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Chew AAN, Yap YZ, Poquita-Du RC, Huang D, Todd PA. Potential drivers of pocilloporid coral extirpations in Singapore. MARINE POLLUTION BULLETIN 2025; 214:117791. [PMID: 40088638 DOI: 10.1016/j.marpolbul.2025.117791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Revised: 03/04/2025] [Accepted: 03/04/2025] [Indexed: 03/17/2025]
Abstract
The reason why four out of five historically recorded pocilloporid species in Singapore went extinct remains unclear. However, potential causes include urbanization-related stressors such as sedimentation and low light. In this study, we conducted two ex-situ experiments to examine the effects of light limitation and sediment load on the survival and health of two extirpated (Stylophora pistillata, and Seriatopora hystrix), one extant (Pocillopora acuta), and one regional (Pocillopora meandrina) pocilloporid species. All were able to photoacclimate to high sedimentation and low light conditions. However, P. acuta and Se. hystrix exhibited reduced growth under low light, and mortality was significantly higher under increased sedimentation, especially for St. pistillata. While our results indicate that sedimentation and low light characteristic in Singapore's urban reefs are unlikely to be the sole drivers of pocilloporid extirpations, these variables probably contributed to the overall stress burden, pushing already uncommon species into functional, and then actual, extinction.
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Affiliation(s)
- Annie Ann Nee Chew
- Experimental Marine Ecology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Yan Zhi Yap
- Experimental Marine Ecology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Rosa Celia Poquita-Du
- Senckenberg Biodiversity and Climate Research Center, Senckenberganlage 25, 60325 Frankfurt am Main, Germany
| | - Danwei Huang
- Lee Kong Chian Natural History Museum, National University of Singapore, 2 Conservatory Drive, Singapore 117377, Singapore; Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore
| | - Peter Alan Todd
- Experimental Marine Ecology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore; Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore.
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2
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Hobosyan NG, Balyan KV, Movsisyan LA, Hovsepyan VS, Sargsyan HB, Pogosyan HR, Harutyunyan HR, Manvelyan AA, Ghazaryan MH, Asatryan SS, Terlemezyan HL. Novel Synthetic Strategy and Field Testing Tomato Pinworm Pheromone in Armenia. Chem Biodivers 2025:e202403455. [PMID: 40035160 DOI: 10.1002/cbdv.202403455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2024] [Revised: 02/20/2025] [Accepted: 03/03/2025] [Indexed: 03/05/2025]
Abstract
Two synthon C10 + C3 strategy syntheses of tomato pinworm sex pheromone- (E)-, (Z)-tridec-4-en-1-yl acetates- were illustrated. The iodinated dec-1-yn was successfully applied as a substrate in the synthesis of sex pheromone. The C10-component-1-iododec-1-yne was first obtained by the electrophilic iodination of dec-1-yne in the presence of cadmium (II) acetate. Additionally, the C3 component was produced from 2-(3-bromopropoxy) tetrahydro-2H-pyran by the Grignard reaction. The most important stage was the coupling of C10 and C3 components, and condensation in tetrahydrofuran in the presence of dilithium tetrachlorocuprate was carried out due to the great reactivity of the 1-iododec-1-yne. The dispensers were made based on the target sex pheromone and located in the traps. The active preparative forms were tested in field conditions in some regions of Armenia in 2024. Based on the field studies Keiferia lycopersicella belonging to the family Gelechiidae was recorded in Armenia (Armavir, Ararat, Tavush, and Kotayk regions) for the first time.
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Affiliation(s)
- Nina G Hobosyan
- Department of Organic Chemistry, Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences of the Republic of Armenia, Yerevan, Republic of Armenia
- Department of Pharmaceutical Chemistry, Yerevan Haybusak University, Yerevan, Republic of Armenia
| | - Kristine V Balyan
- Department of Organic Chemistry, Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences of the Republic of Armenia, Yerevan, Republic of Armenia
- Department of Pharmaceutical Chemistry, International Scientific Educational Center of NASRA, Yerevan, Republic of Armenia
| | - Lusine A Movsisyan
- Department of Organic Chemistry, Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences of the Republic of Armenia, Yerevan, Republic of Armenia
| | - Varduhi S Hovsepyan
- Department of Organic Chemistry, Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences of the Republic of Armenia, Yerevan, Republic of Armenia
- Department of Biology and Chemistry and their Teaching Methodology, Armenian State Pedagogical University after Khachatur Abovyan, Yerevan, Republic of Armenia
| | - Hmayak B Sargsyan
- Department of Organic Chemistry, Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences of the Republic of Armenia, Yerevan, Republic of Armenia
| | - Haykanush R Pogosyan
- Department of Organic Chemistry, Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences of the Republic of Armenia, Yerevan, Republic of Armenia
| | - Harutyun R Harutyunyan
- Department of Plant Protection, Research Centre of Risk Assessment and Analysis in Food Safety Area, Ministry of Economy of the Republic of Armenia, Merdzavan, Republic of Armenia
| | - Armine A Manvelyan
- Department of Agronomy, Horticulture and Plant Protection, Armenian National Agrarian University, Yerevan, Republic of Armenia
| | - Margarit H Ghazaryan
- Department of Agronomy, Horticulture and Plant Protection, Armenian National Agrarian University, Yerevan, Republic of Armenia
| | - Samvel S Asatryan
- Department of Agronomy, Horticulture and Plant Protection, Armenian National Agrarian University, Yerevan, Republic of Armenia
- Department of Plant Breeding, Ministry of Economy of the Republic of Armenia, Yerevan, Republic of Armenia
| | - Hrant L Terlemezyan
- Department of Plant Protection, Research Centre of Risk Assessment and Analysis in Food Safety Area, Ministry of Economy of the Republic of Armenia, Merdzavan, Republic of Armenia
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Xie J, Feng X, Gao T, Wang Z, Wan K, Yin B. Application of deep learning in predicting suspended sediment concentration: A case study in Jiaozhou Bay, China. MARINE POLLUTION BULLETIN 2024; 201:116255. [PMID: 38513605 DOI: 10.1016/j.marpolbul.2024.116255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 03/05/2024] [Accepted: 03/09/2024] [Indexed: 03/23/2024]
Abstract
Previous research methodologies for quantifying Suspended Sediment Concentration (SSC) have encompassed in-situ observations, numerical simulations, and analyses of remote sensing datasets, each with inherent constraints. In this study, we have harnessed Convolutional Neural Networks (CNNs) to create a deep learning model, which has been applied to the remote sensing data procured from the Geostationary Ocean Color Imager (GOCI) spanning April 2011 to March 2021. Our research indicates that on a small time scale, wind and hydrodynamic forces both have a significant impact on the prediction results of CNNs model. Considering both wind and hydrodynamic forces can effectively improve the model's prediction efficiency for SSC. Moreover, we have employed CNNs to interpolate absent values within the remote sensing datasets, yielding enhancements superior to those attained via linear or multivariate regression techniques. Finally, the correlation coefficient between CNN-derived SSC estimates for Jiaozhou Bay (JZB) and its corresponding remote sensing data is 0.72. Correlation coefficient and root mean square error differ in different regions. In the shallow water of JZB, due to water level changes, there is limited data, and the correlation coefficient in this area is about 0.5-0.6. In the central region of JZB with sufficient data, the correlation coefficient is generally higher than 0.75. Therefore, we believe that this CNNs model can be used to predict the hourly variation of SSC. When juxtaposed with alternative methodologies, the CNN approach is found to economize computational resources and enhance processing efficiency.
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Affiliation(s)
- Jianbin Xie
- Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100029, China
| | - Xingru Feng
- Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Pilot National Laboratory for Marine Science and Technology, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100029, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China.
| | - Tianhai Gao
- Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100029, China
| | - Zhifeng Wang
- Ocean University of China, Qingdao 266071, China
| | - Kai Wan
- North China Sea Survey Center, MNR, Qingdao 266071, China
| | - Baoshu Yin
- Key Laboratory of Ocean Observation and Forecasting, Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Pilot National Laboratory for Marine Science and Technology, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 100029, China; CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
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Tebbett SB, Schlaefer JA, Bowden CL, Collins WP, Hemingson CR, Ling SD, Morais J, Morais RA, Siqueira AC, Streit RP, Swan S, Bellwood DR. Bio-physical determinants of sediment accumulation on an offshore coral reef: A snapshot study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 895:165188. [PMID: 37385494 DOI: 10.1016/j.scitotenv.2023.165188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 06/15/2023] [Accepted: 06/26/2023] [Indexed: 07/01/2023]
Abstract
Sediments are found on all coral reefs around the globe. However, the amount of sediment in different reservoirs, and the rates at which sediments move between reservoirs, can shape the biological functioning of coral reefs. Unfortunately, relatively few studies have examined reef sediment dynamics, and associated bio-physical drivers, simultaneously over matching spatial and temporal scales. This has led to a partial understanding of how sediments and living reef systems are connected, especially on clear-water offshore reefs. To address this problem, four sediment reservoirs/sedimentary processes and three bio-physical drivers were quantified across seven different reef habitats/depths at Lizard Island, an exposed mid-shelf reef on the Great Barrier Reef. Even in this clear-water reef location a substantial load of suspended sediment passed over the reef; a load theoretically capable of replacing the entire standing stock of on-reef turf sediments in just 8 h. However, quantification of actual sediment deposition suggested that just 2 % of this passing sediment settled on the reef. The data also revealed marked spatial incongruence in sediment deposition (sediment trap data) and accumulation (TurfPod data) across the reef profile, with the flat and back reef emerging as key areas of both deposition and accumulation. By contrast, the shallow windward reef crest was an area of deposition but had a limited capacity for sediment accumulation. These cross-reef patterns related to wave energy and reef geomorphology, with low sediment accumulation on the ecologically important reef crest aligning with substantial wave energy. These findings reveal a disconnect between patterns of sediment deposition and accumulation on the benthos, with the 'post-settlement' fate of sediments dependent on local hydrodynamic conditions. From an ecological perspective, the data suggests key contextual constraints (wave energy and reef geomorphology) may predispose some reefs or reef areas to high-load turf sediment regimes.
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Affiliation(s)
- Sterling B Tebbett
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia.
| | - Jodie A Schlaefer
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia; Commonwealth Scientific and Industrial Research Organisation (CSIRO), Environment, Townsville, Queensland, 4811, Australia
| | - Casey L Bowden
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - William P Collins
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Christopher R Hemingson
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia; Department of Marine Science, The University of Texas at Austin, Marine Science Institute, Port Aransas, TX, USA
| | - Scott D Ling
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart 7001, Australia
| | - Juliano Morais
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Renato A Morais
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia; Paris Sciences et Lettres Université, École Pratique des Hautes Études, EPHE-UPVD-CNRS, USR 3278 CRIOBE, University of Perpignan, Perpignan, France
| | - Alexandre C Siqueira
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Robert P Streit
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Sam Swan
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - David R Bellwood
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
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Ng MS, Todd PA. The comparative effects of chronic microplastic and sediment deposition on the scleractinian coral Merulina ampliata. MARINE ENVIRONMENTAL RESEARCH 2023; 191:106135. [PMID: 37598615 DOI: 10.1016/j.marenvres.2023.106135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 07/30/2023] [Accepted: 08/10/2023] [Indexed: 08/22/2023]
Abstract
Despite increasing research into the effects of microplastics on corals, no study to date has compared this relatively novel pollutant with a well-established stressor such as downwelling sediments. Here, Merulina ampliata coral fragments were exposed to polyethylene terephthalate (PET) and calcium carbonate particles (200-300 μm) at two deposition levels, high (115.20 ± 5.83 mg cm-2 d-1, mean ± SE) and low (22.87 ± 1.90 mg cm-2 d-1) in specially-designed Flow-Through Resuspension (FloTR) chambers. After 28 d, there were no significant differences between fragments exposed to sediments and microplastics for coral skeletal growth, Symbiodiniaceae density, and areal or cellular chlorophyll a concentrations. There were also no significant differences between levels of treatments, or with the control fragments. More PET microplastic particles were incorporated into the coral skeletons of fragments exposed to microplastics compared to those exposed to sediment and the control fragments, but there was no difference between fragments exposed to high and low microplastic levels. Together, the results show that M. ampliata appears to be able to cope with both microplastic and sediment stress, and suggests that microplastics do not represent a more serious threat than downwelling sediments at the levels tested.
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Affiliation(s)
- Ming Sheng Ng
- Experimental Marine Ecology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore, 117558, Singapore; Yale-NUS College, National University of Singapore, 16 College Avenue West, Singapore, 138527, Singapore.
| | - Peter A Todd
- Experimental Marine Ecology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore, 117558, Singapore.
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Schlaefer JA, Tebbett SB, Bowden CL, Collins WP, Duce S, Hemingson CR, Huertas V, Mihalitsis M, Morais J, Morais RA, Siqueira AC, Streit RP, Swan S, Valenzuela J, Bellwood DR. A snapshot of sediment dynamics on an inshore coral reef. MARINE ENVIRONMENTAL RESEARCH 2022; 181:105763. [PMID: 36206642 DOI: 10.1016/j.marenvres.2022.105763] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 09/25/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Sediments are ubiquitous on coral reefs. However, studies of reef sediments have largely focused on isolated reservoirs, or processes, and rarely consider hydrodynamic drivers. We therefore provide a quantitative snapshot of sediment dynamics on a coral reef. Across a depth profile, we simultaneously examined: suspended sediments, sediment deposition and accumulation, and hydrodynamic and biological movement processes. We reveal the marked potential for the water column to deliver sediments. Currents carried 12.6 t of sediment over the 2,314 m2 study area in 6 days. Sediment traps suggested that a surprisingly high percentage of this sediment was potentially deposited (5.2%). Furthermore, wave-driven resuspension and reworking by parrotfishes separated a highly dynamic sediment regime on the shallow reef flat (3 m), from a more stagnant reef slope (4.5 m-12 m). This study provides a comprehensive model of how hydrodynamic forces and on-reef processes may shape sediment dynamics on a coral reef.
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Affiliation(s)
- Jodie A Schlaefer
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia; Commonwealth Scientific and Industrial Research Organisation (CSIRO), Oceans and Atmosphere, Hobart, Tasmania, 7000, Australia
| | - Sterling B Tebbett
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Casey L Bowden
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - William P Collins
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Stephanie Duce
- College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Christopher R Hemingson
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Victor Huertas
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Michalis Mihalitsis
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Juliano Morais
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Renato A Morais
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Alexandre C Siqueira
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Robert P Streit
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Sam Swan
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Jessica Valenzuela
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - David R Bellwood
- Research Hub for Coral Reef Ecosystem Functions, James Cook University, Townsville, QLD, 4811, Australia; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.
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