Trade-off between BCG vaccination and the ability to detect and treat latent tuberculosis

Modeling the dynamics of the COVID-19 population in Australia: A probabilistic analysis

The novel coronavirus COVID-19 arrived on Australian shores around 25 January 2020. This paper presents a novel method of dynamically modeling and forecasting the COVID-19 pandemic in Australia with a high degree of accuracy and in a timely manner using limited data; a valuable resource that can be used to guide government decision-making on societal restrictions on a daily and/or weekly basis. The "partially-observable stochastic process" used in this study predicts not only the future actual values with extremely low error, but also the percentage of unobserved COVID-19 cases in the population. The model can further assist policy makers to assess the effectiveness of several possible alternative scenarios in their decision-making processes.

A structured Markov chain model to investigate the effects of pre-exposure vaccines in tuberculosis control

In this paper, the interest is in a structured Markov chain model to describe the transmission dynamics of tuberculosis (TB) in the setting of small communities of hosts sharing confined spaces, and to explore the potential impact of new pre-exposure vaccines on reducing the number of new TB cases during an outbreak of the disease. The model under consideration incorporates endogenous reactivation of latent tubercle bacilli, exogenous reinfection of latently infected TB hosts, loss of effectiveness of the vaccine protection, and death of hosts due to tubercle bacilli and from causes beyond TB. Various probabilistic measures are defined and analytically studied to describe extreme values and the number of vaccinations during an outbreak, and a random version of the basic reproduction number is used to measure the transmission potential during the initial phase of the epidemic. Our numerical experiments allow us to compare different pre-exposure vaccines versus the level of coverage in terms of these probabilistic measures.

A systematic review of BCG vaccination policies among high-risk groups in low TB-burden countries: implications for vaccination strategy in Canadian indigenous communities

BACKGROUND

Bacille Calmette-Guérin (BCG) vaccination against tuberculosis (TB) is widespread in high-TB-burden countries, however, BCG vaccination policies in low-burden countries vary. Considering the uncertainties surrounding BCG efficacy and the lower likelihood of TB exposure in low-incidence countries, most have discontinued mass vaccination, choosing instead a targeted vaccination strategy among high-risk groups. Given the increased risk of TB infection in Canadian Indigenous communities compared to the general Canadian population, these communities are a pertinent example of high-incidence groups in an otherwise low-burden country, warranting particular consideration regarding BCG vaccination strategy. This systematic review aims to synthesise and critically appraise the literature on BCG vaccination strategies in high-risk groups in low-incidence settings to provide policy considerations relevant to the Canadian Indigenous context.

METHODS

A literature search of the Medline and Embase databases was conducted, returning studies pertaining to BCG vaccine efficacy, TB incidence under specific vaccination policies, BCG-associated adverse events, and vaccination policy guidelines in low-burden countries. Study screening was tracked using the Covidence systematic review software (Veritas Health Innovation, Melbourne, Australia), and data pertaining to the above points of interest were extracted.

RESULTS

The final review included 49 studies, spanning 15 countries. Although almost all of these countries had implemented a form of mass or routine vaccination previously, 11 have since moved to targeted vaccination of selected risk groups, in most cases due to the low risk of infection among the general population and thus the high number of vaccinations needed to prevent one case in the context of low-incidence settings. Regarding identifying risk groups for targeted screening, community-based (rather than individual risk-factor-based) vaccination has been found to be beneficial in high-incidence communities within low-incidence countries, suggesting this approach may be beneficial in the Canadian Indigenous setting.

CONCLUSIONS

Community-based vaccination of high-incidence communities may be beneficial in the Canadian Indigenous context, however, where BCG vaccination is implemented, delivery strategies and potential barriers to achieving adequate coverage in this setting should be considered. Where an existing vaccination program is discontinued, it is crucial that an effective TB surveillance system is in place, and that case-finding, screening, and diagnostic efforts are strengthened in order to ensure adequate TB control. This is particularly relevant in Canadian Indigenous and other remote or under-served communities, where barriers to surveillance, screening, and diagnosis persist.

Mathematical analysis of a tuberculosis model with imperfect vaccine

Since 1921, the Bacille Calmette–Guerin (BCG) vaccine continues to be the most widely used vaccine for the prevention of Tuberculosis (TB). However, the immunity induced by BCG wanes out after some time making the vaccinated individual susceptible to TB infection. In this work, we formulate a mathematical model that incorporates the vaccination of newly born children and older susceptible individuals in the transmission dynamics of TB in a population, with a vaccine that can confer protection on older susceptible individuals. In the absence of disease-induced deaths, the model is shown to undergo the phenomenon of backward bifurcation where a stable disease-free equilibrium (DFE) co-exists with a stable positive (endemic) equilibrium when the associated reproduction number is less than unity. It is shown that this phenomenon does not exist in the absence of imperfect vaccine, exogenous reinfection, and reinfection of previously treated individuals. It is further shown that a special case of the model has a unique endemic equilibrium point (EEP), which is globally asymptotically stable when the associated reproduction number exceeds unity. Uncertainty and sensitivity analysis are carried out to identify key parameters that have the greatest influence on the transmission dynamics of TB in the population using the total population of latently infected individuals, total number of actively infected individuals, disease incidence, and the effective reproduction number as output responses. The analysis shows that the top five parameters of the model that have the greatest influence on the effective reproduction number of the model are the transmission rate, the fraction of fast disease progression, modification parameter which accounts for reduced likelihood to infection by vaccinated individuals due to imperfect vaccine, rate of progression from latent to active TB, and the treatment rate of actively infected individuals, with other key parameters influencing the outcomes of the other output responses. Numerical simulations suggest that with higher vaccination rate of older susceptible individuals, fewer new born children need to be vaccinated, in order to achieve disease eradication.

Evaluating vaccination strategies for tuberculosis in endemic and non-endemic settings

According to the World Health Organization, tuberculosis (TB) is the leading cause of death from infectious disease worldwide (WHO, 2017). While there is no effective vaccine against adult pulmonary TB, more than a dozen vaccine candidates are in the clinical trial pipeline. These include both pre-exposure vaccines to prevent initial infections and post-exposure vaccines to prevent reactivation of latent disease. Many epidemiological models have been used to study TB, but most have not included a continuous age structure and the possibility of both pre- and post-exposure vaccination. Incorporating age-dependent death rates, disease properties, and social contact data allows for more realistic modeling of disease spread. We propose a continuous age-structured model for the epidemiology of tuberculosis with pre- and post-exposure vaccination. We use uncertainty and sensitivity analysis to make predictions about the efficacy of different vaccination strategies in a non-endemic setting (United States) and an endemic setting (Cambodia). In particular, we determine optimal age groups to target for pre-exposure and post-exposure vaccination in both settings. We find that the optimal age groups tend to be younger for Cambodia than for the US, and that post-exposure vaccination has a significantly larger effect than pre-exposure vaccination in the US.

Quantifying TB transmission: a systematic review of reproduction number and serial interval estimates for tuberculosis

Tuberculosis (TB) is the leading global infectious cause of death. Understanding TB transmission is critical to creating policies and monitoring the disease with the end goal of TB elimination. To our knowledge, there has been no systematic review of key transmission parameters for TB. We carried out a systematic review of the published literature to identify studies estimating either of the two key TB transmission parameters: the serial interval (SI) and the reproductive number. We identified five publications that estimated the SI and 56 publications that estimated the reproductive number. The SI estimates from four studies were: 0.57, 1.42, 1.44 and 1.65 years; the fifth paper presented age-specific estimates ranging from 20 to 30 years (for infants <1 year old) to <5 years (for adults). The reproductive number estimates ranged from 0.24 in the Netherlands (during 1933-2007) to 4.3 in China in 2012. We found a limited number of publications and many high TB burden settings were not represented. Certain features of TB dynamics, such as slow transmission, complicated parameter estimation, require novel methods. Additional efforts to estimate these parameters for TB are needed so that we can monitor and evaluate interventions designed to achieve TB elimination.

On Binomial Observations of Continuous-Time Markovian Population Models

In this paper we consider a class of stochastic processes based on binomial observations of continuous-time, Markovian population models. We derive the conditional probability mass function of the next binomial observation given a set of binomial observations. For this purpose, we first find the conditional probability mass function of the underlying continuous-time Markovian population model, given a set of binomial observations, by exploiting a conditional Bayes' theorem from filtering, and then use the law of total probability to find the former. This result paves the way for further study of the stochastic process introduced by the binomial observations. We utilize our results to show that binomial observations of the simple birth process are non-Markovian.

On Binomial Observations of Continuous-Time Markovian Population Models

In this paper we consider a class of stochastic processes based on binomial observations of continuous-time, Markovian population models. We derive the conditional probability mass function of the next binomial observation given a set of binomial observations. For this purpose, we first find the conditional probability mass function of the underlying continuous-time Markovian population model, given a set of binomial observations, by exploiting a conditional Bayes' theorem from filtering, and then use the law of total probability to find the former. This result paves the way for further study of the stochastic process introduced by the binomial observations. We utilize our results to show that binomial observations of the simple birth process are non-Markovian.