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Boulksibat A, Tempio A, Bardoni B. Central role of altered phosphodiesterase 2-dependent signaling in the pathophysiology of cognition-based brain disorders. Neural Regen Res 2025; 20:2302-2303. [PMID: 39359080 PMCID: PMC11759023 DOI: 10.4103/nrr.nrr-d-24-00588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 06/13/2024] [Accepted: 06/27/2024] [Indexed: 10/04/2024] Open
Affiliation(s)
- Asma Boulksibat
- Institut de Pharmacologie Moléculaire et Cellulaire, CNRS UMR7275, Inserm U1323, Valbonne, France
| | - Alessandra Tempio
- Institut de Pharmacologie Moléculaire et Cellulaire, CNRS UMR7275, Inserm U1323, Valbonne, France
| | - Barbara Bardoni
- Institut de Pharmacologie Moléculaire et Cellulaire, CNRS UMR7275, Inserm U1323, Valbonne, France
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Barceló E, Mosquera-Heredia MI, Vidal OM, Bolívar DA, Allegri R, Morales LC, Silvera-Redondo C, Arcos-Burgos M, Garavito-Galofre P, Vélez JI. Deficits of Alzheimer's Disease Neuropsychological Architecture Correlate with Specific Exosomal mRNA Expression: Evidence of a Continuum? Int J Mol Sci 2025; 26:4897. [PMID: 40430038 PMCID: PMC12112302 DOI: 10.3390/ijms26104897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2025] [Revised: 05/16/2025] [Accepted: 05/18/2025] [Indexed: 05/29/2025] Open
Abstract
Alzheimer's disease (AD) is a neurodegenerative disorder characterized by cognitive decline and complex molecular changes. Extracellular vesicles (EVs), particularly exosomes, play a key role in intercellular communication and disease progression, transporting proteins, lipids, and nucleic acids. While altered exosomal mRNA profiles have emerged as potential biomarkers for AD, the relationship between mRNA expression and AD neuropsychological deficits remains unclear. Here, we investigated the correlation between exosomx10-derived mRNA signatures and neuropsychological performance in a cohort from Barranquilla, Colombia. Expression profiles of 16,585 mRNAs in 15 AD patients and 15 healthy controls were analysed using Generalized Linear Models (GLMs) and the Predictive Power Score (PPS). We identified significant correlations between specific mRNA signatures and key neuropsychological variables, including the Mini-Mental State Examination (MMSE), Montreal Cognitive Assessment (MoCA), Functional Assessment Screening Tool (FAST), Boston Naming Test, and Rey-Osterrieth Figure test. These mRNAs were in key AD-associated genes (i.e., GABRB3 and CADM1), while other genes are novel (i.e., SHROOM3, SLC7A2, GJB4, and XBP1). PPS analyses further revealed predictive relationships between mRNA expression and neuropsychological variables, accounting for non-linear patterns and asymmetric associations. If replicated in more extensive and heterogeneous studies, these findings provide critical insights into the molecular basis governing the natural history of AD, potential personalized and non-invasive diagnosis, prognosis, follow-up, and potential targets for future therapies.
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Affiliation(s)
- Ernesto Barceló
- Instituto Colombiano de Neuropedagogía, Barranquilla 080020, Colombia;
- Department of Health Sciences, Universidad de La Costa, Barranquilla 080002, Colombia
- Grupo Internacional de Investigación Neuro-Conductual (GIINCO), Universidad de La Costa, Barranquilla 080002, Colombia
| | - María I. Mosquera-Heredia
- Department of Medicine, Universidad del Norte, Barranquilla 081007, Colombia (O.M.V.); (L.C.M.); (P.G.-G.)
| | - Oscar M. Vidal
- Department of Medicine, Universidad del Norte, Barranquilla 081007, Colombia (O.M.V.); (L.C.M.); (P.G.-G.)
| | - Daniel A. Bolívar
- Department of Industrial Engineering, Universidad del Norte, Barranquilla 081007, Colombia
| | - Ricardo Allegri
- Institute for Neurological Research FLENI, Montañeses 2325, Buenos Aires C1428AQK, Argentina;
| | - Luis C. Morales
- Department of Medicine, Universidad del Norte, Barranquilla 081007, Colombia (O.M.V.); (L.C.M.); (P.G.-G.)
| | - Carlos Silvera-Redondo
- Department of Medicine, Universidad del Norte, Barranquilla 081007, Colombia (O.M.V.); (L.C.M.); (P.G.-G.)
| | - Mauricio Arcos-Burgos
- Grupo de Investigación en Psiquiatría (GIPSI), Departamento de Psiquiatría, Instituto de Investigaciones Médicas, Facultad de Medicina, Universidad de Antioquia, Medellin 050010, Colombia;
| | - Pilar Garavito-Galofre
- Department of Medicine, Universidad del Norte, Barranquilla 081007, Colombia (O.M.V.); (L.C.M.); (P.G.-G.)
| | - Jorge I. Vélez
- Department of Industrial Engineering, Universidad del Norte, Barranquilla 081007, Colombia
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Baumgärtel K, Broadbent NJ, Su H, Masatsugu B, Maruyama KP, Johnson RW, Green AL, Hornberger DK, Petroski R, Scott R, Peters M. Longevity, enhanced memory, and altered density of dendritic spines in hippocampal CA3 and dentate gyrus after hemizygous deletion of Pde2a in mice. Neuropsychopharmacology 2025; 50:808-817. [PMID: 39604498 PMCID: PMC11914214 DOI: 10.1038/s41386-024-02031-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 11/12/2024] [Accepted: 11/13/2024] [Indexed: 11/29/2024]
Abstract
Studies using acute or subchronic pharmacological inhibition of phosphodiesterase 2 A (PDE2A) have led to its proposal as a target for treatment of cognitive deficits associated with neuropsychiatric and neurodegenerative disease. However, the impact of continuous inhibition of PDE2A on memory is unknown. Moreover, the neuroanatomical regions mediating memory enhancement have not been categorically identified. To address these open questions, we studied knockout mice and hippocampus restricted manipulations. Pde2a heterozygous knockout mice are viable with no gross histological abnormalities. The mice exhibit enhanced spatial and object recognition memory that is independent of anxiolytic effects and is paralleled by increased density of dendritic mushroom and thin spines in hippocampal CA3 and dentate gyrus in adult mice. In CA1, subtle alterations in spine density were seen, while theta-burst LTP and paired-pulse facilitation were normal. Spatial memory enhancement persists in aged Pde2a heterozygous knockout mice, and to our surprise these mice live significantly longer than wild-type littermate controls. In summary, we provide evidence that life-long reduction of PDE2A expression promotes spine formation and maturation, exerts beneficial effects on memory, and increases lifespan.
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Affiliation(s)
- Karsten Baumgärtel
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
- Amplio Consulting LLC5284 Dawes St, San Diego, CA, 92109, USA
| | - Nicola J Broadbent
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Hailing Su
- Neurophysiology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Brittany Masatsugu
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Karly P Maruyama
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Robert W Johnson
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Andrea L Green
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Diana K Hornberger
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Robert Petroski
- Neurophysiology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Roderick Scott
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA
| | - Marco Peters
- Target Discovery & Behavioral Pharmacology, Dart Neuroscience, LLC, 12278 Scripps Summit Drive, San Diego, CA, 92131, USA.
- Center for the Neurobiology of Learning and Memory, University of California Irvine, Qureshey Research Laboratory, Irvine, CA, 92697, USA.
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Bardoni B, Gwizdek C, Maurin T. How close are we to a cAMP- and cGMP-theory-based pharmacological therapy for fragile X syndrome? Cell Rep Med 2025; 6:101972. [PMID: 39970871 PMCID: PMC11866550 DOI: 10.1016/j.xcrm.2025.101972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 01/20/2025] [Accepted: 01/22/2025] [Indexed: 02/21/2025]
Abstract
Recent advances in targeting cAMP and cGMP pathways offer hope for treating fragile X syndrome, a leading cause of inherited intellectual disability. PDE4 and PDE2 inhibitors have shown promise in animal models, improving memory, social behavior, and cognitive function. Clinical trials are underway, raising optimism for future therapies.
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Affiliation(s)
- Barbara Bardoni
- Inserm U1323CNRS UMR7275, Institut de Pharmacologie Moléculaire et Cellulaire, 06560 Valbonne, France.
| | - Carole Gwizdek
- Inserm U1323CNRS UMR7275, Institut de Pharmacologie Moléculaire et Cellulaire, 06560 Valbonne, France
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do Rêgo AGDO, D'Amico F, D'Angelo V, Cardarelli S, Cutuli D, Decandia D, Landolfo E, Petrosini L, Pellegrini M, D'Amelio M, Mercuri NB, Giorgi M, Sancesario G. Haploinsufficiency of PDE2A causes in mice increased exploratory behavior associated with upregulation of neural nitric oxide synthase in the striatum. Neurobiol Dis 2025; 205:106781. [PMID: 39733958 DOI: 10.1016/j.nbd.2024.106781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Revised: 12/21/2024] [Accepted: 12/21/2024] [Indexed: 12/31/2024] Open
Abstract
Phosphodiesterase 2 A (PDE2A) function is stimulated by cGMP to catabolize cAMP. However, neurological and neurochemical effects of PDE2A deficiency are poorly understood. To address this gap, we studied behavioral characteristics and cerebral morpho-chemical changes of adult male heterozygous C57BL/6-PDE2A+/- (HET), and wild type C57BL/6-PDE2A+/+ (WT) mice. Behavioral functions of mice were evaluated by a wide test battery. HET mice exhibited greater tendency to explore novel environments in comparison to WT mice, but spatial working memory, anxiety, and sociability were similar in adult HET and WT mice. In HET mice, PDE2A mRNA, PDE2A protein expression, and cGMP hydrolyzing enzymatic activity were consistently reduced by about 50 %. Consequently, the cyclic nucleotide levels were significantly increased in HET mice, but unexpectedly the mean percentage variation was higher for cGMP equal to 153.23 %, and lower for cAMP equal to 16.41 %. Therefore, to try to explain the preponderant increase of cGMP to cAMP we evaluated other PDE enzymes functionally related to PDE2A. Surprisingly, results were quite contradictory: in HET mice protein levels of the other dual-specificity enzyme PDE3A and PDE10A were reduced, whereas the expressions of PDE5A and PDE9A that selectively hydrolyze cGMP were increased. Therefore, we investigated the involvement of neuronal nitric oxide synthase (nNOS) expression, as determinant of a possible increased synthesis of NO/cGMP signaling. Interestingly, in HET mice the expression level of brain nNOS, measured by western blot and immune-histochemistry was significantly increased, particularly in interneurons from the striatum. In conclusion, the deficiency of PDE2A could be compensated in the striatum by upregulating nNOS/NO/cGMP pathway, which in turn likely upregulates PDE2A-dependent cAMP hydrolysis. The neuroanatomical correlation between striatal nNOS upregulation and the behavioral phenotype of increased exploratory behavior in HET mice is advanced.
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Affiliation(s)
| | - Francesca D'Amico
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University, 00185 Rome, Italy
| | - Vincenza D'Angelo
- Department of Systems Medicine, Tor Vergata University, 00133 Rome, Italy
| | - Silvia Cardarelli
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University, 00185 Rome, Italy
| | - Debora Cutuli
- IRCCS Santa Lucia Foundation, 00179 Rome, Italy; Department of Psychology, Sapienza University, 00185 Rome, Italy
| | - Davide Decandia
- IRCCS Santa Lucia Foundation, 00179 Rome, Italy; Department of Psychology, Sapienza University, 00185 Rome, Italy
| | | | | | - Manuela Pellegrini
- Institute of Biochemistry and Cell Biology, IBBC-CNR, 00015 Monterotondo Scalo, Rome, Italy
| | - Marcello D'Amelio
- IRCCS Santa Lucia Foundation, 00179 Rome, Italy; Department of Medicine, Campus Biomedico University, 00128 Rome, Italy
| | - Nicola Biagio Mercuri
- Department of Systems Medicine, Tor Vergata University, 00133 Rome, Italy; IRCCS Santa Lucia Foundation, 00179 Rome, Italy
| | - Mauro Giorgi
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University, 00185 Rome, Italy.
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MOON HAEUN, DU JINHONG, LEI JING, ROEDER KATHRYN. AUGMENTED DOUBLY ROBUST POST-IMPUTATION INFERENCE FOR PROTEOMIC DATA. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.03.23.586387. [PMID: 39868108 PMCID: PMC11761724 DOI: 10.1101/2024.03.23.586387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 01/28/2025]
Abstract
Quantitative measurements produced by mass spectrometry proteomics experiments offer a direct way to explore the role of proteins in molecular mechanisms. However, analysis of such data is challenging due to the large proportion of missing values. A common strategy to address this issue is to utilize an imputed dataset, which often introduces systematic bias into downstream analyses if the imputation errors are ignored. In this paper, we propose a statistical framework inspired by doubly robust estimators that offers valid and efficient inference for proteomic data. Our framework combines powerful machine learning tools, such as variational autoencoders, to augment the imputation quality with high-dimensional peptide data, and a parametric model to estimate the propensity score for debiasing imputed outcomes. Our estimator is compatible with the double machine learning framework and has provable properties. Simulation studies verify its empirical superiority over other existing procedures. In application to both single-cell proteomic data and bulk-cell Alzheimer's Disease data our method utilizes the imputed data to gain additional, meaningful discoveries and yet maintains good control of false positives.
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Affiliation(s)
- HAEUN MOON
- Department of Statistics, Seoul National University
| | - JIN-HONG DU
- Department of Statistics and Data Science, Carnegie Mellon University
| | - JING LEI
- Department of Statistics and Data Science, Carnegie Mellon University
| | - KATHRYN ROEDER
- Department of Statistics and Data Science, Carnegie Mellon University
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