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For: Zinger L, Gury J, Alibeu O, Rioux D, Gielly L, Sage L, Pompanon F, Geremia RA. CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies. J Microbiol Methods 2007;72:42-53. [PMID: 18054096 DOI: 10.1016/j.mimet.2007.10.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2007] [Revised: 10/12/2007] [Accepted: 10/12/2007] [Indexed: 11/18/2022]
Number Cited by Other Article(s)
1
Skuza L, Filip E, Szućko I, Bocianowski J. SPInDel Analysis of the Non-Coding Regions of cpDNA as a More Useful Tool for the Identification of Rye (Poaceae: Secale) Species. Int J Mol Sci 2020;21:ijms21249421. [PMID: 33321948 PMCID: PMC7762986 DOI: 10.3390/ijms21249421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2020] [Revised: 12/07/2020] [Accepted: 12/08/2020] [Indexed: 01/09/2023]  Open
2
Mishra VK, Passari AK, Leo VV, Singh BP. Molecular Diversity and Detection of Endophytic Fungi Based on Their Antimicrobial Biosynthetic Genes. Fungal Biol 2017. [DOI: 10.1007/978-3-319-34106-4_1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
3
Řeháková K, Chroňáková A, Krištůfek V, Kuchtová B, Čapková K, Scharfen J, Čapek P, Doležal J. Bacterial community of cushion plant Thylacospermum ceaspitosum on elevational gradient in the Himalayan cold desert. Front Microbiol 2015;6:304. [PMID: 25932023 PMCID: PMC4399334 DOI: 10.3389/fmicb.2015.00304] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 03/27/2015] [Indexed: 11/16/2022]  Open
4
Thébault A, Clément JC, Ibanez S, Roy J, Geremia RA, Pérez CA, Buttler A, Estienne Y, Lavorel S. Nitrogen limitation and microbial diversity at the treeline. OIKOS 2014. [DOI: 10.1111/j.1600-0706.2013.00860.x] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
5
Jabbar A, Gasser RB. Mutation scanning analysis of genetic variation within and among Echinococcus species: implications and future prospects. Electrophoresis 2014;34:1852-62. [PMID: 23977679 DOI: 10.1002/elps.201300078] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
6
Roy J, Albert CH, Ibanez S, Saccone P, Zinger L, Choler P, Clément JC, Lavergne S, Geremia RA. Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities. Front Microbiol 2013;4:64. [PMID: 23543612 PMCID: PMC3608923 DOI: 10.3389/fmicb.2013.00064] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Accepted: 03/05/2013] [Indexed: 11/29/2022]  Open
7
Cordier T, Robin C, Capdevielle X, Desprez-Loustau ML, Vacher C. Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). FUNGAL ECOL 2012. [DOI: 10.1016/j.funeco.2011.12.004] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
8
Carneiro J, Pereira F, Amorim A. SPI n D el: a multifunctional workbench for species identification using insertion/deletion variants. Mol Ecol Resour 2012;12:1190-5. [DOI: 10.1111/1755-0998.12011] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2012] [Revised: 08/03/2012] [Accepted: 08/07/2012] [Indexed: 12/01/2022]
9
Badin AL, Mustafa T, Bertrand C, Monier A, Delolme C, Geremia RA, Bedell JP. Microbial communities of urban stormwater sediments: the phylogenetic structure of bacterial communities varies with porosity. FEMS Microbiol Ecol 2012;81:324-38. [DOI: 10.1111/j.1574-6941.2012.01354.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2012] [Revised: 02/24/2012] [Accepted: 02/24/2012] [Indexed: 11/29/2022]  Open
10
Krüger D, Kapturska D, Fischer C, Daniel R, Wubet T. Diversity measures in environmental sequences are highly dependent on alignment quality--data from ITS and new LSU primers targeting basidiomycetes. PLoS One 2012;7:e32139. [PMID: 22363808 PMCID: PMC3283731 DOI: 10.1371/journal.pone.0032139] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2011] [Accepted: 01/23/2012] [Indexed: 02/04/2023]  Open
11
Garland S, James TY, Blair D, Berger L, Skerratt LF. Polymorphic repetitive loci of the amphibian pathogen Batrachochytrium dendrobatidis. DISEASES OF AQUATIC ORGANISMS 2011;97:1-9. [PMID: 22235589 DOI: 10.3354/dao02396] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
12
Gulija TK, Ivancic-Jelecki J, Šantak M, Forcic D. Comparative analysis of CE-SSCP to standard RFLP-CE-FLA method in quantification of known viral variants within an RNA virus quasispecies. Electrophoresis 2011;32:1852-9. [DOI: 10.1002/elps.201100010] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
13
Zinger L, Lejon DPH, Baptist F, Bouasria A, Aubert S, Geremia RA, Choler P. Contrasting diversity patterns of crenarchaeal, bacterial and fungal soil communities in an alpine landscape. PLoS One 2011;6:e19950. [PMID: 21589876 PMCID: PMC3093402 DOI: 10.1371/journal.pone.0019950] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2011] [Accepted: 04/07/2011] [Indexed: 12/02/2022]  Open
14
Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing. FUNGAL DIVERS 2011. [DOI: 10.1007/s13225-011-0101-5] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
15
Badin AL, Monier A, Volatier L, Geremia RA, Delolme C, Bedell JP. Structural stability, microbial biomass and community composition of sediments affected by the hydric dynamics of an urban stormwater infiltration basin. Dynamics of physical and microbial characteristics of stormwater sediment. MICROBIAL ECOLOGY 2011;61:885-897. [PMID: 21431934 DOI: 10.1007/s00248-011-9829-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2010] [Accepted: 02/09/2011] [Indexed: 05/30/2023]
16
Diversity of Fungal Endophytes in Tropical Trees. ENDOPHYTES OF FOREST TREES 2011. [DOI: 10.1007/978-94-007-1599-8_4] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
17
Michelland RJ, Monteils V, Combes S, Cauquil L, Gidenne T, Fortun-Lamothe L. Comparison of the archaeal community in the fermentative compartment and faeces of the cow and the rabbit. Anaerobe 2010;16:396-401. [PMID: 20417714 DOI: 10.1016/j.anaerobe.2010.04.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2009] [Revised: 03/18/2010] [Accepted: 04/15/2010] [Indexed: 12/01/2022]
18
Pegard A, Miquel C, Valentini A, Coissac E, Bouvier F, François D, Taberlet P, Engel E, Pompanon F. Universal DNA-based methods for assessing the diet of grazing livestock and wildlife from feces. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2009;57:5700-5706. [PMID: 19566081 DOI: 10.1021/jf803680c] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
19
Microbial diversity in alpine tundra soils correlates with snow cover dynamics. ISME JOURNAL 2009;3:850-9. [PMID: 19322246 DOI: 10.1038/ismej.2009.20] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
20
Valentini A, Pompanon F, Taberlet P. DNA barcoding for ecologists. Trends Ecol Evol 2008;24:110-7. [PMID: 19100655 DOI: 10.1016/j.tree.2008.09.011] [Citation(s) in RCA: 527] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2007] [Revised: 08/26/2008] [Accepted: 09/08/2008] [Indexed: 12/14/2022]
21
Baptist F, Zinger L, Clement JC, Gallet C, Guillemin R, Martins JMF, Sage L, Shahnavaz B, Choler P, Geremia R. Tannin impacts on microbial diversity and the functioning of alpine soils: a multidisciplinary approach. Environ Microbiol 2008;10:799-809. [DOI: 10.1111/j.1462-2920.2007.01504.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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