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Jigisha J, Ly J, Minadakis N, Freund F, Kunz L, Piechota U, Akin B, Balmas V, Ben-David R, Bencze S, Bourras S, Bozzoli M, Cotuna O, Couleaud G, Cséplő M, Czembor P, Desiderio F, Dörnte J, Dreiseitl A, Feechan A, Gadaleta A, Gauthier K, Giancaspro A, Giove SL, Handley-Cornillet A, Hubbard A, Karaoglanidis G, Kildea S, Koc E, Liatukas Ž, Lopes MS, Mascher F, McCabe C, Miedaner T, Martínez-Moreno F, Nellist CF, Okoń S, Praz C, Sánchez-Martín J, Sărăţeanu V, Schulz P, Schwartz N, Seghetta D, Martel IS, Švarta A, Testempasis S, Villegas D, Widrig V, Menardo F. Population genomics and molecular epidemiology of wheat powdery mildew in Europe. PLoS Biol 2025; 23:e3003097. [PMID: 40315179 PMCID: PMC12047814 DOI: 10.1371/journal.pbio.3003097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Accepted: 03/04/2025] [Indexed: 05/04/2025] Open
Abstract
Agricultural diseases are a major threat to sustainable food production. Yet, for many pathogens we know exceptionally little about their epidemiological and population dynamics, and this knowledge gap is slowing the development of efficient control strategies. Here we study the population genomics and molecular epidemiology of wheat powdery mildew, a disease caused by the biotrophic fungus Blumeria graminis forma specialis tritici (Bgt). We sampled Bgt across two consecutive years, 2022 and 2023, and compiled a genomic dataset of 415 Bgt isolates from 22 countries in Europe and surrounding regions. We identified a single epidemic unit in the north of Europe, consisting of a highly homogeneous population. Conversely, the south of Europe hosts smaller local populations which are less interconnected. In addition, we show that the population structure can be largely predicted by the prevalent wind patterns. We identified several loci that were under selection in the recent past, including fungicide targets and avirulence genes. Some of these loci are common between populations, while others are not, suggesting different local selective pressures. We reconstructed the evolutionary history of one of these loci, AvrPm17, coding for an effector recognized by the wheat receptor Pm17. We found evidence for a soft sweep on standing genetic variation. Multiple AvrPm17 haplotypes, which can partially escape recognition by Pm17, spread rapidly throughout the continent upon its introduction in the early 2000s. We also identified a new virulent variant, which emerged more recently and can evade Pm17 resistance altogether. Overall, we highlight the potential of genomic surveillance in resolving the evolutionary and epidemiological dynamics of agricultural pathogens, as well as in guiding control strategies.
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Affiliation(s)
- Jigisha Jigisha
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
| | - Jeanine Ly
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
| | - Nikolaos Minadakis
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
| | - Fabian Freund
- Department of Genetics, Genomics and Cancer Science, University of Leicester, Leicester, United Kingdom
| | - Lukas Kunz
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
| | - Urszula Piechota
- Plant Breeding and Acclimatization Institute - National Research Institute, Radzików, Poland
| | | | - Virgilio Balmas
- Department of Agricultural Sciences, University of Sassari, Sassari, Italy
| | - Roi Ben-David
- Department of Vegetable and Field Crops, Institute of Plant Sciences, Agricultural Research Organization–Volcani Institute, Rishon LeZion, Israel
| | - Szilvia Bencze
- Hungarian Research Institute of Organic Agriculture, Budapest, Hungary
| | - Salim Bourras
- Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Matteo Bozzoli
- Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy
| | - Otilia Cotuna
- Agriculture Faculty, University of Life Sciences “King Mihai I” from Timișoara, Timișoara, Romania
| | - Gilles Couleaud
- Arvalis Institut du végétal, Station Expérimentale, Boigneville, France
| | - Mónika Cséplő
- Agricultural Institute, HUN-REN Centre for Agricultural Research, Martonvásár, Hungary
| | - Paweł Czembor
- Plant Breeding and Acclimatization Institute - National Research Institute, Radzików, Poland
| | - Francesca Desiderio
- Council for Agricultural Research and Economics, Research Centre for Genomics and Bioinformatics, Fiorenzuola d’Arda, Italy
| | - Jost Dörnte
- Deutsche Saatveredelung AG, Leutewitz, Germany
| | - Antonín Dreiseitl
- Department of Integrated Plant Protection, Agrotest Fyto Ltd., Kroměříž, Czech Republic
| | - Angela Feechan
- School of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland
- Institute for Life and Earth Sciences, School of Energy, Geosciences, Infrastructure and Society, Heriot-Watt University, Edinburgh, United Kingdom
| | - Agata Gadaleta
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Kevin Gauthier
- Agroscope, Department of Plant Breeding, Nyon, Switzerland
| | - Angelica Giancaspro
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | - Stefania L. Giove
- Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy
| | | | | | - George Karaoglanidis
- Department of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | | | | | - Žilvinas Liatukas
- Institute of Agriculture, Lithuanian Research Centre for Agriculture and Forestry, Akademija, Lithuania
| | | | - Fabio Mascher
- Haute école des sciences agronomiques, forestières et alimentaires, Bern, Switzerland
| | - Cathal McCabe
- School of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland
| | - Thomas Miedaner
- State Plant Breeding Institute, University of Hohenheim, Stuttgart, Germany
| | | | | | - Sylwia Okoń
- Institute of Genetics, Breeding and Biotechnology of Plants, University of Life Sciences in Lublin, Lublin, Poland
| | - Coraline Praz
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid, Madrid, Spain
| | - Javier Sánchez-Martín
- Department of Microbiology and Genetics, Spanish-Portuguese Institute for Agricultural Research, University of Salamanca, Salamanca, Spain
| | - Veronica Sărăţeanu
- Agriculture Faculty, University of Life Sciences “King Mihai I” from Timișoara, Timișoara, Romania
| | - Philipp Schulz
- Institut für Pflanzenschutz in Ackerbau und Grünland, Julius Kühn-Institut, Bundesforschungsinstitut für Kulturpflanzen, Braunschweig, Germany
| | - Nathalie Schwartz
- Arvalis Institut du végétal, Station Expérimentale, Boigneville, France
| | - Daniele Seghetta
- Centro Ricerche e Sperimentazione per il Miglioramento Vegetale “N. Strampelli”, Macerata, Italy
| | | | - Agrita Švarta
- Latvia University of Life sciences and technologies, Jelgava, Latvia
| | - Stefanos Testempasis
- Department of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Dolors Villegas
- Sustainable Field Crops, IRTA, Lleida, Spain
- Estacion Experimental de Aula Dei, CSIC, Zaragoza, Spain
| | - Victoria Widrig
- Department of Microbiology and Genetics, Spanish-Portuguese Institute for Agricultural Research, University of Salamanca, Salamanca, Spain
| | - Fabrizio Menardo
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
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Abdullah NH, Elbialy NA, Amer MA, Gabr MK, Youssef ASED, Sharaf MH, Shehata ME, Kalaba MH, Soliman ERS. Iron/Copper/Phosphate nanocomposite as antimicrobial, antisnail, and wheat growth-promoting agent. BMC Biotechnol 2024; 24:11. [PMID: 38443850 PMCID: PMC10916069 DOI: 10.1186/s12896-024-00836-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Accepted: 02/14/2024] [Indexed: 03/07/2024] Open
Abstract
BACKGROUND One of the current challenges is to secure wheat crop production to meet the increasing global food demand and to face the increase in its purchasing power. Therefore, the current study aimed to exploit a new synthesized nanocomposite to enhance wheat growth under both normal and drought regime. The effectiveness of this nanocomposite in improving the microbiological quality of irrigation water and inhibiting the snail's growth was also assessed. RESULTS Upon the employed one-step synthesis process, a spherical Fe/Cu/P nanocomposite was obtained with a mean particle size of 4.35 ± 1.524 nm. Cu2+, Fe2+, and P4+ were detected in the dried nanocomposite at 14.533 ± 0.176, 5.200 ± 0.208, and 34.167 ± 0.203 mg/ml concentration, respectively. This nanocomposite was found to exert antibacterial activity against Escherichia coli and Salmonella typhi. It caused good inhibition percent against Fusarium oxysporum (43.5 ± 1.47%) and reduced both its germination rate and germination efficiency. The lethal concentration 50 (LC50) of this nanocomposite against Lanistes carinatus snails was 76 ppm. The treated snails showed disturbance in their feeding habit and reached the prevention state. Significant histological changes were observed in snail digestive tract and male and female gonads. Drought stress on wheat's growth was mitigated in response to 100 and 300 ppm treatments. An increase in all assessed growth parameters was reported, mainly in the case of 100 ppm treatment under both standard and drought regimes. Compared to control plants, this stimulative effect was accompanied by a 2.12-fold rise in mitotic index and a 3.2-fold increase in total chromosomal abnormalities. CONCLUSION The finding of the current study could be employed to mitigate the effect of drought stress on wheat growth and to enhance the microbiological quality of irrigation water. This is due to the increased efficacy of the newly synthesized Fe/Cu/P nanocomposite against bacteria, fungi, and snails. This methodology exhibits potential for promoting sustainable wheat growth and water resource conservation.
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Affiliation(s)
- Nashwa H Abdullah
- Botany and Microbiology Department, Faculty of Science, Helwan University, Cairo, Egypt.
| | - Nouran A Elbialy
- Biotechnology and Biomolecular Chemistry Department, Faculty of Science, Cairo University, Giza, Egypt
| | | | - Mostafa Kh Gabr
- Zoology Department, Faculty of Science, Al-Azhar University, Cairo, Egypt
| | - Amira Salah El-Din Youssef
- Virology and Immunology Unit, Cancer Biology Department, National Cancer Institute, Cairo University, Giza, Egypt
| | - Mohamed H Sharaf
- Botany and Microbiology Department, Faculty of Science, Al-Azhar University, Cairo, Egypt
| | - M E Shehata
- Botany and Microbiology Department, Faculty of Science, Al-Azhar University, Cairo, Egypt
| | - Mohamed H Kalaba
- Botany and Microbiology Department, Faculty of Science, Al-Azhar University, Cairo, Egypt.
| | - Elham R S Soliman
- Botany and Microbiology Department, Faculty of Science, Helwan University, Cairo, Egypt
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