Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats

Development of the Karun macroinvertebrate tolerance index (KMTI) for semi-arid mountainous streams in Iran

The most robust approach to ecological monitoring and assessment is the use of regionally calibrated indicators. These should be calculated based on collocated biological (response) and physicochemical (stressor) variables and an objective rating and scoring system. In developing countries, a frequent lack of financial and technical resources for monitoring has led to many environmental problems being overlooked, such as the degradation of streams, rivers, and watersheds. In this paper, we propose the Karun Macroinvertebrate Tolerance Index (KMTI) for application to rivers in the Karun River basin, which is the largest watershed in Iran, draining semi-arid mountainous regions. The KMTI is the first biological index specifically developed and calibrated for Iranian water resources. Benthic macroinvertebrates, physical habitat, hydromorphic, and water quality data were collected and measured at 54 sites across four seasons in 2018 and 2019. A total of 101 families of benthic macroinvertebrates belonging to eight classes and 21 orders were identified, and tolerance values were determined for 95 families. The KMTI was found to be most efficient in identifying ecological degradation when data were used from winter samples with a discrimination efficiency (DE) 90% and a four-season mean of 84.3%. Also, the best DE of the water quality classification table based on the KMTI index was equal to 86.9%.

Selecting Comparator Sites for Ecological Causal Assessment Based on Expected Biological Similarity

Sites in poor ecological condition often require causal assessment to determine appropriate follow-up actions. Site-specific causal assessments can be time consuming. To streamline the process, we describe a quantitative method that expedites a key component of causal assessment: identifying a group of ecologically similar (comparator) sites that are used to compare and contrast biological condition and stressor exposure at the site of interest. A good set of comparator sites should: 1. Be capable of supporting similar biota to the impaired site in the absence of disturbance; 2. Comprise a gradient of biotic condition; and 3. Contain enough sites to assess variability. We used expected biological similarity to select good sets of comparator sites from a large pool of potential sites. Expected biological similarity was measured as Bray-Curtis dissimilarity values (BC) calculated from the expected benthic macroinvertebrate taxa lists produced by a predictive biotic index of stream health. Sets of comparator sites were created for 15 demonstration sites across Southern California in poor condition. We examined the stressor and biological data collected at the 15 sites and their comparators to assess the likelihood that four example stressors - total nitrogen, ammonia, specific conductivity, and bifenthrin - contribute to the poor biotic conditions that were observed. We were able to select more than 100 comparator sites for all but 1 of the 15 demonstration sites at a BC <0.1. These sets of comparator sites were then used to evaluate the four example stressors using two commonly used causal assessment types of evidence. Elevated conductivity was the most frequently supported likely cause among the demonstration sites, though total nitrogen and bifenthrin were also indicated at some sites. Though our specific approach was tailored for application in California's stream bioassessment framework, the concepts could be adapted for any bioassessment program with a large amount of sample data and an associated predictive index of biotic condition. Furthermore, this approach lays the groundwork for developing a novel approach to causal assessment that begins with a rapid, screening-level evaluation of stressors common in a region using these data-rich groups of comparator sites, which then informs follow-up management actions.

Comparison of Acute and Chronic Toxicity Laboratory Bioassay Endpoints with Benthic Community Responses in Field-Exposed Contaminated Sediments

Sediment toxicity is usually assessed by conducting laboratory bioassays on thoroughly homogenized, field-collected, sediment samples. Although it is generally held that these bioassays provide a conservative assessment of the potential for environmental impact, there are few studies comparing the results of laboratory sediment bioassays with actual measures of benthic community health in exposed field populations. To help inform an understanding of the relative efficacy of laboratory-based bioassays in predicting potential impacts in exposed field populations, a laboratory-to-field comparison study was conducted. Laboratory bioassays included standard 10-d acute toxicity tests measuring survival in 4 species of estuarine/marine amphipods (Eohaustorius estuarius, Ampelisca abdita, Rhepoxinius abronius, and Leptocheirus plumulosus) and 2 longer term, 28-d sublethal tests with a marine polychaete, Neanthes arenaceodentata (survival and growth), and the amphipod L. plumulosus (survival, growth, and reproduction). A highly contaminated and toxic sediment was mixed with a cleaner sediment of similar grain size to produce a series of diluted contaminated sediment treatments (0, 6, 12, 25, and 50%). Sediment treatments were placed in containers and deployed in the field. At specified intervals (at time of deployment and 9 and 12 mo post deployment), containers were retrieved from the field and analyzed for sediment chemistry, infaunal community composition, and toxicity. Laboratory toxicity endpoints were compared with measures of benthic community health to evaluate the ability of the toxicity tests to accurately predict benthic impacts. The results of these comparisons indicate that the laboratory tests evaluated provide conservative estimates of potential benthic community impacts, with both acute and chronic tests detecting effects at lower treatment levels than were detected in exposed field populations using traditional measures of benthic community health. Environ Toxicol Chem 2019;38:1784-1802. Published 2019 Wiley Periodicals, Inc. on behalf of SETAC. This article is a US government work, and as such, is in the public domain in the United States of America.

Forever young: The successful story of a marine biotic index

In 2000, the AZTI's Marine Biotic Index (AMBI) was published and was one of a number of marine benthic indices development to assess the ecological status of soft-bottom macroinvertebrates. This index, and its derivatives, has been very successful in its application to different geographical areas, across the world, as well as to different environments, from the intertidal to the abyssal, or from tidal freshwater to offshore habitats. In this review, we explain the story behind the AMBI development, and look for an explanation of the index's success. For doing that, we comment on the current practicalities of the index, we present the new AMBI species list, with 9251 taxa, we dismantle six myths around this index, and examine the past and the future of the index. We show that the solid ecological roots of the index make it a robust tool to assess the status of marine benthic communities, at any time and environment. Hence, we think that it will be 'forever young' helping managers in taking informed decisions to improve benthic marine systems.

Macrobenthic community characteristics and ecological health of a constructed intertidal oyster reef in the Yangtze Estuary, China

Development of substrate organisms (oysters, barnacles) and the health of a monitored oyster reef were investigated in the Yangtze Estuary. Very low salinity suppressed oyster survival. Nevertheless, middle- to high-salinity significantly increased the abundance and biomass of substrate organisms, and macrobenthos species and diversity. Long-term variation in substrate organisms was steady after a major fluctuation, yet the macrobenthic community structure lagged behind that of oysters. Overall, the oyster reef was in a healthy state. The M-AMBI results showed that its ecological status under high-salinity was better than medium-salinity conditions. Redundancy analysis indicated these results were associated with changes in water salinity and substrate factors. Taken together, our results suggest this constructed intertidal oyster reef has had a positive effect on the community and health status of macrobenthos in the Yangtze Estuary. Further, these ecological benefits increased going from medium- to high-salinity waters, but were generally absent under low salinity.

Long-term (1998-2010) large-scale comparison of the ecological quality status of gulf of lions (NW Mediterranean) benthic habitats

A comprehensive Mediterranean data set has been used to address 3 questions associated with the use of sensitivity/tolerance based biotic indices to infer the Ecological Quality status (EcoQs) of benthic habitats. Our results showed: (1) a significant effect of the reference database on derived sensitivity/tolerance measure (ES500.05) as well as associated Benthic Quality Index values and derived EcoQs; (2) a lack of correlation neither between BQI and AZTI Marine Biotic Index values nor between BQI and Multivariate-AZTI Marine Biotic Index values; (3) a lack of correlation between the values of the Benthic Habitat Quality Index (index derived from Sediment Profile Imagery) and those of either of the 3 tested biotic indices; and (4) a general agreement between the 3 tested biotic indices in describing the lack of global trend for the EcoQs of the Gulf of Lions despite the occurrence of significant changes in benthic macrofauna composition between 1998 and 2010.

Environmental and anthropogenic factors affecting the probability of occurrence of Oncomegas wageneri (Cestoda: Trypanorhyncha) in the southern Gulf of Mexico

Background

Understanding the environmental and anthropogenic factors influencing the probability of occurrence of the marine parasitic species is fundamental for determining the circumstances under which they can act as bioindicators of environmental impact. The aim of this study was to determine whether physicochemical variables, polyaromatic hydrocarbons or sewage discharge affect the probability of occurrence of the larval cestode Oncomegas wageneri, which infects the shoal flounder, Syacium gunteri, in the southern Gulf of Mexico.

Methods

The study area included 162 sampling sites in the southern Gulf of Mexico and covered 288,205 km², where the benthic sediments, water and the shoal flounder individuals were collected. We used the boosted generalised additive models (boosted GAM) and the MaxEnt to examine the potential statistical relationships between the environmental variables (nutrients, contaminants and physicochemical variables from the water and sediments) and the probability of the occurrence of this parasite. The models were calibrated using all of the sampling sites (full area) with and without parasite occurrences (n = 162) and a polygon area that included sampling sites with a depth of 1500 m or less (n = 134).

Results

Oncomegas wageneri occurred at 29/162 sampling sites. The boosted GAM for the full area and the polygon area accurately predicted the probability of the occurrence of O. wageneri in the study area. By contrast, poor probabilities of occurrence were obtained with the MaxEnt models for the same areas. The variables with the highest frequencies of appearance in the models (proxies for the explained variability) were the polyaromatic hydrocarbons of high molecular weight (PAHH, 95 %), followed by a combination of nutrients, spatial variables and polyaromatic hydrocarbons of low molecular weight (PAHL, 5 %).

Conclusions

The contribution of the PAHH to the variability was explained by the fact that these compounds, together with N and P, are carried by rivers that discharge into the ocean, which enhances the growth of hydrocarbonoclastic bacteria and the productivity and number of the intermediate hosts. Our results suggest that sites with PAHL/PAHH ratio values up to 1.89 promote transmission based on the high values of the prevalence of O. wageneri in the study area. In contrast, PAHL/PAHH ratio values ≥ 1.90 can be considered harmful for the transmission stages of O. wageneri and its hosts (copepods, shrimps and shoal flounders). Overall, the results indicate that the PAHHs affect the probability of occurrence of this helminth parasite in the southern Gulf of Mexico.

Electronic supplementary material

The online version of this article (doi:10.1186/s13071-015-1222-6) contains supplementary material, which is available to authorized users.

Is there a possibility of ranking benthic quality assessment indices to select the most responsive to different human pressures?

Although a plethora of benthic indices exist, there is no agreement on what index or indices should be used by environmental managers to establish benthic quality. The objective of this investigation was to rank 35 benthic quality assessment indices used in different countries to evaluate the impact produced by 15 different human pressures (including multipressure, aquaculture, sewage discharges, eutrophication, physical alteration, chemical pollution, climate change, etc.). The ranking was determined by taking into account the coverage area of biogeographical provinces, number of citations testing a pressure and number of citations with significant correlation with pressure. We analysed 363 references, of which 169 showed quantitative data. Over a potential total score of 100, the highest values were obtained by the following indices: (i) AZTI's Marine Biotic Index (AMBI), which scored 77, tested by using 14 pressures in 14 provinces from the Arctic to tropical seas; (ii) multivariate AMBI (M-AMBI), which scored 74, tested with 12 pressures in 13 provinces; (iii) Bentix (BENTIX), which scored 68, tested with nine pressures in six provinces; (iv) Benthic Quality Index (BQI), which scored 66, tested with five pressures in seven provinces; and (v) Benthic Opportunistic Polychaetes Amphipods (BOPA) index, which scored 62, tested with eight pressures in six provinces.

Macrobenthic assemblages, sediment characteristics and heavy metal concentrations in soft-bottom Ebre Delta bays (NW Mediterranean)

The spatial distribution of soft-bottom macrofaunal assemblages and their relationship with sediment characteristics were examined in two semi-enclosed shallow-water bays (Alfacs Bay and Fangar Bay) in the Ebre Delta (Catalonia, NW Mediterranean) during 2006 and 2011. Three assemblages were identified: group 1, present in sediments that contain a high percentage of silt-clay, small median particle size and high organic matter content and located at the most external areas of both bays and in the central basin of Alfacs Bay; group 2, present in the shallow northern platform in Alfacs Bay and in both platforms in Fangar Bay, the locations which feature highly variable sediment characteristics; and group 3, present in the shallow areas of both bays, which are characterised by low silt-clay and organic matter content. In Alfacs Bay, the differentiation of these assemblages has persisted since 1987, independently of the increase in organic matter content and heavy metal concentrations and of the shift in macrofaunal composition that have occurred over the past 20 years, most likely the result of increased agricultural activity.

Impacts of pesticides in a Central California estuary

Recent and past studies have documented the prevalence of pyrethroid and organophosphate pesticides in urban and agricultural watersheds in California. While toxic concentrations of these pesticides have been found in freshwater systems, there has been little research into their impacts in marine receiving waters. Our study investigated pesticide impacts in the Santa Maria River estuary, which provides critical habitat to numerous aquatic, terrestrial, and avian species on the central California coast. Runoff from irrigated agriculture constitutes a significant portion of Santa Maria River flow during most of the year, and a number of studies have documented pesticide occurrence and biological impacts in this watershed. Our study extended into the Santa Maria watershed coastal zone and measured pesticide concentrations throughout the estuary, including the water column and sediments. Biological effects were measured at the organism and community levels. Results of this study suggest the Santa Maria River estuary is impacted by current-use pesticides. The majority of water samples were highly toxic to invertebrates (Ceriodaphnia dubia and Hyalella azteca), and chemistry evidence suggests toxicity was associated with the organophosphate pesticide chlorpyrifos, pyrethroid pesticides, or mixtures of both classes of pesticides. A high percentage of sediment samples were also toxic in this estuary, and sediment toxicity occurred when mixtures of chlorpyrifos and pyrethroid pesticides exceeded established toxicity thresholds. Based on a Relative Benthic Index, Santa Maria estuary stations where benthic macroinvertebrate communities were assessed were degraded. Impacts in the Santa Maria River estuary were likely due to the proximity of this system to Orcutt Creek, the tributary which accounts for most of the flow to the lower Santa Maria River. Water and sediment samples from Orcutt Creek were highly toxic to invertebrates due to mixtures of the same pesticides measured in the estuary. This study suggests that the same pyrethroid and organophosphate pesticides that have been shown to cause water and sediment toxicity in urban and agriculture water bodies throughout California, have the potential to affect estuarine habitats. The results establish baseline data in the Santa Maria River estuary to allow evaluation of ecosystem improvement as management initiatives to reduce pesticide runoff are implemented in this watershed.

Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA

The spatial and temporal distribution of macrobenthic assemblages in the San Francisco Estuary and Sacramento-San Joaquin River Delta were identified using hierarchical cluster analysis of 501 samples collected between 1994 and 2008. Five benthic assemblages were identified that were distributed primarily along the salinity gradient: (1) a polyhaline assemblage that inhabits the Central Bay, (2) a mesohaline assemblage that inhabits South Bay and San Pablo Bay, (3) a low-diversity oligohaline assemblage primarily in Suisun Bay, (4) a low-diversity sand assemblage that occurs at various locations throughout the Estuary, and (5) a tidal freshwater assemblage in the Delta. Most sites were classified within the same assemblage in different seasons and years, but a few sites switched assemblage designations in response to seasonal changes in salinity from freshwater inflows.

Habitat-related benthic macrofaunal assemblages of bays and estuaries of the western United States

Data from 7 coastwide and regional benthic surveys were combined and used to assess the number and distribution of estuarine benthic macrofaunal assemblages of the western United States. Q-mode cluster analysis was applied to 714 samples and site groupings were tested for differences in 4 habitat factors (latitude, salinity, sediment grain size, and depth). Eight macrofaunal assemblages, structured primarily by latitude, salinity, and sediment grain size, were identified: (A) Puget Sound fine sediment, (B) Puget Sound coarse sediment, (C) southern California marine bays, (D) polyhaline central San Francisco Bay, (E) shallow estuaries and wetlands, (F) saline very coarse sediment, (G) mesohaline San Francisco Bay, and (H) limnetic and oligohaline. The Puget Sound, southern California, and San Francisco Bay assemblages were geographically distinct, while Assemblages E, F and H were distributed widely along the entire coast. A second Q-mode cluster analysis was conducted after adding replicate samples that were available from some of the sites and temporal replicates that were available for sites that were sampled in successive years. Variabilities due to small spatial scale habitat heterogeneity and temporal change were both low in Puget Sound, but temporal variability was high in the San Francisco estuary where large fluctuations in freshwater inputs and salinity among years leads to spatial relocation of the assemblages.

Development and evaluation of sediment quality guidelines based on benthic macrofauna responses

Toxicity-based sediment quality guidelines (SQGs) are often used to assess the potential of sediment contamination to adversely affect benthic macrofauna, yet the correspondence of these guidelines to benthic community condition is poorly documented. This study compares the performance of 5 toxicity-based SQG approaches to a new benthos-based SQG approach relative to changes in benthic community condition. Four of the toxicity-based SQG approaches--effects range median, logistic regression modeling (LRM), sediment quality guideline quotient 1 (SQGQ1), and consensus--were derived in previous national studies in the United States, and one was developed as a regional variation of LRM calibrated to California data. The new benthos-based SQG approach, chemical score index, was derived from Southern California benthic community data. The chemical-specific guidelines for each approach were applied to matched chemical concentration, amphipod mortality, and benthic macrofauna abundance data for Southern California. Respective results for each SQG approach were then combined into a summary metric describing the overall contamination magnitude (e.g., mean quotient) and assessed in accordance with a set of thresholds in order to classify stations into 4 categories of expected biological effect. Results for each SQG approach were significantly correlated with changes in sediment toxicity and benthic community condition. Cumulative frequency plots and effect category thresholds for toxicity and benthic community condition were similar, indicating that both types of effect measures had similar sensitivity and specificity of response to contamination level. In terms of discriminating among multiple levels of benthic community condition, the toxicity-based SQG indices illustrated moderate capabilities, similar to those for multiple levels of toxicity. The National LRM, California LRM, and the chemical score index had the highest overall agreement with benthic categories. However, only the benthos-based chemical score index was consistently among the highest performing SQG indices for all measures of association (correlation, percent agreement, and weighted kappa) for both toxicity and benthos.

Effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries

Benthic macrofauna are used extensively for environmental assessment, but the area sampled and sieve sizes used to capture animals often differ among studies. Here, we sampled 80 sites using 3 different sized sampling areas (0.1, 0.05, 0.0071 m(2)) and sieved those sediments through each of 2 screen sizes (0.5, 1 mm) to evaluate their effect on number of individuals, number of species, dominance, nonmetric multidimensional scaling (MDS) ordination, and benthic community condition indices that are used to assess sediment quality in California. Sample area had little effect on abundance but substantially affected numbers of species, which are not easily scaled to a standard area. Sieve size had a substantial effect on both measures, with the 1-mm screen capturing only 74% of the species and 68% of the individuals collected in the 0.5-mm screen. These differences, though, had little effect on the ability to differentiate samples along gradients in ordination space. Benthic indices generally ranked sample condition in the same order regardless of gear, although the absolute scoring of condition was affected by gear type. The largest differences in condition assessment were observed for the 0.0071-m(2) gear. Benthic indices based on numbers of species were more affected than those based on relative abundance, primarily because we were unable to scale species number to a common area as we did for abundance.

Assessing coastal benthic macrofauna community condition using best professional judgement--developing consensus across North America and Europe

Benthic indices are typically developed independently by habitat, making their incorporation into large geographic scale assessments potentially problematic because of scaling inequities. A potential solution is to establish common scaling using expert best professional judgment (BPJ). To test if experts from different geographies agree on condition assessment, sixteen experts from four regions in USA and Europe were provided species-abundance data for twelve sites per region. They ranked samples from best to worst condition and classified samples into four condition (quality) categories. Site rankings were highly correlated among experts, regardless of whether they were assessing samples from their home region. There was also good agreement on condition category, though agreement was better for samples at extremes of the disturbance gradient. The absence of regional bias suggests that expert judgment is a viable means for establishing a uniform scale to calibrate indices consistently across geographic regions.

Assessing ecological integrity in marine waters, using multiple indices and ecosystem components: challenges for the future

During the last decade, there have been substantial scientific advances in the development of indices that measure the condition of biological ecosystem elements in coastal and estuarine waters. Though successful, these advances were only the initial steps and a special session on use of indices in ecological integrity assessments was held at the Coastal and Estuarine Research Federation meeting to focus the field on the most appropriate directions for the next decade. The session identified four primary scientific challenges: (i) reduce the array of indices by identifying the index approaches that are most widely successful; (ii) establish minimum criteria for index validation; (iii) intercalibrate methods to achieve uniform assessment scales across geographies and habitats; and (iv) integrate indices across ecosystem elements. Where an explosion of indices characterized the last decade, the next decade needs to be characterized by consolidation. With increased knowledge and understanding about the strengths and weaknesses of competing index approaches, the field needs to unify approaches that provide managers with the simple answers they need to use ecological condition information effectively and efficiently.