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Cant A, Bado-Nilles A, Porcher JM, Bolzan D, Prygiel J, Catteau A, Turiès C, Geffard A, Bonnard M. Application of the Fpg-modified comet assay on three-spined stickleback in freshwater biomonitoring: toward a multi-biomarker approach of genotoxicity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-30756-6. [PMID: 37989949 DOI: 10.1007/s11356-023-30756-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Accepted: 10/25/2023] [Indexed: 11/23/2023]
Abstract
Aquatic species are exposed to a wide spectrum of substances, which can compromise their genomic integrity by inducing DNA damage or oxidative stress. Genotoxicity biomarkers as DNA strand breaks and chromosomal damages developed on sentinel species have already proved to be relevant in aquatic biomonitoring. However, these biomarkers do not reflect DNA oxidative lesions, i.e., the 8-oxodG, recognized as pre-mutagenic lesion if not or mis-repaired in human biomonitoring. The relevance to include the measure of these lesions by using the Fpg-modified comet assay on erythrocytes of the three-spined stickleback was investigated. An optimization step of the Fpg-modified comet assay considering enzyme buffer impact, Fpg concentration, and incubation time has been performed. Then, this measure was integrated in a battery of genotoxicity and cytotoxicity biomarkers (considering DNA strand breaks, DNA content variation, and cell apoptosis/necrosis and density) and applied in a freshwater monitoring program on six stations of the Artois Picardie watershed (3-week caging of control fish). These biomarkers allowed to discriminate the stations regarding the genotoxic potential of water bodies and specifically by the measure of oxidative DNA lesions, which seem to be a promising tool in environmental genotoxicity risk assessment.
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Affiliation(s)
- Amélie Cant
- Institut National de L'Environnement Industriel Et Des Risques (INERIS), UMR-I 02 SEBIO, Parc Technologique Alata, BP 2, 60550, Verneuil-en-Halatte, France
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, Moulin de La Housse, B.P. 1039, 51687, Reims, France
| | - Anne Bado-Nilles
- Institut National de L'Environnement Industriel Et Des Risques (INERIS), UMR-I 02 SEBIO, Parc Technologique Alata, BP 2, 60550, Verneuil-en-Halatte, France
| | - Jean-Marc Porcher
- Institut National de L'Environnement Industriel Et Des Risques (INERIS), UMR-I 02 SEBIO, Parc Technologique Alata, BP 2, 60550, Verneuil-en-Halatte, France
| | - Dorothée Bolzan
- Agence de L'Eau Artois-Picardie, Centre Tertiaire de L'Arsenal, BP 80818, 59508, Douai Cedex, France
| | - Jean Prygiel
- Agence de L'Eau Artois-Picardie, Centre Tertiaire de L'Arsenal, BP 80818, 59508, Douai Cedex, France
| | - Audrey Catteau
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, Moulin de La Housse, B.P. 1039, 51687, Reims, France
| | - Cyril Turiès
- Institut National de L'Environnement Industriel Et Des Risques (INERIS), UMR-I 02 SEBIO, Parc Technologique Alata, BP 2, 60550, Verneuil-en-Halatte, France
| | - Alain Geffard
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, Moulin de La Housse, B.P. 1039, 51687, Reims, France
| | - Marc Bonnard
- Université de Reims Champagne-Ardenne (URCA), UMR-I 02 SEBIO, Moulin de La Housse, B.P. 1039, 51687, Reims, France.
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Topić Popović N, Čižmek L, Babić S, Strunjak-Perović I, Čož-Rakovac R. Fish liver damage related to the wastewater treatment plant effluents. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:48739-48768. [PMID: 36869954 PMCID: PMC9985104 DOI: 10.1007/s11356-023-26187-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Accepted: 02/24/2023] [Indexed: 04/16/2023]
Abstract
Wastewater treatment plants (WWTPs) continuously release a complex mixture of municipal, hospital, industrial, and runoff chemicals into the aquatic environment. These contaminants are both legacy contaminants and emerging-concern contaminants, affecting all tissues in a fish body, particularly the liver. The fish liver is the principal detoxifying organ and effects of consistent pollutant exposure can be evident on its cellular and tissue level. The objective of this paper is thus to provide an in-depth analysis of the WWTP contaminants' impact on the fish liver structure, physiology, and metabolism. The paper also gives an overview of the fish liver biotransformation enzymes, antioxidant enzymes, and non-enzymatic antioxidants, their role in metabolizing xenobiotic compounds and coping with oxidative damage. Emphasis has been placed on highlighting the vulnerability of fish to xenobiotic compounds, and on biomonitoring of exposed fish, generally involving observation of biomarkers in caged or native fish. Furthermore, the paper systematically assesses the most common contaminants with the potential to affect fish liver tissue.
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Affiliation(s)
- Natalija Topić Popović
- Laboratory for Aquaculture Biotechnology, Ruđer Bošković Institute, Bijenička 54, Zagreb, Croatia.
- Centre of Excellence for Marine Bioprospecting-BioProCro, Ruđer Bošković Institute, Zagreb, Croatia.
| | - Lara Čižmek
- Laboratory for Aquaculture Biotechnology, Ruđer Bošković Institute, Bijenička 54, Zagreb, Croatia
- Centre of Excellence for Marine Bioprospecting-BioProCro, Ruđer Bošković Institute, Zagreb, Croatia
| | - Sanja Babić
- Laboratory for Aquaculture Biotechnology, Ruđer Bošković Institute, Bijenička 54, Zagreb, Croatia
- Centre of Excellence for Marine Bioprospecting-BioProCro, Ruđer Bošković Institute, Zagreb, Croatia
| | - Ivančica Strunjak-Perović
- Laboratory for Aquaculture Biotechnology, Ruđer Bošković Institute, Bijenička 54, Zagreb, Croatia
- Centre of Excellence for Marine Bioprospecting-BioProCro, Ruđer Bošković Institute, Zagreb, Croatia
| | - Rozelindra Čož-Rakovac
- Laboratory for Aquaculture Biotechnology, Ruđer Bošković Institute, Bijenička 54, Zagreb, Croatia
- Centre of Excellence for Marine Bioprospecting-BioProCro, Ruđer Bošković Institute, Zagreb, Croatia
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Wang Y, Zhou G, Guan T, Wang Y, Xuan C, Ding T, Gao J. A network-based matrix factorization framework for ceRNA co-modules recognition of cancer genomic data. Brief Bioinform 2022; 23:6581436. [PMID: 35514181 DOI: 10.1093/bib/bbac154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 03/30/2022] [Accepted: 04/06/2022] [Indexed: 11/13/2022] Open
Abstract
With the development of high-throughput technologies, the accumulation of large amounts of multidimensional genomic data provides an excellent opportunity to study the multilevel biological regulatory relationships in cancer. Based on the hypothesis of competitive endogenous ribonucleic acid (RNA) (ceRNA) network, lncRNAs can eliminate the inhibition of microRNAs (miRNAs) on their target genes by binding to intracellular miRNA sites so as to improve the expression level of these target genes. However, previous studies on cancer expression mechanism are mostly based on individual or two-dimensional data, and lack of integration and analysis of various RNA-seq data, making it difficult to verify the complex biological relationships involved. To explore RNA expression patterns and potential molecular mechanisms of cancer, a network-regularized sparse orthogonal-regularized joint non-negative matrix factorization (NSOJNMF) algorithm is proposed, which combines the interaction relations among RNA-seq data in the way of network regularization and effectively prevents multicollinearity through sparse constraints and orthogonal regularization constraints to generate good modular sparse solutions. NSOJNMF algorithm is performed on the datasets of liver cancer and colon cancer, then ceRNA co-modules of them are recognized. The enrichment analysis of these modules shows that >90% of them are closely related to the occurrence and development of cancer. In addition, the ceRNA networks constructed by the ceRNA co-modules not only accurately mine the known correlations of the three RNA molecules but also further discover their potential biological associations, which may contribute to the exploration of the competitive relationships among multiple RNAs and the molecular mechanisms affecting tumor development.
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Affiliation(s)
- Yujie Wang
- School of Science, Jiangnan University, Wuxi 214122, China
| | - Gang Zhou
- School of Science, Jiangnan University, Wuxi 214122, China
| | - Tianhao Guan
- School of Science, Jiangnan University, Wuxi 214122, China
| | - Yan Wang
- School of Science, Jiangnan University, Wuxi 214122, China
| | - Chenxu Xuan
- School of Science, Jiangnan University, Wuxi 214122, China
| | - Tao Ding
- School of Mathematics Statistics and Physics, Newcastle University, Newcastle upon Tyne NE1 7RU, UK
| | - Jie Gao
- School of Science, Jiangnan University, Wuxi 214122, China
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Lerebours A, Murzina S, Song Y, Tollefsen KE, Benedetti M, Regoli F, Rotchell JM, Nahrgang J. Susceptibility of polar cod (Boreogadus saida) to a model carcinogen. MARINE ENVIRONMENTAL RESEARCH 2021; 170:105434. [PMID: 34333338 DOI: 10.1016/j.marenvres.2021.105434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Revised: 07/22/2021] [Accepted: 07/23/2021] [Indexed: 06/13/2023]
Abstract
Studies that aim to characterise the susceptibility of the ecologically relevant and non-model fish polar cod (Boreogadus saida) to model carcinogens are required. Polar cod were exposed under laboratory conditions for six months to control, 0.03 μg BaP/g fish/week and 0.3 μg BaP/g fish/week dietary benzo(a)pyrene (BaP), a reference carcinogen. The concentrations of the 3-OH-BaP bile metabolite and transcriptional responses of genes involved in DNA adduct recognition (xpc), helicase activity (xpd), DNA repair (xpf, rad51) and tumour suppression (tp53) were assessed after 0, 1, 3 and 6 months of exposure, alongside body condition indexes (gonadosomatic index, hepatosomatic index and condition factor). Micronuclei and nuclear abnormalities in blood and spleen, and liver histopathological endpoints were assessed at the end of the experiment. Fish grew steadily over the whole experiment and no mortality was recorded. The concentrations of 3-OH-BaP increased significantly after 1 month of exposure to the highest BaP concentration and after 6 months of exposure to all BaP concentrations showing the biotransformation of the mother compound. Nevertheless, no significant induction of gene transcripts involved in DNA damage repair or tumour suppression were observed at the selected sampling times. These results together with the absence of chromosomal damage in blood and spleen cells, the subtle increase in nuclear abnormalities observed in spleen cells and the low occurrence of foci of cellular alteration suggested that the exposure was below the threshold of observable effects. Taken together, the results showed that polar cod was not susceptible to carcinogenesis using the BaP exposure regime employed herein.
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Affiliation(s)
- Adélaïde Lerebours
- School of Biological Sciences, University of Portsmouth, Portsmouth, PO1 2DY, United Kingdom; UMR CNRS LIENSs, Littoral Environnement et Sociétés, Université de La Rochelle, La Rochelle, 17 000, France.
| | - Svetlana Murzina
- Institute of Biology of the Karelian Research Centre of the Russian Academy of Sciences (IB KarRC RAS), 185910, Petrozavodsk, Russia
| | - You Song
- Norwegian Institute for Water Research (NIVA), Section of Ecotoxicology and Risk Assessment, Gaustadalléen 21, N-0349, Oslo, Norway
| | - Knut Erik Tollefsen
- Norwegian Institute for Water Research (NIVA), Section of Ecotoxicology and Risk Assessment, Gaustadalléen 21, N-0349, Oslo, Norway
| | - Maura Benedetti
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, 60131, Italy
| | - Francesco Regoli
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, 60131, Italy
| | - Jeanette M Rotchell
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Hull, HU6 7RX, United Kingdom
| | - Jasmine Nahrgang
- Department of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and Economics UiT the Arctic University of Norway, 9037, Tromsø, Norway
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Baines C, Lerebours A, Thomas F, Fort J, Kreitsberg R, Gentes S, Meitern R, Saks L, Ujvari B, Giraudeau M, Sepp T. Linking pollution and cancer in aquatic environments: A review. ENVIRONMENT INTERNATIONAL 2021; 149:106391. [PMID: 33515955 DOI: 10.1016/j.envint.2021.106391] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 12/23/2020] [Accepted: 01/09/2021] [Indexed: 06/12/2023]
Abstract
Due to the interconnectedness of aquatic ecosystems through the highly effective marine and atmospheric transport routes, all aquatic ecosystems are potentially vulnerable to pollution. Whilst links between pollution and increased mortality of wild animals have now been firmly established, the next steps should be to focus on specific physiological pathways and pathologies that link pollution to wildlife health deterioration. One of the pollution-induced pathologies that should be at the centre of attention in ecological and evolutionary research is cancer, as anthropogenic contamination has resulted in a rapid increase of oncogenic substances in natural habitats. Whilst wildlife cancer research is an emerging research topic, systematic reviews of the many case studies published over the recent decades are scarce. This research direction would (1) provide a better understanding of the physiological mechanisms connecting anthropogenic pollution to oncogenic processes in non-model organisms (reducing the current bias towards human and lab-animal studies in cancer research), and (2) allow us to better predict the vulnerability of different wild populations to oncogenic contamination. This article combines the information available within the scientific literature about cancer occurrences in aquatic and semi-aquatic species. For the first aim, we use available knowledge from aquatic species to suggest physiological mechanisms that link pollution and cancer, including main metabolic detoxification pathways, oxidative damage effects, infections, and changes to the microbiome. For the second aim, we determine which types of aquatic animals are more vulnerable to pollution-induced cancer, which types of pollution are mainly associated with cancer in aquatic ecosystems, and which types of cancer pollution causes. We also discuss the role of migration in exposing aquatic and semi-aquatic animals to different oncogenic pollutants. Finally, we suggest novel research avenues, including experimental approaches, analysis of the effects of pollutant cocktails and long-term chronic exposure to lower levels of pollutants, and the use of already published databases of gene expression levels in animals from differently polluted habitats.
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Affiliation(s)
- Ciara Baines
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia.
| | - Adelaide Lerebours
- LIttoral, ENvironnement et Sociétés (LIENSs), UMR7266, CNRS Université de La Rochelle, 2 rue Olympe de Gouges, 17042 La Rochelle Cedex, France
| | - Frederic Thomas
- CREEC/CREES, 911 Avenue Agropolis, BP 6450134394 Montpellier Cedex 5, France; MIVEGEC, UMR IRD/CNRS/UM 5290, 911 Avenue Agropolis, BP 6450134394 Montpellier Cedex 5, France
| | - Jerome Fort
- LIttoral, ENvironnement et Sociétés (LIENSs), UMR7266, CNRS Université de La Rochelle, 2 rue Olympe de Gouges, 17042 La Rochelle Cedex, France
| | - Randel Kreitsberg
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Sophie Gentes
- LIttoral, ENvironnement et Sociétés (LIENSs), UMR7266, CNRS Université de La Rochelle, 2 rue Olympe de Gouges, 17042 La Rochelle Cedex, France
| | - Richard Meitern
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
| | - Lauri Saks
- Estonian Marine Institute, Universty of Tartu, Mäealuse 14, 12618 Tallinn, Harju County, Estonia
| | - Beata Ujvari
- School of Life and Environmental Sciences, Centre for Integrative Ecology, Deakin University, Waurn Ponds, VIC, Australia
| | - Mathieu Giraudeau
- LIttoral, ENvironnement et Sociétés (LIENSs), UMR7266, CNRS Université de La Rochelle, 2 rue Olympe de Gouges, 17042 La Rochelle Cedex, France; CREEC/CREES, 911 Avenue Agropolis, BP 6450134394 Montpellier Cedex 5, France; MIVEGEC, UMR IRD/CNRS/UM 5290, 911 Avenue Agropolis, BP 6450134394 Montpellier Cedex 5, France
| | - Tuul Sepp
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia
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