trials.
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Affiliation(s)
- Michael T Kassin
- Center for Interventional Oncology, Radiology and Imaging Sciences, NIH Clinical Center and National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
- Radiology and Imaging Sciences, NIH Clinical Center, National Institutes of Health, Bethesda, MD, 20892-1182, USA
| | - Nicole Varble
- Center for Interventional Oncology, Radiology and Imaging Sciences, NIH Clinical Center and National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
- Philips Research North America, Cambridge, MA, 02141, USA
| | - Maxime Blain
- Center for Interventional Oncology, Radiology and Imaging Sciences, NIH Clinical Center and National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Sheng Xu
- Center for Interventional Oncology, Radiology and Imaging Sciences, NIH Clinical Center and National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Evrim B Turkbey
- Radiology and Imaging Sciences, NIH Clinical Center, National Institutes of Health, Bethesda, MD, 20892-1182, USA
| | - Stephanie Harmon
- National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
- Clinical Research Directorate, Frederick National Laboratory for Cancer Research, NCI, Frederick, MD, 21702, USA
- Molecular Imaging Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Dong Yang
- NVIDIA Corporation, Bethesda, MD, 20892, USA
| | - Ziyue Xu
- NVIDIA Corporation, Bethesda, MD, 20892, USA
| | - Holger Roth
- NVIDIA Corporation, Bethesda, MD, 20892, USA
| | - Daguang Xu
- NVIDIA Corporation, Bethesda, MD, 20892, USA
| | - Mona Flores
- NVIDIA Corporation, Santa Clara, CA, 95051, USA
| | - Amel Amalou
- Center for Interventional Oncology, Radiology and Imaging Sciences, NIH Clinical Center and National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Kaiyun Sun
- Division of International Epidemiology and Population Studies, Fogarty International Center, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Sameer Kadri
- Critical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Francesca Patella
- Diagnostic and Interventional Radiology Service, ASST Santi Paolo e Carlo, Milan, Italy
| | - Maurizio Cariati
- Diagnostic and Interventional Radiology Service, ASST Santi Paolo e Carlo, Milan, Italy
| | - Alice Scarabelli
- Postgraduate School of Diagnostic and Interventional Radiology, University of Milan, Milan, Italy
| | - Elvira Stellato
- Postgraduate School of Diagnostic and Interventional Radiology, University of Milan, Milan, Italy
| | - Anna Maria Ierardi
- Department of Radiology and Department of Health Sciences, Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico and University of Milano, 20122, Milan, Italy
| | - Gianpaolo Carrafiello
- Department of Radiology and Department of Health Sciences, Fondazione IRCCS Cà Granda Ospedale Maggiore Policlinico and University of Milano, 20122, Milan, Italy
| | - Peng An
- Department of Radiology, Xiangyang NO. 1 People's Hospital Affiliated to Hubei University of Medicine, Xiangyang, Hubei, 441000, China
| | - Baris Turkbey
- National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
- Molecular Imaging Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA
| | - Bradford J Wood
- Center for Interventional Oncology, Radiology and Imaging Sciences, NIH Clinical Center and National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
- Radiology and Imaging Sciences, NIH Clinical Center, National Institutes of Health, Bethesda, MD, 20892-1182, USA.
- National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
- National Institute of Biomedical Imaging and Bioengineering, Bethesda, MD, 20892, USA.
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22
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Timaran-Montenegro DE, Torres-Ramírez CA, Morales-Jaramillo LM, Mateo-Camacho YS, Tapia-Rangel EA, Fuentes-Badillo KD, Hernández-Rojas AM, Morales-Domínguez V, Saenz-Castillo PF, Parra-Guerrero LM, Jacome-Portilla KI, Obrando-Bravo DE, Contla-Trejo GS, Falla-Trujillo MG, Punzo-Alcaraz GR, Feria-Arroyo GA, Chávez-Sastre AJ, Govea-Palma J, Carrillo-Álvarez S, Orozco-Vázquez JDS. Computed Tomography-based Lung Residual Volume and Mortality of Patients With Coronavirus Disease-19 (COVID-19). J Thorac Imaging 2021; 36:65-72. [PMID: 33600123 DOI: 10.1097/rti.0000000000000572] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
RATIONALE AND OBJECTIVES To assess the effect of computed tomography (CT)-based residual lung volume (RLV) on mortality of patients with coronavirus disease 2019 (COVID-19). MATERIALS AND METHODS A single-center, retrospective study of a prospectively maintained database was performed. In total, 138 patients with COVID-19 were enrolled. Baseline chest CT scan was performed in all patients. CT-based automated and semi-automated lung segmentation was performed using the Alma Medical workstation to calculate normal lung volume, lung opacities volume, total lung volume, and RLV. The primary end point of the study was mortality. Univariate and multivariate analyses were performed to determine independent predictors of mortality. RESULTS Overall, 84 men (61%) and 54 women (39%) with a mean age of 47.3 years (±14.3 y) were included in the study. Overall mortality rate was 21% (29 patients) at a median time of 7 days (interquartile range, 4 to 11 d). Univariate analysis demonstrated that age, hypertension, and diabetes were associated with death (P<0.01). Similarly, patients who died had lower normal lung volume and RLV than patients who survived (P<0.01). Multivariate analysis demonstrated that low RLV was the only independent predictor of death (odds ratio, 1.042; 95% confidence interval, 10.2-10.65). Furthermore, receiver operating characteristic curve analysis demonstrated that a RLV ≤64% significantly increased the risk of death (odds ratio, 4.8; 95% confidence interval, 1.9-11.7). CONCLUSION Overall mortality of patients with COVID-19 may reach 21%. Univariate and multivariate analyses demonstrated that reduced RLV was the principal independent predictor of death. Furthermore, RLV ≤64% is associated with a 4-fold increase on the risk of death.
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23
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Sagnelli C, Celia B, Monari C, Cirillo S, De Angelis G, Bianco A, Coppola N. Management of SARS-CoV-2 pneumonia. J Med Virol 2021; 93:1276-1287. [PMID: 32856728 PMCID: PMC7461283 DOI: 10.1002/jmv.26470] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 08/21/2020] [Accepted: 08/24/2020] [Indexed: 12/19/2022]
Abstract
Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) infection has rapidly spread throughout the world since December 2019 to become a global public health emergency for the elevated deaths and hospitalizations in Intensive Care Units. The severity spectrum of SARS-CoV-2 pneumonia ranges from mild to severe clinical conditions. The clinical course of SARS-CoV-2 disease is correlated with multiple factors including host characteristics (genetics, immune status, age, and general health), viral load and, above all, the host distribution of the airways and lungs of the viral receptor cells. In this review, we will briefly summarize the current knowledge of the characteristics and management of coronavirus disease 2019-pneumonia. However, other studies are needed to better understand the pathogenetic mechanisms induced by SARS-Cov-2 infection, and to evaluate the long-term consequences of the virus on the lungs.
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Affiliation(s)
- Caterina Sagnelli
- Section of Infectious Diseases, Department of Mental health and Public MedicineUniversity of Campania “Luigi Vanvitelli”NaplesItaly
| | - Benito Celia
- Department of Translational Medical SciencesUniversity of Campania “Luigi Vanvitelli”NaplesItaly
| | - Caterina Monari
- Section of Infectious Diseases, Department of Mental health and Public MedicineUniversity of Campania “Luigi Vanvitelli”NaplesItaly
| | - Salvatore Cirillo
- Department of Translational Medical SciencesUniversity of Campania “Luigi Vanvitelli”NaplesItaly
| | - Giulia De Angelis
- Section of Infectious Diseases, Department of Mental health and Public MedicineUniversity of Campania “Luigi Vanvitelli”NaplesItaly
| | - Andrea Bianco
- Department of Translational Medical SciencesUniversity of Campania “Luigi Vanvitelli”NaplesItaly
| | - Nicola Coppola
- Section of Infectious Diseases, Department of Mental health and Public MedicineUniversity of Campania “Luigi Vanvitelli”NaplesItaly
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24
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Canovi S, Besutti G, Bonelli E, Iotti V, Ottone M, Albertazzi L, Zerbini A, Pattacini P, Giorgi Rossi P, Colla R, Fasano T. The association between clinical laboratory data and chest CT findings explains disease severity in a large Italian cohort of COVID-19 patients. BMC Infect Dis 2021; 21:157. [PMID: 33557778 PMCID: PMC7868898 DOI: 10.1186/s12879-021-05855-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Accepted: 01/28/2021] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Laboratory data and computed tomography (CT) have been used during the COVID-19 pandemic, mainly to determine patient prognosis and guide clinical management. The aim of this study was to evaluate the association between CT findings and laboratory data in a cohort of COVID-19 patients. METHODS This was an observational cross-sectional study including consecutive patients presenting to the Reggio Emilia (Italy) province emergency rooms for suspected COVID-19 for one month during the outbreak peak, who underwent chest CT scan and laboratory testing at presentation and resulted positive for SARS-CoV-2. RESULTS Included were 866 patients. Total leukocytes, neutrophils, C-reactive protein (CRP), creatinine, AST, ALT and LDH increase with worsening parenchymal involvement; an increase in platelets was appreciable with the highest burden of lung involvement. A decrease in lymphocyte counts paralleled worsening parenchymal extension, along with reduced arterial oxygen partial pressure and saturation. After correcting for parenchymal extension, ground-glass opacities were associated with reduced platelets and increased procalcitonin, consolidation with increased CRP and reduced oxygen saturation. CONCLUSIONS Pulmonary lesions induced by SARS-CoV-2 infection were associated with raised inflammatory response, impaired gas exchange and end-organ damage. These data suggest that lung lesions probably exert a central role in COVID-19 pathogenesis and clinical presentation.
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Affiliation(s)
- Simone Canovi
- Clinical chemistry and Endocrinology Laboratory, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento 80, 42123, Reggio Emilia, Italy.
| | - Giulia Besutti
- Radiology Unit, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy.,Clinical and Experimental Medicine PhD program, University of Modena and Reggio Emilia, Modena, Italy
| | - Efrem Bonelli
- Clinical chemistry and Endocrinology Laboratory, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento 80, 42123, Reggio Emilia, Italy.,Radiology Unit, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy
| | - Valentina Iotti
- Radiology Unit, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy
| | - Marta Ottone
- Epidemiology Unit, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy
| | - Laura Albertazzi
- Clinical chemistry and Endocrinology Laboratory, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento 80, 42123, Reggio Emilia, Italy
| | - Alessandro Zerbini
- Laboratory of autoimmunity, allergology and innovative biotechnologies, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy
| | - Pierpaolo Pattacini
- Radiology Unit, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy
| | - Paolo Giorgi Rossi
- Epidemiology Unit, AUSL-IRCCS di Reggio Emilia, viale Risorgimento, 80, 42123, Reggio Emilia, Italy
| | - Rossana Colla
- Clinical chemistry and Endocrinology Laboratory, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento 80, 42123, Reggio Emilia, Italy
| | - Tommaso Fasano
- Clinical chemistry and Endocrinology Laboratory, Departement of Diagnostic Imaging and Laboratory Medicine, AUSL-IRCCS di Reggio Emilia, viale Risorgimento 80, 42123, Reggio Emilia, Italy
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Marchenko SP, Scarlatescu E, Vogt PR, Naumov A, Bognenko S. Intermittent High-Frequency Percussive Ventilation Therapy in 3 Patients with Severe COVID-19 Pneumonia. AMERICAN JOURNAL OF CASE REPORTS 2021; 22:e928421. [PMID: 33542171 PMCID: PMC7872946 DOI: 10.12659/ajcr.928421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 12/22/2020] [Accepted: 11/13/2020] [Indexed: 11/25/2022]
Abstract
BACKGROUND High-frequency percussive ventilation (HFPV) is a method that combines mechanical ventilation with high-frequency oscillatory ventilation. This report describes 3 cases of patients with severe COVID-19 pneumonia who received intermittent adjunctive treatment with HFPV at a single center without requiring admission to the Intensive Care Unit (ICU). CASE REPORT Case 1 was a 60-year-old woman admitted to the hospital 14 days after the onset of SARS-CoV-2 infection symptoms, and cases 2 and 3 were men aged 65 and 72 years who were admitted to the hospital 10 days after the onset of SARS-CoV-2 infection symptoms. All 3 patients presented with clinical deterioration accompanied by worsening lung lesions on computed tomography (CT) scans after 21 days from the onset of symptoms. SARS-CoV-2 infection was confirmed in all patients by real-time reverse transcription-polymerase chain reaction (RT-PCR) assay from nasal swabs. All 3 patients had impending respiratory failure when non-invasive intermittent HFPV therapy was initiated. After therapy, the patients had significant clinical improvement and visibly decreased lung lesions on followup CT scans performed 4-6 days later. CONCLUSIONS The 3 cases described in this report showed that the use of intermittent adjunctive treatment with HFPV in patients with severe pneumonia due to infection with SARS-CoV-2 improved lung function and may have prevented clinical deterioration. However, recommendations on the use of intermittent HFPV as an adjunctive treatment in COVID-19 pneumonia requires large-scale controlled clinical studies. In the pandemic context, with a shortage of ICU beds, avoiding ICU admission by using adjunctive therapies on the ward is a useful option.
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Affiliation(s)
- Sergey P. Marchenko
- Department of Cardiac Surgery, Pavlov First St. Petersburg Medical University, St. Petersburg, Russian Federation
| | - Ecaterina Scarlatescu
- Department of Anaesthesia and Intensive Care Medicine III, Fundeni Clinical Institute, Bucharest, Romania
| | | | - Alexey Naumov
- Department of Cardiac Surgery, Pavlov First St. Petersburg Medical University, St. Petersburg, Russian Federation
| | - Sergey Bognenko
- Department of Cardiac Surgery, Pavlov First St. Petersburg Medical University, St. Petersburg, Russian Federation
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26
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Syeda HB, Syed M, Sexton KW, Syed S, Begum S, Syed F, Prior F, Yu F. Role of Machine Learning Techniques to Tackle the COVID-19 Crisis: Systematic Review. JMIR Med Inform 2021; 9:e23811. [PMID: 33326405 PMCID: PMC7806275 DOI: 10.2196/23811] [Citation(s) in RCA: 74] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 10/27/2020] [Accepted: 11/15/2020] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND SARS-CoV-2, the novel coronavirus responsible for COVID-19, has caused havoc worldwide, with patients presenting a spectrum of complications that have pushed health care experts to explore new technological solutions and treatment plans. Artificial Intelligence (AI)-based technologies have played a substantial role in solving complex problems, and several organizations have been swift to adopt and customize these technologies in response to the challenges posed by the COVID-19 pandemic. OBJECTIVE The objective of this study was to conduct a systematic review of the literature on the role of AI as a comprehensive and decisive technology to fight the COVID-19 crisis in the fields of epidemiology, diagnosis, and disease progression. METHODS A systematic search of PubMed, Web of Science, and CINAHL databases was performed according to PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analysis) guidelines to identify all potentially relevant studies published and made available online between December 1, 2019, and June 27, 2020. The search syntax was built using keywords specific to COVID-19 and AI. RESULTS The search strategy resulted in 419 articles published and made available online during the aforementioned period. Of these, 130 publications were selected for further analyses. These publications were classified into 3 themes based on AI applications employed to combat the COVID-19 crisis: Computational Epidemiology, Early Detection and Diagnosis, and Disease Progression. Of the 130 studies, 71 (54.6%) focused on predicting the COVID-19 outbreak, the impact of containment policies, and potential drug discoveries, which were classified under the Computational Epidemiology theme. Next, 40 of 130 (30.8%) studies that applied AI techniques to detect COVID-19 by using patients' radiological images or laboratory test results were classified under the Early Detection and Diagnosis theme. Finally, 19 of the 130 studies (14.6%) that focused on predicting disease progression, outcomes (ie, recovery and mortality), length of hospital stay, and number of days spent in the intensive care unit for patients with COVID-19 were classified under the Disease Progression theme. CONCLUSIONS In this systematic review, we assembled studies in the current COVID-19 literature that utilized AI-based methods to provide insights into different COVID-19 themes. Our findings highlight important variables, data types, and available COVID-19 resources that can assist in facilitating clinical and translational research.
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Affiliation(s)
- Hafsa Bareen Syeda
- Department of Neurology, University of Arkansas for Medical Sciences, Little Rock, AR, United States
| | - Mahanazuddin Syed
- Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States
| | - Kevin Wayne Sexton
- Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States
- Department of Surgery, University of Arkansas for Medical Sciences, Little Rock, AR, United States
- Department of Health Policy and Management, University of Arkansas for Medical Sciences, Little Rock, AR, United States
| | - Shorabuddin Syed
- Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States
| | - Salma Begum
- Department of Information Technology, University of Arkansas for Medical Sciences, Little Rock, AR, United States
| | - Farhanuddin Syed
- College of Medicine, Shadan Institute of Medical Sciences, Hyderabad, India
| | - Fred Prior
- Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States
- Department of Radiology, University of Arkansas for Medical Sciences, Little Rock, AR, United States
| | - Feliciano Yu
- Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States
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Cai W, Liu T, Xue X, Luo G, Wang X, Shen Y, Fang Q, Sheng J, Chen F, Liang T. CT Quantification and Machine-learning Models for Assessment of Disease Severity and Prognosis of COVID-19 Patients. Acad Radiol 2020; 27:1665-1678. [PMID: 33046370 PMCID: PMC7505599 DOI: 10.1016/j.acra.2020.09.004] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 09/08/2020] [Accepted: 09/14/2020] [Indexed: 12/28/2022]
Abstract
OBJECTIVE This study was to investigate the CT quantification of COVID-19 pneumonia and its impacts on the assessment of disease severity and the prediction of clinical outcomes in the management of COVID-19 patients. MATERIALS METHODS Ninety-nine COVID-19 patients who were confirmed by positive nucleic acid test (NAT) of RT-PCR and hospitalized from January 19, 2020 to February 19, 2020 were collected for this retrospective study. All patients underwent arterial blood gas test, routine blood test, chest CT examination, and physical examination on admission. In addition, follow-up clinical data including the disease severity, clinical treatment, and clinical outcomes were collected for each patient. Lung volume, lesion volume, nonlesion lung volume (NLLV) (lung volume - lesion volume), and fraction of nonlesion lung volume (%NLLV) (nonlesion lung volume / lung volume) were quantified in CT images by using two U-Net models trained for segmentation of lung and COVID-19 lesions in CT images. Furthermore, we calculated 20 histogram textures for lesions volume and NLLV, respectively. To investigate the validity of CT quantification in the management of COVID-19, we built random forest (RF) models for the purpose of classification and regression to assess the disease severity (Moderate, Severe, and Critical) and to predict the need and length of ICU stay, the duration of oxygen inhalation, hospitalization, sputum NAT-positive, and patient prognosis. The performance of RF classifiers was evaluated using the area under the receiver operating characteristic curves (AUC) and that of RF regressors using the root-mean-square error. RESULTS Patients were classified into three groups of disease severity: moderate (n = 25), severe (n = 47) and critical (n = 27), according to the clinical staging. Of which, a total of 32 patients, 1 (1/25) moderate, 6 (6/47) severe, and 25 critical (25/27), respectively, were admitted to ICU. The median values of ICU stay were 0, 0, and 12 days, the duration of oxygen inhalation 10, 15, and 28 days, the hospitalization 12, 16, and 28 days, and the sputum NAT-positive 8, 9, and 13 days, in three severity groups, respectively. The clinical outcomes were complete recovery (n = 3), partial recovery with residual pulmonary damage (n = 80), prolonged recovery (n = 15), and death (n = 1). The %NLLV in three severity groups were 92.18 ± 9.89%, 82.94 ± 16.49%, and 66.19 ± 24.15% with p value <0.05 among each two groups. The AUCs of RF classifiers using hybrid models were 0.927 and 0.929 in classification of moderate vs (severe + critical), and severe vs critical, respectively, which were significantly higher than either radiomics models or clinical models (p < 0.05). The root-mean-square errors of RF regressors were 0.88 weeks for prediction of duration of hospitalization (mean: 2.60 ± 1.01 weeks), 0.92 weeks for duration of oxygen inhalation (mean: 2.44 ± 1.08 weeks), 0.90 weeks for duration of sputum NAT-positive (mean: 1.59 ± 0.98 weeks), and 0.69 weeks for stay of ICU (mean: 1.32 ± 0.67 weeks), respectively. The AUCs for prediction of ICU treatment and prognosis (partial recovery vs prolonged recovery) were 0.945 and 0.960, respectively. CONCLUSION CT quantification and machine-learning models show great potentials for assisting decision-making in the management of COVID-19 patients by assessing disease severity and predicting clinical outcomes.
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Affiliation(s)
- Wenli Cai
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School.
| | - Tianyu Liu
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School
| | - Xing Xue
- Department of Radiology, The First Affiliated Hospital, Zhejiang University School of Medicine
| | - Guibo Luo
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School
| | - Xiaoli Wang
- Department of Radiology, The First Affiliated Hospital, Zhejiang University School of Medicine
| | - Yihong Shen
- Department of Respiratory Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine
| | - Qiang Fang
- Intensive Care Unit, The First Affiliated Hospital, Zhejiang University School of Medicine
| | - Jifang Sheng
- The State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine
| | - Feng Chen
- Department of Radiology, The First Affiliated Hospital, Zhejiang University School of Medicine
| | - Tingbo Liang
- Department of Hepatobiliary Pancreatic Surgery, The First Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang Provincial Key Laboratory of Pancreatic Disease, Innovation Center for the Study of Pancreatic Diseases, Hangzhou China
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28
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Quispe-Cholan A, Anticona-De-La-Cruz Y, Cornejo-Cruz M, Quispe-Chirinos O, Moreno-Lazaro V, Chavez-Cruzado E. Tomographic findings in patients with COVID-19 according to evolution of the disease. EGYPTIAN JOURNAL OF RADIOLOGY AND NUCLEAR MEDICINE 2020. [PMCID: PMC7590569 DOI: 10.1186/s43055-020-00329-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Background The tomographic findings in COVID-19, its classification, a brief overview of the application of artificial intelligence, and the stages during the course of the disease in patients with moderate COVID-19 Main body Chest CT allows us to follow the course of COVID-19 in an objective way; each phase has characteristic imaging findings and, consequently, takes the corresponding measures. A search was made in the PubMed database with the keywords extracted from the DeCs and the combinations of these. Only articles published between December 2019 and June 2020 were included. The search was limited to the English language. Conclusions CT serves to monitor the course of the disease since it assesses the severity of lung involvement. The most frequent finding is bilateral ground glass opacities with a subpleural distribution. The progression occurs in two phases: one slow and one fast. At discharge, the patient may have ground glass opacities or areas that will later become fibrosis, leaving sequelae for life.
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29
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Pugliese L, Sbordone FP, Grimaldi F, Ricci F, DI Tosto F, Spiritigliozzi L, DI Donna C, Presicce M, DE Stasio V, Benelli L, D'Errico F, Pasqualetto M, Legramante JM, Materazzo M, Pellicciaro M, Buonomo OC, Vanni G, Rizza S, Bellia A, Floris R, Garaci F, Chiocchi M. Chest Computed Tomography Scoring in Patients With Novel Coronavirus-infected Pneumonia: Correlation With Clinical and Laboratory Features and Disease Outcome. In Vivo 2020; 34:3735-3746. [PMID: 33144492 DOI: 10.21873/invivo.12223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 09/23/2020] [Accepted: 09/24/2020] [Indexed: 12/15/2022]
Abstract
BACKGROUND/AIM This study investigated the correlation of chest computed tomography (CT), findings, graded using two different scoring methods, with clinical and laboratory features and disease outcome, including a novel clinical predictive score, in patients with novel coronavirus-infected pneumonia (NCIP). PATIENTS AND METHODS In this retrospective, observational study, CT scan of 92 NCIP patients admitted to Policlinico Tor Vergata, were analyzed using a quantitative, computed-based and a semiquantitative, radiologist-assessed scoring system. Correlations of the two radiological scores with clinical and laboratory features, the CALL score, and their association with a composite adverse outcome were assessed. RESULTS The two scores correlated significantly with each other (ρ=0.637, p<0.0001) and were independently associated with age, LDH, estimated glomerular filtration rate, diabetes, and with the composite outcome, which occurred in 24 patients. CONCLUSION In NCIP patients, two different radiological scores correlated with each other and with several clinical, laboratory features, and the CALL score. The quantitative score was a better independent predictor of the composite adverse outcome than the semiquantitative score.
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Affiliation(s)
- Luca Pugliese
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Francesco Paolo Sbordone
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Francesco Grimaldi
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Francesca Ricci
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Federica DI Tosto
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Luigi Spiritigliozzi
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Carlo DI Donna
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Matteo Presicce
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Vincenzo DE Stasio
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Leonardo Benelli
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Francesca D'Errico
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Monia Pasqualetto
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Jacopo Maria Legramante
- Department of System Medicine, Tor Vergata University, and Emergency Department, Rome, Italy
| | - Marco Materazzo
- Breast Unit, Department of Surgical Science, Policlinico Tor Vergata University, Rome, Italy
| | - Marco Pellicciaro
- Breast Unit, Department of Surgical Science, Policlinico Tor Vergata University, Rome, Italy
| | - Oreste Claudio Buonomo
- Breast Unit, Department of Surgical Science, Policlinico Tor Vergata University, Rome, Italy
| | - Gianluca Vanni
- Breast Unit, Department of Surgical Science, Policlinico Tor Vergata University, Rome, Italy
| | - Stefano Rizza
- Department of System Medicine, Tor Vergata University, and Department of Medical Sciences, Policlinico Tor Vergata, Rome, Italy
| | - Alfonso Bellia
- Department of System Medicine, Tor Vergata University, and Department of Medical Sciences, Policlinico Tor Vergata, Rome, Italy
| | - Roberto Floris
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Francesco Garaci
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
| | - Marcello Chiocchi
- Department of Biomedicine and Prevention, Division of Diagnostic Imaging, Tor Vergata University, and Unit of Diagnostic Imaging, Policlinico Tor Vergata, Rome, Italy
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Ragab DA, Attallah O. FUSI-CAD: Coronavirus (COVID-19) diagnosis based on the fusion of CNNs and handcrafted features. PeerJ Comput Sci 2020; 6:e306. [PMID: 33816957 PMCID: PMC7924442 DOI: 10.7717/peerj-cs.306] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 09/30/2020] [Indexed: 05/19/2023]
Abstract
The precise and rapid diagnosis of coronavirus (COVID-19) at the very primary stage helps doctors to manage patients in high workload conditions. In addition, it prevents the spread of this pandemic virus. Computer-aided diagnosis (CAD) based on artificial intelligence (AI) techniques can be used to distinguish between COVID-19 and non-COVID-19 from the computed tomography (CT) imaging. Furthermore, the CAD systems are capable of delivering an accurate faster COVID-19 diagnosis, which consequently saves time for the disease control and provides an efficient diagnosis compared to laboratory tests. In this study, a novel CAD system called FUSI-CAD based on AI techniques is proposed. Almost all the methods in the literature are based on individual convolutional neural networks (CNN). Consequently, the FUSI-CAD system is based on the fusion of multiple different CNN architectures with three handcrafted features including statistical features and textural analysis features such as discrete wavelet transform (DWT), and the grey level co-occurrence matrix (GLCM) which were not previously utilized in coronavirus diagnosis. The SARS-CoV-2 CT-scan dataset is used to test the performance of the proposed FUSI-CAD. The results show that the proposed system could accurately differentiate between COVID-19 and non-COVID-19 images, as the accuracy achieved is 99%. Additionally, the system proved to be reliable as well. This is because the sensitivity, specificity, and precision attained to 99%. In addition, the diagnostics odds ratio (DOR) is ≥ 100. Furthermore, the results are compared with recent related studies based on the same dataset. The comparison verifies the competence of the proposed FUSI-CAD over the other related CAD systems. Thus, the novel FUSI-CAD system can be employed in real diagnostic scenarios for achieving accurate testing for COVID-19 and avoiding human misdiagnosis that might exist due to human fatigue. It can also reduce the time and exertion made by the radiologists during the examination process.
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Affiliation(s)
- Dina A. Ragab
- Electronics and Communications Engineering Department, Arab Academy for Science, Technology, and Maritime Transport (AASTMT), Alexandria, Egypt
| | - Omneya Attallah
- Electronics and Communications Engineering Department, Arab Academy for Science, Technology, and Maritime Transport (AASTMT), Alexandria, Egypt
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31
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Dynamic evaluation of lung involvement during coronavirus disease-2019 (COVID-19) with quantitative lung CT. Emerg Radiol 2020; 27:671-678. [PMID: 33037946 PMCID: PMC7547301 DOI: 10.1007/s10140-020-01856-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Accepted: 09/24/2020] [Indexed: 12/23/2022]
Abstract
Purpose To identify and quantify lung changes associated with coronavirus disease-2019 (COVID-19) with quantitative lung CT during the disease. Methods This retrospective study reviewed COVID-19 patients who underwent multiple chest CT scans during their disease course. Quantitative lung CT was used to determine the nature and volume of lung involvement. A semi-quantitative scoring system was also used to evaluate lung lesions. Results This study included eighteen cases (4 cases in mild type, 10 cases in moderate type, 4 cases in severe type, and without critical type cases) with confirmed COVID-19. Patients had a mean hospitalized period of 24.1 ± 7.1 days (range: 14–38 days) and underwent an average CT scans of 3.9 ± 1.6 (range: 2–8). The total volumes of lung abnormalities reached a peak of 8.8 ± 4.1 days (range: 2–14 days). The ground-glass opacity (GGO) volume percentage was higher than the consolidative opacity (CO) volume percentage on the first CT examination (Z = 2.229, P = 0.026), and there was no significant difference between the GGO volume percentage and that of CO at the peak stage (Z = - 0.628, P = 0.53). The volume percentage of lung involvement identified by AI demonstrated a strong correlation with the total CT scores at each stage (r = 0.873, P = 0.0001). Conclusions Quantitative lung CT can automatically identify the nature of lung involvement and quantify the dynamic changes of lung lesions on CT during COVID-19. For patients who recovered from COVID-19, GGO was the predominant imaging feature on the initial CT scan, while GGO and CO were the main appearances at peak stage. Electronic supplementary material The online version of this article (10.1007/s10140-020-01856-4) contains supplementary material, which is available to authorized users.
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Keller N, Chantrel F, Krummel T, Bazin-Kara D, Faller AL, Muller C, Nussbaumer T, Ismer M, Benmoussa A, Brahim-Bouna M, Beier S, Perrin P, Hannedouche T. Impact of first-wave COronaVIrus disease 2019 infection in patients on haemoDIALysis in Alsace: the observational COVIDIAL study. Nephrol Dial Transplant 2020; 35:1338-1411. [PMID: 32871594 PMCID: PMC7499735 DOI: 10.1093/ndt/gfaa170] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 06/10/2020] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND There are only scarce data regarding the presentation, incidence, severity and outcomes of coronavirus disease 2019 (COVID-19) in patients undergoing long-term haemodialysis (HD). A prospective observational study was conducted in eight HD facilities in Alsace, France, to identify clinical characteristics of HD patients with COVID-19 and to assess the determinants of the risk of death. METHODS All HD patients tested positive for COVID-19 from 5 March to 28 April 2020 were included. Collected data included patient characteristics, clinical features at diagnosis, laboratory data, treatments and outcomes. RESULTS Among 1346 HD patients, 123 tested positive for COVID-19. Patients had a median age of 77 years (interquartile range 66-83), with a high number of comorbidities (3.2 ± 1.6 per patient). Symptoms were compatible in 63% of patients. Asthenia (77%), diarrhoea (34%) and anorexia (32%) were frequent at diagnosis. The delay between the onset of symptoms and diagnosis, death or complete recovery was 2 (0-5), 7 (4-11) and 32 (26.5-35) days, respectively. Treatment, including lopinavir/ritonavir, hydroxychloroquine and corticosteroids, was administered in 23% of patients. The median C-reactive protein (CRP) and lymphocyte count at diagnosis was 55 mg/L (IQR 25-106) and 690 Ly/µL (IQR 450-960), respectively. The case fatality rate was 24% and determinants associated with the risk of death were body temperature {hazard ratio [HR] 1.96 [95% confidence interval (CI) 1.11-3.44]; P = 0.02} and CRP at diagnosis [HR 1.01 (95% CI 1.005-1.017); P < 0.0001]. CONCLUSIONS HD patients were found to be at high risk of developing COVID-19 and exhibited a high rate of mortality. While patients presented severe forms of the disease, they often displayed atypical symptoms, with the CRP level being highly associated with the risk of death.
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Affiliation(s)
- Nicolas Keller
- Department of Nephrology and Dialysis, Strasbourg University Hospital, Strasbourg, France
| | - François Chantrel
- Department of Nephrology, Groupe Hospitalier de la région de Mulhouse et Sud-Alsace GHR-msa, Mulhouse, France.,AURAL Association Dialysis centre, Mulhouse, France
| | - Thierry Krummel
- Department of Nephrology and Dialysis, Strasbourg University Hospital, Strasbourg, France
| | - Dorothée Bazin-Kara
- Department of Nephrology and Dialysis, Strasbourg University Hospital, Strasbourg, France
| | - Anne Laure Faller
- Department of Nephrology and Dialysis, Clinique St Anne, Strasbourg, France.,AURAL Association Dialysis centre, Strasbourg, France
| | - Clotilde Muller
- Department of Nephrology and Dialysis, Clinique St Anne, Strasbourg, France.,AURAL Association Dialysis centre, Strasbourg, France
| | - Thimothée Nussbaumer
- Department of Nephrology and Dialysis, Hôpitaux Civils de Colmar, Colmar, France.,AURAL Association Dialysis centre, Colmar, France
| | - Manfred Ismer
- Department of Nephrology and Dialysis, Hôpitaux Civils de Colmar, Colmar, France.,AURAL Association Dialysis centre, Colmar, France
| | | | | | | | - Peggy Perrin
- Department of Nephrology and Transplantation, Strasbourg University Hospital, Strasbourg, France
| | - Theirry Hannedouche
- Department of Nephrology and Dialysis, Strasbourg University Hospital, Strasbourg, France.,AURAL Association Dialysis centre, Strasbourg, France
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