1
|
Veyna-Hurtado LA, Hernández-López H, Reyes-Escobedo FDR, de Loera D, García-Cruz S, Troncoso-Vázquez L, Galván-Valencia M, Castañeda-Delgado JE, Cervantes-Villagrana AR. The Derivative Difluoroboranyl-Fluoroquinolone "7a" Generates Effective Inhibition Against the S. aureus Strain in a Murine Model of Acute Pneumonia. Curr Issues Mol Biol 2025; 47:110. [PMID: 39996831 PMCID: PMC11854692 DOI: 10.3390/cimb47020110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 01/28/2025] [Accepted: 02/06/2025] [Indexed: 02/26/2025] Open
Abstract
During the last decades, most bacterial strains have become increasingly resistant to antibiotics. This led the WHO to declare a global emergency in 2017 and urge the development of new active compounds. Some families of antibiotics still show high antibacterial efficacy, as is the case of fluoroquinolones, which have a broad spectrum of action. For this reason, our research group derived several compounds from fluoroquinolones, selecting a compound with good antibacterial activity for further evaluations, a difluoroboranil-fluoroquinolone complex labeled 7a. Antibacterial activity was evaluated using the Kirby-Bauer method against S. aureus (clinical isolate HGZ2201#ID). The MIC and MBC were obtained by macrodilutions and reseeding. In vivo antimicrobial activity was evaluated in a Balb/c mouse model infected intratracheally with S. aureus and subsequently treated with ciprofloxacin or 7a (80 mg/kg/day) for five days. A mean of 8.55 ± 0.395 cm2 inhibition area was observed using 7a, while ciprofloxacin generated a mean inhibition of 7.86 ± 0.231 cm2. Compound 7a showed a MIC and MBC of 0.25 μg/mL. This reduced the generation of pneumonic lung tissue to 5.83%, while the untreated infected group generated 60.51% of pneumonic tissue. Compound 7a proved to be an antimicrobial agent capable of inhibiting the in vitro development of S. aureus. Furthermore, 7a showed effectiveness in decreasing the progression of acute pneumonia induced by S. aureus in a murine model.
Collapse
Affiliation(s)
- L. Angel Veyna-Hurtado
- Doctorado en Ciencias Farmacobiológicas, Facultad de Ciencias Químicas, Universidad Autónoma de San Luis Potosí, San Luis Potosí 78210, Mexico;
| | - Hiram Hernández-López
- Laboratorio de Investigación en Síntesis Orgánica y Modificación Química, Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Zacatecas 98160, Mexico;
| | - Fuensanta del Rocío Reyes-Escobedo
- Laboratorio de Microbiología Sanitaria de Investigación y Servicio al Público, Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Zacatecas 98160, Mexico;
| | - Denisse de Loera
- Facultad de Ciencias Químicas, Universidad Autónoma de San Luis Potosí, San Luis Potosí 78210, Mexico;
| | - Salvador García-Cruz
- Laboratorio de Cirugía, Unidad Académica de Medicina Humana, Universidad Autónoma de Zacatecas, Zacatecas 98160, Mexico;
| | - Lorena Troncoso-Vázquez
- Departamento de Patología, Instituto Mexicano del Seguro Social (IMSS), Zacatecas 98160, Mexico;
| | - Marisol Galván-Valencia
- Laboratorio de Investigación en Patología y Productos Naturales, Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Zacatecas 98160, Mexico;
| | - Julio E. Castañeda-Delgado
- Investigador por México/Cátedras CONAHCYT (SECIHTI), Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social (IMSS), Zacatecas 98160, Mexico;
| | - Alberto Rafael Cervantes-Villagrana
- Laboratorio de Investigación en Terapéutica Experimental, Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Zacatecas 98160, Mexico
| |
Collapse
|
2
|
Roshni J, Sivakumar M, Alzahrani FM, Halawani IF, Alzahrani KJ, Patil S, Ahmed SSSJ. Virtual screening, molecular dynamics and density functional theory on pain inhibitors against TRPV1 associating inflammatory conditions. J Biomol Struct Dyn 2024; 42:6788-6798. [PMID: 37489910 DOI: 10.1080/07391102.2023.2237595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 07/08/2023] [Indexed: 07/26/2023]
Abstract
Transient receptor potential vanilloid 1 protein (TRPV1) is expressed widely in skin and sensory neurons that contribute to pain/heat sensation in the human system. TRPV1 gene polymorphisms are susceptible to multiple diseases and it is considered a therapeutic target for various inflammatory conditions. Among the TRPV1 variants, rs8065080 (1911 A > G) plays a vital role in painful osteoarthritis and migraine. The presence of rs8065080 polymorphism may render drug efficacy. This study aimed to identify better antagonists against wild-type and variant TRPV1 that may help in the relief of pain/inflammation. We constructed suitable TRPV1 protein structures for wild-type and rs8065080 variant through a homology modelling approach. A total of 3363 anti-inflammatory compounds with high chemical diversity and good drug-like properties were collected and screened against the generated structures. Molecular docking showed that nobilamide B had the highest binding affinity (-5.83 kcal/mol) towards the wild-type. Whereas, isoquinoline analogue displayed highest binding potency with the variant TRPV1 (-11.65 kcal/mol). Besides those, C18H15F3N4O showed affinity towards both wild-type (-5.53 kcal/mol) and variant TRPV1 (-9.75 kcal/mol). Then, molecular dynamic simulation revealed stable conformation in wild-type and variant TRPV1 upon binding of nobilmaide B, isoquinoline analogue and C18H15F3N4O. Additionally, density functional theory (DFT) using B3LYP hybrid function showed high chemical reactiveness of nobilamie B, isoquinoline analogue and C18H15F3N4O. Overall, our systematic investigations provide, C18H15F3N4O could be a potential analgesic inhibiting both wild-type and variant TRPV1 against inflammatory conditions.
Collapse
Affiliation(s)
- Jency Roshni
- Drug discovery and Multi-omics Lab, Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, India
| | - Mahema Sivakumar
- Drug discovery and Multi-omics Lab, Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, India
| | - Fuad M Alzahrani
- Department of Clinical Laboratories Sciences, College of Applied Medical Sciences, Taif University, Taif, Saudi Arabia
| | - Ibrahim F Halawani
- Department of Clinical Laboratories Sciences, College of Applied Medical Sciences, Taif University, Taif, Saudi Arabia
| | - Khalid J Alzahrani
- Department of Clinical Laboratories Sciences, College of Applied Medical Sciences, Taif University, Taif, Saudi Arabia
| | - Shankargouda Patil
- College of Dental Medicine, Roseman University of Health Sciences, South Jordan, Utah, USA
| | - Shiek S S J Ahmed
- Drug discovery and Multi-omics Lab, Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, India
| |
Collapse
|
3
|
Liu T, Cao L, Zhang T, Fu H. Molecular docking studies, anti-Alzheimer's disease, antidiabetic, and anti-acute myeloid leukemia potentials of narcissoside. Arch Physiol Biochem 2023; 129:405-415. [PMID: 33075241 DOI: 10.1080/13813455.2020.1828483] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
In this research, we explored their capacity for Narcissoside antioxidant and anticholinergic, antidiabetic, and anti-acute myeloid leukaemia. Narcissoside's antioxidant activities were elucidated by the use of various bioanalytical assays. Narcissoside's radical scavenging activities were evaluated by DPPH• and ABTS•+ scavenging activities. On the other hand, IC50 values were calculated for DPPH•, and ABTS•+ scavenging, acetylcholinesterase, and α-glucosidase inhibition effects of narcissoside. IC50 values narcissoside, as 11.54 nM for AChE and 65.58 nM for α-glucosidase were calculated with % Activity-[Inhibitory] graphs. Then, ADME/T analysis of narcissoside molecule was performed to calculate the drug becoming parameters.
Collapse
Affiliation(s)
- Tingting Liu
- Department of Hematology, People's Hospital of Jiangxi Province, Nanchang, Jiangxi, China
- Department of Hematology, Jiangxi Provincial People's Hospital Affiliated to Nanchang University, Nanchang, Jiangxi, China
- Key Biologic Laboratory of Blood Tumor Cell of Jiangxi Province, Nanchang, Jiangxi, China
| | - Lixia Cao
- Department of Hematology, People's Hospital of Jiangxi Province, Nanchang, Jiangxi, China
- Department of Hematology, Jiangxi Provincial People's Hospital Affiliated to Nanchang University, Nanchang, Jiangxi, China
- Key Biologic Laboratory of Blood Tumor Cell of Jiangxi Province, Nanchang, Jiangxi, China
| | - Tingting Zhang
- Department of Hematology, People's Hospital of Jiangxi Province, Nanchang, Jiangxi, China
- Department of Hematology, Jiangxi Provincial People's Hospital Affiliated to Nanchang University, Nanchang, Jiangxi, China
- Key Biologic Laboratory of Blood Tumor Cell of Jiangxi Province, Nanchang, Jiangxi, China
| | - Huan Fu
- Department of Hematology, People's Hospital of Jiangxi Province, Nanchang, Jiangxi, China
- Department of Hematology, Jiangxi Provincial People's Hospital Affiliated to Nanchang University, Nanchang, Jiangxi, China
- Key Biologic Laboratory of Blood Tumor Cell of Jiangxi Province, Nanchang, Jiangxi, China
| |
Collapse
|
4
|
Chen M, Zhao H, Cheng Y, Wang L, Alotaibi SH, Zhang Y. Anti-human Glioma Cancer Potentials of Neobavaisoflavone as Natural Antioxidant Compound and Its Inhibition Profiles for Acetylcholinesterase and Butyrylcholinesterase Enzymes with Molecular Modeling and Spin Density Distributions Studies. J Oleo Sci 2022; 71:277-288. [PMID: 35110469 DOI: 10.5650/jos.ess21288] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
In this study, the carcinogenic potential of Neobavaisoflavone as a natural antioxidant compound and the inhibitory profiles of acetylcholinesterase and butyrylcholinesterase were investigated by molecular modeling and spin density distribution studies. To evaluate the antioxidant properties of neobavaisoflavone, DPPH test was performed in the presence of butyl hydroxytoluene as a control. Neobavaisoflavone cell viability was low compared to normal human glioma cancer cell lines, namely LN-229, U-87 and A-172 cell lines, without any effect of cytotoxicity on normal cell line. Neobavaisoflavone inhibited half of DPPH at 125 μg/mL. The best effects of Neobavaisoflavone antihypertensive glioma against the above cell lines were in the LN-229 cell line. In addition, the significant anti-cancer potential of human glioma Neobavaisoflavone against the popular human glioma cancer cell lines is related in this study. IC50 values were calculated by Neobavaisoflavone diagrams, 63.87 nM for AChE and 112.98 nM for BuChE, % Activity- [Inhibitor]. According to the above results, Neobavaisoflavone can be used to treat a variety of human glioma cancers in humans. In addition, molecular modeling calculations were performed to compare the biochemical activities of the Neobavaisoflavone molecule with enzymes. After molecular insertion calculations, ADME/T analysis was performed to investigate the properties of the neobavaisoflavone molecule, which will be used as a drug in the future. Then, different parameters for the antioxidant activity of the neobavaisoflavone molecule were calculated.
Collapse
Affiliation(s)
- Mingsheng Chen
- Science and Technology Innovation Platform of Shaanxi Key Laboratory of Brain Disorders, Xi'an Medical University.,Department of Neurosurgery, The Second Affiliated Hospital of Xi'an Medical University
| | - Haikang Zhao
- Department of Neurosurgery, The Second Affiliated Hospital of Xi'an Medical University
| | - Yingying Cheng
- Department of Neurosurgery, The Second Affiliated Hospital of Xi'an Medical University
| | - Linlin Wang
- Department of Neurosurgery, The Second Affiliated Hospital of Xi'an Medical University
| | - Saad H Alotaibi
- Department of Chemistry, Turabah University College, Taif University
| | - Yuelin Zhang
- Science and Technology Innovation Platform of Shaanxi Key Laboratory of Brain Disorders, Xi'an Medical University
| |
Collapse
|
5
|
Li Y, Cheng R, Zou S, Zhang Y, Alotaibi SH, Xu L. A Pre-clinical Trial Study: Anti-human Colon Cancer Effect of Thalassiolin B in vitro with Enzymes Inhibition Effects and Molecular Docking Studies. J Oleo Sci 2022; 71:267-276. [PMID: 35110468 DOI: 10.5650/jos.ess21290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
In this study, it is recorded the inhibition effect of Thalassiolin B on aldose reductase, alpha-glucosidase and alpha-amylase enzymes. In the next step, the molecular docking method was used to compare the biological activities of the Thalassiolin B molecule against enzymes formed from the assembly of proteins. In these calculations, the enzymes used are Aldose reductase, Alpha-Amylase, and Alpha-Glucosidase, respectively. After the docking method, ADME/T analysis of Thalassiolin B molecule was performed to be used as a drug in the pharmaceutical industry. In the MTT assay, the anti-human colon cancer properties of Thalassiolin B against EB, LS1034, and SW480 cell lines were investigated. The cell viability of Thalassiolin B was very low against human colon cancer cell lines without any cytotoxicity on the human normal (HUVEC) cell line. The IC50 of the Thalassiolin B against EB, LS1034, and SW480 were 483, 252, and 236 µg/mL, respectively. Thereby, the best cytotoxicity results and anti-human colon cancer potentials of our Thalassiolin B were observed in the case of the SW480 cell line. Maybe the anti-human colon cancer properties of Thalassiolin B are related to their antioxidant effects.
Collapse
Affiliation(s)
- Yanzhen Li
- Department of Gastroenterology, Qinghai Provincial People's Hospital
| | - Ruhuan Cheng
- Department of Gastroenterology, Huaian Hongze District People's Hospital
| | - Shaojing Zou
- Department of Gastroenterology, Huaian Hongze District People's Hospital
| | - Yun Zhang
- Department of Gastroenterology, Huangyan Hospital of Wenzhou Medical University, Taizhou First People's Hospital
| | - Saad H Alotaibi
- Department of Chemistry, Turabah University College, Taif University
| | - Long Xu
- Department of Gastroenterology, Shenzhen University General Hospital
| |
Collapse
|
6
|
Novel phenolic Mannich base derivatives: synthesis, bioactivity, molecular docking, and ADME-Tox Studies. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2022. [DOI: 10.1007/s13738-021-02331-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
7
|
El Faydy M, Dahaieh N, Ounine K, Lakhrissi B, Warad I, Tüzün B, Zarrouk A. Synthesis, Identification, Antibacterial Activity, ADME/T and 1BNA-Docking Investigations of 8-Quinolinol Analogs Bearing a Benzimidazole Moiety. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2022. [DOI: 10.1007/s13369-021-05749-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
8
|
Akkoç S, Tüzün B, Özalp A, Kökbudak Z. Investigation of structural, electronical and in vitro cytotoxic activity properties of some heterocyclic compounds. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131127] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
|
9
|
Şenocak A, Taş NA, Taslimi P, Tüzün B, Aydin A, Karadağ A. Novel amino acid Schiff base Zn(II) complexes as new therapeutic approaches in diabetes and Alzheimer's disease: Synthesis, characterization, biological evaluation, and molecular docking studies. J Biochem Mol Toxicol 2021; 36:e22969. [PMID: 34812557 DOI: 10.1002/jbt.22969] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Revised: 08/25/2021] [Accepted: 10/13/2021] [Indexed: 01/05/2023]
Abstract
Schiff bases are compounds that have gained importance in the paint industry due to their colorful nature and in the field of chemistry and biochemistry due to their biological activities. Various biological applications of Schiff bases, such as antitumor, antifungal, antibacterial, antioxidant, antituberculosis, and anthelmintic, have been widely studied. Within the scope of the study, 5-bromo-2-hydroxybenzaldehyde and amino acid methyl esters (isoleucine, phenylalanine, and methionine) and amino acid Schiff bases were synthesized first. The synthesis of the new Zn(II) complexes of these Schiff bases was carried out by the reaction of synthesized Schiff bases and Zn(OAc)2 ·2H2 O. The structures of the synthesized complexes were elucidated using elemental analysis, Fourier transform infrared, nuclear magnetic resonance, UV-visible, and thermal analysis spectroscopy techniques. These synthesized salts were found to be effective inhibitor compounds for the α-glycosidase, and acetylcholinesterase enzyme with Ki values in the range of 30.50 ± 3.82-38.17 ± 6.26 µM for α-glycosidase, 3.68 ± 0.54-10.27 ± 1.68 µM for butyrylcholinesterase, and 6.26 ± 0.83-15.73 ± 4.73 µM for acetylcholinesterase, respectively.
Collapse
Affiliation(s)
- Ayşegül Şenocak
- Chemistry Department, Art and Science Faculty, Tokat Gaziosmanpasa University, Tokat, Turkey
| | - Nilay A Taş
- Chemistry Department, Art and Science Faculty, Tokat Gaziosmanpasa University, Tokat, Turkey.,Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Burak Tüzün
- Chemistry Department, Science Faculty, Sivas Cumhuriyet University, Sivas, Turkey
| | - Ali Aydin
- Department of Basic Medical Science, Yozgat Bozok University, Yozgat, Turkey
| | - Ahmet Karadağ
- Department of Chemistry, Faculty of Arts and Sciences, Yozgat Bozok University, Yozgat, Turkey
| |
Collapse
|
10
|
Synthesis, bioinformatics and biological evaluation of novel pyridine based on 8-hydroxyquinoline derivatives as antibacterial agents: DFT, molecular docking and ADME/T studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130934] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
11
|
Ojha M, Yadav D, Kumar A, Dasgupta S, Yadav R. 1,8-Naphthyridine Derivatives: A Privileged Scaffold for Versatile Biological Activities. Mini Rev Med Chem 2021; 21:586-601. [PMID: 33038911 DOI: 10.2174/1389557520666201009162804] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Revised: 06/27/2020] [Accepted: 08/10/2020] [Indexed: 11/22/2022]
Abstract
1, 8- Naphthyridine nucleus belongs to significant nitrogen-containing heterocyclic compounds which has garnered the interest of researchers due to its versatile biological activities. It is known to be used as an antimicrobial, anti-psychotic, anti-depressant, anti-convulsant, anti- Alzheimer's, anti-cancer, analgesic, anti-inflammatory, antioxidant, anti-viral, anti-hypertensive, antimalarial, pesticides, anti-platelets, and CB2 receptor agonist, etc. The present review highlights the framework of biological properties of synthesized 1, 8-naphthyridine derivatives developed by various research groups across the globe.
Collapse
Affiliation(s)
- Madhwi Ojha
- Department of Pharmacy, Banasthali Vidyapith, Banasthali, Rajasthan-304022, India
| | - Divya Yadav
- Department of Pharmacy, Banasthali Vidyapith, Banasthali, Rajasthan-304022, India
| | - Avinash Kumar
- Department of Pharmaceutical Chemistry, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka- 576104, India
| | - Suman Dasgupta
- Department of Molecular Biology & Biotechnology, Tezpur University, Nappam, Sonitpur-784028, Assam, India
| | - Rakesh Yadav
- Department of Pharmacy, Banasthali Vidyapith, Banasthali, Rajasthan-304022, India
| |
Collapse
|
12
|
Riaz MT, Yaqub M, Shafiq Z, Ashraf A, Khalid M, Taslimi P, Tas R, Tuzun B, Gulçin İ. Synthesis, biological activity and docking calculations of bis-naphthoquinone derivatives from Lawsone. Bioorg Chem 2021; 114:105069. [PMID: 34134033 DOI: 10.1016/j.bioorg.2021.105069] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 05/31/2021] [Accepted: 06/05/2021] [Indexed: 12/14/2022]
Abstract
Some metabolic enzyme inhibitors can be used as Multi-target-Directed-Ligands (MTDL) in Medicinal chemistry therefore, synthesis and determination of alternative inhibitors are essential. In this study, novel bis-napthoquinone derivatives (5a-o) were synthesized through a multi-component cascade reaction of two molecules of 2-hydroxy-1,4-naphthoquinone with an aromatic aldehyde in basic media using triethylamine as a catalyst. This novel heterocyclic derivatives (5a-o) are applied to inhibit the carbonic anhydrase (hCA I and hCA II) isoform in low levels of nano molecules with Ki values exist between 4.62 ± 1.01 to 70.45 ± 9.03 nM for hCA I and for hCA II which is physiologically dominant Kis values are in the range of 5.61 ± 1.04 to 73.26 ± 10.25 nM. Further these novel derivatives (5a-o) efficiently inhibit AChE with Ki values in the range of 0.13 ± 0.02 to 3.16 ± 0.56 nM. The compounds are also applied for BChE with Ki values varying between 0.50 ± 0.10 to 9.23 ± 1.15 nM. For α-glycosidase, the most efficient Ki values of 5e and 5f are 76.14 ± 9.60 and 95.27 ± 12.55 nM respectively. Finally, molecular docking calculations against enzymes (acetylcholinesterase, butyrylcholinesterase, and the human carbonic anhydrase I and II) are compared using biological activities of heterocyclic derivatives. After these calculations, an ADME/T analysis is performed to study the future medicinal use of heterocyclic derivatives from lawsone.
Collapse
Affiliation(s)
- Muhammad Tariq Riaz
- Institute of Chemical Sciences, Organic Chemistry Division, Bahauddin Zakariya University, Multan 60800, Pakistan
| | - Muhammad Yaqub
- Institute of Chemical Sciences, Organic Chemistry Division, Bahauddin Zakariya University, Multan 60800, Pakistan.
| | - Zahid Shafiq
- Institute of Chemical Sciences, Organic Chemistry Division, Bahauddin Zakariya University, Multan 60800, Pakistan
| | - Abida Ashraf
- Institute of Chemical Sciences, Organic Chemistry Division, Bahauddin Zakariya University, Multan 60800, Pakistan
| | - Muhammad Khalid
- Department of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, 74100 Bartin, Turkey; Department of Chemistry, Faculty of Science, Istinye University, Istanbul, Turkey
| | - Recep Tas
- Department of Biotechnology, Faculty of Science, Bartin University, 74100 Bartin, Turkey
| | - Burak Tuzun
- Department of Chemistry, Faculty of Science, Cumhuriyet University, 58140 Sivas, Turkey
| | - İlhami Gulçin
- Department of Chemistry, Faculty of Science, Ataturk University, 25240 Erzurum, Turkey
| |
Collapse
|
13
|
ADME properties, bioactivity and molecular docking studies of 4-amino-chalcone derivatives: new analogues for the treatment of Alzheimer, glaucoma and epileptic diseases. In Silico Pharmacol 2021; 9:34. [PMID: 33968600 DOI: 10.1007/s40203-021-00094-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Accepted: 04/23/2021] [Indexed: 10/21/2022] Open
Abstract
In this study, in vitro inhibition effects of (E)-1-(4-aminophenyl)-3-(aryl) prop-2-en-1-one (4-amino-chalcones) derivatives (3a-o) on acetylcholinesterase (AChE) enzyme and human erythrocyte carbonic anhydrase I and II isoenzymes (hCA I- II) were investigated. And also, the biological activities of 4-amino-chalcone derivatives against enzymes which names are acetylcholinesterase (PDB ID: 1OCE), human Carbonic Anhydrase I (PDB ID: 2CAB), human carbonic anhydrase II (PDB ID: 3DC3), were compared. After the results obtained, ADME/T analysis was performed in order to use 4-amino-chalcone derivatives as a drug in the future. Effective inhibitors of carbonic anhydrase I and II isozymes (hCAI and II) and acetylcholinesterase (AChE) enzymes with Ki values in the range of 2.55 ± 0.35-11.75 ± 3.57 nM for hCA I, 4.31 ± 0.78-17.55 ± 5.86 nM for hCA II and 96.01 ± 25.34-1411.41 ± 32.88 nM for AChE, respectively, were the 4-amino-chalcone derivatives (3a-o) molecules. Supplementary Information The online version contains supplementary material available at 10.1007/s40203-021-00094-x.
Collapse
|
14
|
Erdoğan M, Taslimi P, Tuzun B. Synthesis and docking calculations of tetrafluoronaphthalene derivatives and their inhibition profiles against some metabolic enzymes. Arch Pharm (Weinheim) 2021; 354:e2000409. [PMID: 33666284 DOI: 10.1002/ardp.202000409] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 02/04/2021] [Accepted: 02/05/2021] [Indexed: 12/23/2022]
Abstract
Syntheses of tetrahydroepoxy, O-allylic, O-prenylic, and O-propargylic tetrafluoronaphthalene derivatives, starting from 1-bromo-2,3,4,5,6-pentafluorobenzene, are reported here for the first time. The O-substituted tetrafluoronaphthalene derivatives were designed and also synthesized via a one-pot nucleophilic substitution reaction in excellent yields, whereas the tetrafluorotetrahydroepoxynaphthalene derivate was synthesized via a reduction reaction in excellent yield. The chemical structures of all the synthesized molecules were characterized by nuclear magnetic resonance, infrared spectroscopy, and high-resolution mass spectrometry techniques. In this study, a series of novel tetrafluoronaphthalene derivatives (2, 2a, 4-6) was tested toward several enzymes including α-glucosidase, acetylcholinesterase (AChE), and human carbonic anhydrase I and II (hCA I/II). The tetrafluoronaphthalene derivatives 2, 2a, and 4-6 showed IC50 and Ki values in the range of 0.83-1.27 and 0.71-1.09 nM against hCA I, 1.26-1.85 and 1.45-5.31 nM against hCA II, 39.02-56.01 and 20.53-56.76 nM against AChE, and 15.27-34.12 and 22.58-30.45 nM against α-glucosidase, respectively. Molecular docking calculations were made to determine the biological activity values of the tetrafluoronaphthalene derivatives against the enzymes. After the calculations, ADME/T analysis was performed to examine the effects on human metabolism. Finally, these compounds had antidiabetic and anticholinesterase potentials.
Collapse
Affiliation(s)
- Musa Erdoğan
- Department of Food Engineering, Faculty of Engineering and Architecture, Kafkas University, Kars, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Burak Tuzun
- Chemistry Department, Science Faculty, Sivas Cumhuriyet University, Sivas, Turkey
| |
Collapse
|
15
|
Ryabchenko OB, Kuarton LA, Svistunova IV. New evidence on non-covalent interactions in crystalline halo-substituted boron difluoride acetylacetonates from vibrational spectra, model calculations and visualization program tools. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129532] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
16
|
TÜZÜN B. Examination of anti-oxidant properties and molecular docking parameters of some compounds in human body. ACTA ACUST UNITED AC 2020. [DOI: 10.33435/tcandtc.781008] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|
17
|
Gezegen H, Gürdere MB, Dinçer A, Özbek O, Koçyiğit ÜM, Taslimi P, Tüzün B, Budak Y, Ceylan M. Synthesis, molecular docking, and biological activities of new cyanopyridine derivatives containing phenylurea. Arch Pharm (Weinheim) 2020; 354:e2000334. [PMID: 33300644 DOI: 10.1002/ardp.202000334] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Revised: 11/07/2020] [Accepted: 11/13/2020] [Indexed: 02/07/2023]
Abstract
A new class of cyanopyridine derivatives (10a-e and 11a-e) containing the phenylurea unit was synthesized and tested against some metabolic enzymes including acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and α-glycosidase (α-Gly). The new cyanopyridine derivatives showed Ki values in the range of 40.73 ± 6.54 to 87.05 ± 16.98 µM against AChE, 29.17 ± 4.88 to 124.03 ± 22.43 µM against BChE, and 3.66 ± 0.93 to 26.33 ± 5.05 µM against α-Gly. These inhibition effects were compared with standard enzyme inhibitors like tacrine (for AChE and BChE) and acarbose (for α-Gly). Also, these cyanopyridine derivatives with the best inhibition score were docked into the active site of the indicated metabolic enzymes. Finally, molecular docking calculations were made to compare the biological activities of the compounds against AChE (-8.81 kcal/mol for molecule 11d), BChE (-3.52 kcal/mol for molecule 11d), and α-Gly (-2.98 kcal/mol for molecule 11a). After molecular docking calculations, the ADME/T analysis was performed to examine the future drug use properties of the new cyanopyridine derivatives containing phenylurea.
Collapse
Affiliation(s)
- Hayreddin Gezegen
- Department of Nutrition and Dietetics, Faculty of Health Sciences, Cumhuriyet University, Sivas, Turkey
| | - Meliha B Gürdere
- Department of Chemistry, Faculty of Science and Arts, Tokat Gaziosmanpaşa University, Tokat, Turkey
| | - Ayşegül Dinçer
- Department of Chemistry, Faculty of Science and Arts, Tokat Gaziosmanpaşa University, Tokat, Turkey
| | - Oğuz Özbek
- Science and Technology, Application and Research Center, Zonguldak Bülent Ecevit University, Zonguldak, Turkey
| | - Ümit M Koçyiğit
- Department of Basic Pharmaceutical Sciences, Division of Biochemistry, Faculty of Pharmacy, Sivas Cumhuriyet University, Sivas, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Burak Tüzün
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Yakup Budak
- Department of Chemistry, Faculty of Science and Arts, Tokat Gaziosmanpaşa University, Tokat, Turkey
| | - Mustafa Ceylan
- Department of Chemistry, Faculty of Science and Arts, Tokat Gaziosmanpaşa University, Tokat, Turkey
| |
Collapse
|
18
|
Taslimi P, Türkan F, Güngördü Solğun D, Aras A, Erden Y, Celebioglu HU, Tuzun B, Ağırtaş MS, Günay S, Gulcin I. Metal contained Phthalocyanines with 3,4-Dimethoxyphenethoxy substituents: their anticancer, antibacterial activities and their inhibitory effects on some metabolic enzymes with molecular docking studies. J Biomol Struct Dyn 2020; 40:2991-3002. [PMID: 33234029 DOI: 10.1080/07391102.2020.1844051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
The compounds (3-6) used in this study were re-synthesized in accordance with our previous study. The inhibitory effect of the complexes on some metabolic enzymes was examined and it was demonstrated that the enzymes inhibited by ligands and their complex molecules at micromolar level. The best Ki value for α-glycosidase enzyme was absorved 1.01±0.08 µM for compound 6. The biological activity of ligand and metal complexes against enzymes was compared with molecular docking method. The enzymes used against ligand and metal complexes respectively: Achethylcholinesterase for ID 4M0E (AChE), butyrylcholinesterase for ID 5NN0 (BChE), α-glycosidase for ID 1XSI (α-Gly). ADME analysis was performed to examine the drug properties of the compounds (3-6). Besides, the anticancer properties of the complexes were studied. The doses of all compounds caused significant reductions in MCF-7 cell viability. The 3 and 5 compounds administered to PC-3 cells exhibited a more pronounced cytotoxic effect than the other two compounds (4 and 6). Furthermore, antibacterial activities of these compounds against Escherichia coli and Staphylococcus aureus were examined.Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Fikret Türkan
- Health Services Vocational School, Igdır University, Igdır, Turkey
| | - Derya Güngördü Solğun
- Department of Chemistry, Faculty of Science, Van Yuzuncu Yıl University, Van, Turkey
| | - Abdülmelik Aras
- Department of Biochemistry, Faculty of Science and Arts, Iğdır University, Iğdır, Turkey
| | - Yavuz Erden
- Department of Molecular Biology and Genetics, Faculty of Science, Bartin University, Bartin, Turkey
| | | | - Burak Tuzun
- Department of Chemistry, Faculty of Science, Cumhuriyet University, Sivas, Turkey
| | - Mehmet Salih Ağırtaş
- Department of Chemistry, Faculty of Science, Van Yuzuncu Yıl University, Van, Turkey
| | - Sevilay Günay
- Department of Molecular Biology and Genetics, Faculty of Science, Bartin University, Bartin, Turkey
| | - Ilhami Gulcin
- Department of Chemistry, Faculty of Science, Ataturk University, Erzurum, Turkey
| |
Collapse
|
19
|
Taslimi P, Kocyigit UM, Tüzün B, Kirici M. Biological effects and molecular docking studies of Catechin 5-O-gallate: antioxidant, anticholinergics, antiepileptic and antidiabetic potentials. J Biomol Struct Dyn 2020; 40:2489-2497. [PMID: 33146092 DOI: 10.1080/07391102.2020.1840440] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Umit M. Kocyigit
- Department of Basic Pharmaceutical Sciences, Division of Biochemistry, Faculty of Pharmacy, Sivas Cumhuriyet University, Sivas, Turkey
| | - Burak Tüzün
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Mahinur Kirici
- Department of Chemistry, Faculty of Arts and Sciences, Bingol University, Turkey
| |
Collapse
|
20
|
Taslimi P. In vitro inhibitory effects of some acetophenone derivatives on some metabolic enzymes and molecular docking. Arch Pharm (Weinheim) 2020; 353:e2000210. [DOI: 10.1002/ardp.202000210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 08/01/2020] [Accepted: 08/10/2020] [Indexed: 12/13/2022]
Affiliation(s)
- Parham Taslimi
- Department of Biotechnology, Faculty of Science Bartin University Bartin Turkey
| |
Collapse
|
21
|
Huseynova A, Kaya R, Taslimi P, Farzaliyev V, Mammadyarova X, Sujayev A, Tüzün B, Kocyigit UM, Alwasel S, Gulçin İ. Design, synthesis, characterization, biological evaluation, and molecular docking studies of novel 1,2-aminopropanthiols substituted derivatives as selective carbonic anhydrase, acetylcholinesterase and α-glycosidase enzymes inhibitors. J Biomol Struct Dyn 2020; 40:236-248. [DOI: 10.1080/07391102.2020.1811772] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Afat Huseynova
- Laboratory of ‘Fine Organic Synthesis’ of Baku State University, Baku, Azerbaijan
| | - Ruya Kaya
- Agri Ibrahim Cecen University Central Research and Application Laboratory, Agri, Turkey
- Faculty of Science, Department of Chemistry, Atatürk University, Erzurum, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Vagif Farzaliyev
- Laboratory of Theoretical Bases of Synthesis and Action Mechanism of Additives, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Xadija Mammadyarova
- Laboratory of Theoretical Bases of Synthesis and Action Mechanism of Additives, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Afsun Sujayev
- Laboratory of Theoretical Bases of Synthesis and Action Mechanism of Additives, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Burak Tüzün
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Umit M. Kocyigit
- Department of Basic Pharmaceutical Sciences, Division of Biochemistry, Faculty of Pharmacy, Sivas Cumhuriyet University, Sivas, Turkey
| | - Saleh Alwasel
- Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - İlhami Gulçin
- Faculty of Science, Department of Chemistry, Atatürk University, Erzurum, Turkey
| |
Collapse
|
22
|
Demir Y, Taslimi P, Koçyiğit ÜM, Akkuş M, Özaslan MS, Duran HE, Budak Y, Tüzün B, Gürdere MB, Ceylan M, Taysi S, Gülçin İ, Beydemir Ş. Determination of the inhibition profiles of pyrazolyl-thiazole derivatives against aldose reductase and α-glycosidase and molecular docking studies. Arch Pharm (Weinheim) 2020; 353:e2000118. [PMID: 32761859 DOI: 10.1002/ardp.202000118] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 06/08/2020] [Accepted: 07/11/2020] [Indexed: 12/14/2022]
Abstract
Aldose reductase (AR) is the first and rate-limiting enzyme of the polyol pathway, which converts glucose to sorbitol in an NADPH-dependent reaction. α-Glycosidase breaks down starch and disaccharides to glucose. Hence, inhibition of these enzymes can be regarded a considerable approach in the treatment of diabetic complications. AR was purified from sheep liver using simple chromatographic methods. The inhibitory effects of pyrazolyl-thiazoles ((3aR,4S,7R,7aS)-2-(4-{1-[4-(4-bromophenyl)thiazol-2-yl]-5-(aryl)-4,5-dihydro-1H-pyrazol-3-yl}phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione derivatives; 3a-i) on AR and α-glycosidase enzymes were investigated. All compounds showed a good inhibitory action against AR and α-glycosidase. Among these compounds, compound 3d exhibited the best inhibition profiles against AR, with a Ki value of 7.09 ± 0.19 µM, whereas compound 3e showed the lowest inhibition effects, with a Ki value of 21.89 ± 1.87 µM. Also, all compounds showed efficient inhibition profiles against α-glycosidase, with Ki values in the range of 0.43 ± 0.06 to 2.30 ± 0.48 µM, whereas the Ki value of acarbose was 12.60 ± 0.78 µM. Lastly, molecular modeling approaches were implemented to predict the binding affinities of compounds against AR and α-glycosidase. In addition, the ADME analysis of the molecules was performed.
Collapse
Affiliation(s)
- Yeliz Demir
- Department of Pharmacy Services, Nihat Delibalta Göle Vocational High School, Ardahan University, Ardahan, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Ümit M Koçyiğit
- Department of Basic Pharmaceutical Sciences, Division of Biochemistry, Faculty of Pharmacy, Cumhuriyet University, Sivas, Turkey
| | - Musa Akkuş
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkey
| | - Muhammet Serhat Özaslan
- Department of Pharmacy Services, Nihat Delibalta Göle Vocational High School, Ardahan University, Ardahan, Turkey
| | - Hatice Esra Duran
- Department of Biochemistry, Medical School, Kafkas University, Kars, Turkey
| | - Yakup Budak
- Department of Chemistry, Faculty of Arts and Sciences, Gaziosmanpasa University, Tokat, Turkey
| | - Burak Tüzün
- Department of Chemistry, Faculty of Science, Cumhuriyet University, Sivas, Turkey
| | - Meliha B Gürdere
- Department of Chemistry, Faculty of Arts and Sciences, Gaziosmanpasa University, Tokat, Turkey
| | - Mustafa Ceylan
- Department of Chemistry, Faculty of Arts and Sciences, Gaziosmanpasa University, Tokat, Turkey
| | - Seyithan Taysi
- Department of Biochemistry and Clinical Biochemistry, Medical School, Gaziantep University, Gaziantep, Turkey
| | - İlhami Gülçin
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkey
| | - Şükrü Beydemir
- Department of Biochemistry, Faculty of Pharmacy, Anadolu University, Eskişehir, Turkey.,The Rectorate of Bilecik Şeyh Edebali University, Bilecik, Turkey
| |
Collapse
|
23
|
Genc Bilgicli H, Ergon D, Taslimi P, Tüzün B, Akyazı Kuru İ, Zengin M, Gülçin İ. Novel propanolamine derivatives attached to 2-metoxifenol moiety: Synthesis, characterization, biological properties, and molecular docking studies. Bioorg Chem 2020; 101:103969. [DOI: 10.1016/j.bioorg.2020.103969] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 05/13/2020] [Accepted: 05/22/2020] [Indexed: 02/07/2023]
|
24
|
Taslimi P, Erden Y, Mamedov S, Zeynalova L, Ladokhina N, Tas R, Tuzun B, Sujayev A, Sadeghian N, Alwasel SH, Gulcin I. The biological activities, molecular docking studies, and anticancer effects of 1-arylsuphonylpyrazole derivatives. J Biomol Struct Dyn 2020; 39:3336-3346. [PMID: 32364008 DOI: 10.1080/07391102.2020.1763838] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
This work is devoted to definition of the direction of reaction between 1-benzenesulfonylimino pyridinium chloride and α- or β-halo-containing sulfamides, chloroacetic acid, 1-chloro-2,3-dihydroxypropane, etc. The optimal conditions for the synchronous reaction of heterocyclization are determined. Benzenesulfonyliminopyridinium chloride was obtained to form pyrazolopyridines with 1,2-polarophiles, and pyridazine pyridines with 1,3-polarophiles. These novel derivatives were found as effective inhibitors of the α-glycosidase with Ki values in the range of 13.66 ± 2.63-60.63 ± 12.71 nM. The molecules (II-X) against enzyme were compared theoretically with the help of molecular docking to compare biological activities. The results were compared with the numerical values of the parameters obtained from molecular docking calculations and found to be in great agreement with the experimental results. However, ADME analysis of molecules was performed. Also, the compounds exhibited significant anticancer effect depending on the doses administered.Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Parham Taslimi
- Faculty of Science, Department of Biotechnology, Bartin University, Bartin, Turkey
| | - Yavuz Erden
- Faculty of Science, Department of Molecular Biology and Genetics, Bartin University, Bartin, Turkey
| | - Sabir Mamedov
- Laboratory of Faine Organic Synthesis, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Lala Zeynalova
- Laboratory of Faine Organic Synthesis, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Nina Ladokhina
- Laboratory of Faine Organic Synthesis, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Recep Tas
- Faculty of Science, Department of Biotechnology, Bartin University, Bartin, Turkey
| | - Burak Tuzun
- Faculty of Sciences, Department of Chemistry, Cumhuriyet University, Sivas, Turkey
| | - Afsun Sujayev
- Laboratory of Faine Organic Synthesis, Institute of Chemistry of Additives, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Nastaran Sadeghian
- Faculty of Sciences, Department of Chemistry, Ataturk University, Erzurum, Turkey
| | - Saleh H Alwasel
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Ilhami Gulcin
- Faculty of Sciences, Department of Chemistry, Ataturk University, Erzurum, Turkey
| |
Collapse
|
25
|
Azad I, Akhter Y, Khan T, Azad MI, Chandra S, Singh P, Kumar D, Nasibullah M. Synthesis, quantum chemical study, AIM simulation, in silico ADMET profile analysis, molecular docking and antioxidant activity assessment of aminofuran derivatives. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127285] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
|
26
|
Erkan S, Kaya S, Sayin K, Karakaş D. Structural, spectral characterization and molecular docking analyses of mer-ruthenium (II) complexes containing the bidentate chelating ligands. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 224:117399. [PMID: 31344575 DOI: 10.1016/j.saa.2019.117399] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 06/10/2023]
Abstract
In this study, we analyzed some monofunctional Ru (II) complexes containing chlorine, bromine and fluorine atoms around the central atom. The best calculation level among HF, B3LYP and M062X methods for [Ru (Cl-Ph-tpy)(NN)X]+ (X = F, Cl, Br) was determined in the light of Benchmark analysis and according to this analysis results, the best level is shown as B3LYP-LANL2DZ/6-31G(d). In addition to this, the spectroscopic data (IR, NMR and UV-Vis) were also obtained in agreement with experimental results. The tendency of anticancer activity and structural activity relationship (SAR) parameters are predicted with some quantum chemical methods. Surface and contour diagrams, as well as electron densities on mentioned complexes were interpreted through theoretically obtained results. Finally, the anticancer activity tendency of the relevant complexes on the human cervical carcinoma cell line (ID: 1 M17) is supported by molecular docking calculations.
Collapse
Affiliation(s)
- Sultan Erkan
- Sivas Cumhuriyet University Yıldızeli Vocational School, Department of Chemistry and Chemical Processing Technologies, 58140 Sivas, Turkey.
| | - Serpil Kaya
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| | - Koray Sayin
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, 58140 Sivas, Turkey; Sivas Cumhuriyet University Advanced Research and Application Center (CUTAM), 58140 Sivas, Turkey.
| | - Duran Karakaş
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| |
Collapse
|
27
|
Tüzün B, Sayin K. Investigations over optical properties of boron complexes of benzothiazolines. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 208:48-56. [PMID: 30292150 DOI: 10.1016/j.saa.2018.09.060] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 09/16/2018] [Accepted: 09/30/2018] [Indexed: 06/08/2023]
Abstract
Quantum chemical analyses over benzothiazolines and their boron complexes are performed. In calculations, M06-2X method was selected with 6-31 + G(d,p) level. Structural and spectral (IR and NMR) characterization of studied compounds are done in detail. Quantum chemical descriptors (QCDs) are calculated to investigate the optical properties. Furthermore, molecular electrostatic potential (MEP) maps of the studied compounds are calculated by using electro-static potential (ESP) charges. According to QCDs and MEP maps, NLO properties of boron complexes are more than those of benzothiazolines and (Z)-2-((pyridin-2-ylmethylene)amino) benzenethiolatebutane-1,3-bis(olate)boron(III), complex (7), has the most NLO activity in studied compounds. Finally, solvent effect on NLO activity are investigated by calculating UV-vis spectrum in gas phase (ε = 1), toluene (ε = 2.3741), chloroform (ε = 4.7113), methanol (ε = 32.613), water (ε = 78.3553) and n-methylformamide-mixture (ε = 181.56). According to these spectra results, NLO activity mainly increases with increasing of polarizability of media.
Collapse
Affiliation(s)
- Burak Tüzün
- Sivas Cumhuriyet University, Science Faculty, Chemistry Department, 58140 Sivas, Turkey
| | - Koray Sayin
- Sivas Cumhuriyet University, Science Faculty, Chemistry Department, 58140 Sivas, Turkey.
| |
Collapse
|
28
|
Kuarton LA, Ryabchenko OB, Svistunova IV, Bukvetskii BV. Structure and vibrational spectra of iodo-, acetoxy- and thiocyanato-substituted acetylacetonates of boron difluoride. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.07.100] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
|
29
|
Sayin K. Investigation of structural and biological properties of N-heterocyclic carbene silver(I) and palladium(II) complexes. J COORD CHEM 2018. [DOI: 10.1080/00958972.2018.1511050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Koray Sayin
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| |
Collapse
|
30
|
Sayin K, Karakaş D. Investigation of structural, electronic properties and docking calculations of some boron complexes with norfloxacin: A computational research. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 202:276-283. [PMID: 29800890 DOI: 10.1016/j.saa.2018.05.055] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Revised: 05/14/2018] [Accepted: 05/15/2018] [Indexed: 06/08/2023]
Abstract
Quantum chemical calculations are performed over BF2R (1), B(NO)2R (2), B(CN)2R (3) and B(CH3)2R (4) [R: 1-ethyl-6-fluoro-4-oxo-7-(piperazin-1-yl)-1,4-dihydroquinoline-3-carboxylate]. Mentioned boron complex with fluorine atoms which is BF2R are optimized at HF/6-31+G(d), B3LYP/6-31+G(d) and M062X/6-31+G(d) level and the best level is determined by comparison of experimental and calculated results. The best calculation level is determined as M06-2X/6-31+G(d) level. The other complexes are optimized at this level. Structural properties, IR and NMR spectrum are examined in detail. Additionally, biological activities of mentioned complexes are investigated by some quantum chemical descriptors (EHOMO, ELUMO, I, A, EGAP, η, σ, χ, CP, ω, N, ΔNmax and S) and molecular docking analyses. The interaction energies for complex (1), (2), (3) and (4) are calculated as -480.1, -443.6, -433.6 and -402.1 kJ mol-1, respectively. As a result, it is found that boron complex with fluorine atoms (BF2R) is the best candidate for anticancer drug.
Collapse
Affiliation(s)
- Koray Sayin
- Department of Chemistry, Faculty of Science, Cumhuriyet University, 58140 Sivas, Turkey.
| | - Duran Karakaş
- Department of Chemistry, Faculty of Science, Cumhuriyet University, 58140 Sivas, Turkey.
| |
Collapse
|
31
|
Sayin K, Karakaş D. Quantum chemical investigation of levofloxacin-boron complexes: A computational approach. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.01.016] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
32
|
İnan A, İkiz M, Tayhan SE, Bilgin S, Genç N, Sayın K, Ceyhan G, Köse M, Dağ A, İspir E. Antiproliferative, antioxidant, computational and electrochemical studies of new azo-containing Schiff base ruthenium(ii) complexes. NEW J CHEM 2018. [DOI: 10.1039/c7nj04420h] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new series of ruthenium(ii) complexes 7–11 containing the –NN– group are synthesized and characterized via elemental analysis, and IR, UV-visible and 1H–13C NMR spectroscopy.
Collapse
|