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Monsalve-Mercado MM, Miller KD. The geometry of the neural state space of decisions. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.01.24.634806. [PMID: 39896602 PMCID: PMC11785246 DOI: 10.1101/2025.01.24.634806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 02/04/2025]
Abstract
How do populations of neurons collectively encode and process information during cognitive tasks? We analyze high-yield population recordings from the macaque lateral intraparietal area (LIP) during a reaction-time random-dot-motion direction-discrimination task. We find that the trajectories of neural population activity patterns during single decisions lie within a curved two-dimensional manifold. The reaction time of trajectories systematically varies along one dimension, such that slow and fast decisions trace distinct activity patterns. Trajectories transition from a deliberation stage, in which they are noisy and remain similar between the choices, to a commitment stage, in which they are far less noisy and diverge sharply for the different choices. The deliberation phase is pronounced for slower decisions and gradually diminishes as reaction time decreases. A mechanistic circuit model provides an explanation for the observed properties, and suggests the transition between stages represents a transition from more sensory-driven to more circuit-driven dynamics. It yields two striking predictions we verify in the data. First, whether neurons are more choice selective for slow or fast trials varies systematically with the retinotopic location of their response fields. Second, the slower the trial, the more saccades undershoot the choice target. The results highlight the roles of distributed and dynamic activity patterns and intrinsic circuit dynamics in the population implementation of a cognitive task.
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Affiliation(s)
- Mauro M. Monsalve-Mercado
- Center for Theoretical Neuroscience and Kavli Institute for Brain Science, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY
| | - Kenneth D. Miller
- Center for Theoretical Neuroscience and Kavli Institute for Brain Science, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY
- Dept. of Neuroscience and Swartz Program in Theoretical Neuroscience, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York
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2
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Kim CM, Chow CC, Averbeck BB. Neural dynamics of reversal learning in the prefrontal cortex and recurrent neural networks. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.09.14.613033. [PMID: 39372802 PMCID: PMC11451584 DOI: 10.1101/2024.09.14.613033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/08/2024]
Abstract
In probabilistic reversal learning, the choice option yielding reward with higher probability switches at a random trial. To perform optimally in this task, one has to accumulate evidence across trials to infer the probability that a reversal has occurred. We investigated how this reversal probability is represented in cortical neurons by analyzing the neural activity in the prefrontal cortex of monkeys and recurrent neural networks trained on the task. We found that in a neural subspace encoding reversal probability, its activity represented integration of reward outcomes as in a line attractor model. The reversal probability activity at the start of a trial was stationary, stable and consistent with the attractor dynamics. However, during the trial, the activity was associated with task-related behavior and became non-stationary, thus deviating from the line attractor. Fitting a predictive model to neural data showed that the stationary state at the trial start serves as an initial condition for launching the non-stationary activity. This suggested an extension of the line attractor model with behavior-induced non-stationary dynamics. The non-stationary trajectories were separable indicating that they can represent distinct probabilistic values. Perturbing the reversal probability activity in the recurrent neural networks biased choice outcomes demonstrating its functional significance. In sum, our results show that cortical networks encode reversal probability in stable stationary state at the start of a trial and utilize it to initiate non-stationary dynamics that accommodates task-related behavior while maintaining the reversal information.
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3
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Talluri BC, Nienborg H. Tracking the evolution of a single choice. eLife 2024; 13:e103059. [PMID: 39429097 PMCID: PMC11493403 DOI: 10.7554/elife.103059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2024] Open
Abstract
Measuring the activity of hundreds of neurons in macaque brains simultaneously provides further evidence that drift-diffusion dynamics underlie how decisions are made in the brain.
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Affiliation(s)
- Bharath Chandra Talluri
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of HealthBethesdaUnited States
| | - Hendrikje Nienborg
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of HealthBethesdaUnited States
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4
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Bukwich M, Campbell MG, Zoltowski D, Kingsbury L, Tomov MS, Stern J, Kim HR, Drugowitsch J, Linderman SW, Uchida N. Competitive integration of time and reward explains value-sensitive foraging decisions and frontal cortex ramping dynamics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.09.05.556267. [PMID: 37732217 PMCID: PMC10508756 DOI: 10.1101/2023.09.05.556267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/22/2023]
Abstract
Patch foraging presents a ubiquitous decision-making process in which animals decide when to abandon a resource patch of diminishing value to pursue an alternative. We developed a virtual foraging task in which mouse behavior varied systematically with patch value. Mouse behavior could be explained by a model integrating time and rewards antagonistically, scaled by a latent patience state. The model accounted for deviations from predictions of optimal foraging theory. Neural recordings throughout frontal areas revealed encoding of decision variables from the integrator model, most robustly in frontal cortex. Regression modeling followed by unsupervised clustering identified a subset of ramping neurons. These neurons' firing rates ramped up gradually (up to tens of seconds), were inhibited by rewards, and were better described as a continuous ramp than a discrete stepping process. Together, these results identify integration via frontal cortex ramping dynamics as a candidate mechanism for solving patch foraging problems.
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Affiliation(s)
- Michael Bukwich
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
- Current address: Sainsbury Wellcome Centre, University College London, London, W1T 4JG, UK
| | - Malcolm G Campbell
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
| | - David Zoltowski
- Department of Statistics, Stanford University, Stanford, CA, 94305
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305
| | - Lyle Kingsbury
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
| | - Momchil S Tomov
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
- Current address: Motional AD LLC, Boston, MA 02210
| | - Joshua Stern
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
| | - HyungGoo R Kim
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
- Center for Neuroscience Imaging Research, Institute for Basic Science, Suwon 16419, Republic of Korea
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon 16419, Republic of Korea
| | - Jan Drugowitsch
- Department of Neurobiology, Harvard Medical School, Boston, MA, 02115
| | - Scott W Linderman
- Department of Statistics, Stanford University, Stanford, CA, 94305
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305
| | - Naoshige Uchida
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, 02138
- Center for Brain Science, Harvard University, Cambridge, MA, 02138
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5
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Luo TZ, Kim TD, Gupta D, Bondy AG, Kopec CD, Elliot VA, DePasquale B, Brody CD. Transitions in dynamical regime and neural mode underlie perceptual decision-making. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.15.562427. [PMID: 37904994 PMCID: PMC10614809 DOI: 10.1101/2023.10.15.562427] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Perceptual decision-making is the process by which an animal uses sensory stimuli to choose an action or mental proposition. This process is thought to be mediated by neurons organized as attractor networks 1,2 . However, whether attractor dynamics underlie decision behavior and the complex neuronal responses remains unclear. Here we use an unsupervised, deep learning-based method to discover decision-related dynamics from the simultaneous activity of neurons in frontal cortex and striatum of rats while they accumulate pulsatile auditory evidence. We found that trajectories evolved along two sequential regimes, the first dominated by sensory inputs, and the second dominated by the autonomous dynamics, with flow in a direction (i.e., "neural mode") largely orthogonal to that in the first regime. We propose that the second regime corresponds to decision commitment. We developed a simplified model that approximates the coupled transition in dynamics and neural mode and allows precise inference, from each trial's neural activity, of a putative internal decision commitment time in that trial. The simplified model captures diverse and complex single-neuron temporal profiles, such as ramping and stepping 3-5 . It also captures trial-averaged curved trajectories 6-8 , and reveals distinctions between brain regions. The putative neurally-inferred commitment times ("nTc") occurred at times broadly distributed across trials, and not time-locked to stimulus onset, offset, or response onset. Nevertheless, when trials were aligned to nTc, behavioral analysis showed that, as predicted by a decision commitment time, sensory evidence before nTc affected the subjects' decision, but evidence after nTc did not. Our results show that the formation of a perceptual choice involves a rapid, coordinated transition in both the dynamical regime and the neural mode of the decision process, and suggest the moment of commitment to be a useful entry point for dissecting mechanisms underlying rapid changes in internal state.
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6
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DePasquale B, Brody CD, Pillow JW. Neural population dynamics underlying evidence accumulation in multiple rat brain regions. eLife 2024; 13:e84955. [PMID: 39162374 PMCID: PMC12005723 DOI: 10.7554/elife.84955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 08/07/2024] [Indexed: 08/21/2024] Open
Abstract
Accumulating evidence to make decisions is a core cognitive function. Previous studies have tended to estimate accumulation using either neural or behavioral data alone. Here, we develop a unified framework for modeling stimulus-driven behavior and multi-neuron activity simultaneously. We applied our method to choices and neural recordings from three rat brain regions-the posterior parietal cortex (PPC), the frontal orienting fields (FOF), and the anterior-dorsal striatum (ADS)-while subjects performed a pulse-based accumulation task. Each region was best described by a distinct accumulation model, which all differed from the model that best described the animal's choices. FOF activity was consistent with an accumulator where early evidence was favored while the ADS reflected near perfect accumulation. Neural responses within an accumulation framework unveiled a distinct association between each brain region and choice. Choices were better predicted from all regions using a comprehensive, accumulation-based framework and different brain regions were found to differentially reflect choice-related accumulation signals: FOF and ADS both reflected choice but ADS showed more instances of decision vacillation. Previous studies relating neural data to behaviorally inferred accumulation dynamics have implicitly assumed that individual brain regions reflect the whole-animal level accumulator. Our results suggest that different brain regions represent accumulated evidence in dramatically different ways and that accumulation at the whole-animal level may be constructed from a variety of neural-level accumulators.
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Affiliation(s)
- Brian DePasquale
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Howard Hughes Medical Institute, Princeton UniversityPrincetonUnited States
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Department of Psychology, Princeton UniversityPrincetonUnited States
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7
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Groh JM, Schmehl MN, Caruso VC, Tokdar ST. Signal switching may enhance processing power of the brain. Trends Cogn Sci 2024; 28:600-613. [PMID: 38763804 PMCID: PMC11793079 DOI: 10.1016/j.tics.2024.04.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 04/17/2024] [Accepted: 04/21/2024] [Indexed: 05/21/2024]
Abstract
Our ability to perceive multiple objects is mysterious. Sensory neurons are broadly tuned, producing potential overlap in the populations of neurons activated by each object in a scene. This overlap raises questions about how distinct information is retained about each item. We present a novel signal switching theory of neural representation, which posits that neural signals may interleave representations of individual items across time. Evidence for this theory comes from new statistical tools that overcome the limitations inherent to standard time-and-trial-pooled assessments of neural signals. Our theory has implications for diverse domains of neuroscience, including attention, figure binding/scene segregation, oscillations, and divisive normalization. The general concept of switching between functions could also lend explanatory power to theories of grounded cognition.
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Affiliation(s)
- Jennifer M Groh
- Department of Psychology and Neuroscience, Duke University, Durham, NC, 27705, USA; Department of Neurobiology, Duke University, Durham, NC, 27705, USA; Department of Biomedical Engineering, Duke University, Durham, NC, 27705, USA; Department of Computer Science, Duke University, Durham, NC, 27705, USA; Center for Cognitive Neuroscience, Duke University, Durham, NC, 27705, USA; Duke Institute for Brain Sciences, Duke University, Durham, NC, 27705, USA.
| | - Meredith N Schmehl
- Department of Neurobiology, Duke University, Durham, NC, 27705, USA; Center for Cognitive Neuroscience, Duke University, Durham, NC, 27705, USA; Duke Institute for Brain Sciences, Duke University, Durham, NC, 27705, USA
| | - Valeria C Caruso
- Department of Psychiatry, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Surya T Tokdar
- Department of Statistical Science, Duke University, Durham, NC, 27705, USA
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8
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Imani E, Radkani S, Hashemi A, Harati A, Pourreza H, Moazami Goudarzi M. Distributed Coding of Evidence Accumulation across the Mouse Brain Using Microcircuits with a Diversity of Timescales. eNeuro 2023; 10:ENEURO.0282-23.2023. [PMID: 37863657 PMCID: PMC10626503 DOI: 10.1523/eneuro.0282-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Revised: 09/11/2023] [Accepted: 09/25/2023] [Indexed: 10/22/2023] Open
Abstract
The gradual accumulation of noisy evidence for or against options is the main step in the perceptual decision-making process. Using brain-wide electrophysiological recording in mice (Steinmetz et al., 2019), we examined neural correlates of evidence accumulation across brain areas. We demonstrated that the neurons with drift-diffusion model (DDM)-like firing rate activity (i.e., evidence-sensitive ramping firing rate) were distributed across the brain. Exploring the underlying neural mechanism of evidence accumulation for the DDM-like neurons revealed different accumulation mechanisms (i.e., single and race) both within and across the brain areas. Our findings support the hypothesis that evidence accumulation is happening through multiple integration mechanisms in the brain. We further explored the timescale of the integration process in the single and race accumulator models. The results demonstrated that the accumulator microcircuits within each brain area had distinct properties in terms of their integration timescale, which were organized hierarchically across the brain. These findings support the existence of evidence accumulation over multiple timescales. Besides the variability of integration timescale across the brain, a heterogeneity of timescales was observed within each brain area as well. We demonstrated that this variability reflected the diversity of microcircuit parameters, such that accumulators with longer integration timescales had higher recurrent excitation strength.
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Affiliation(s)
- Elaheh Imani
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
| | - Setayesh Radkani
- Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
| | | | - Ahad Harati
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
| | - Hamidreza Pourreza
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
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9
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Genkin M, Shenoy KV, Chandrasekaran C, Engel TA. The dynamics and geometry of choice in premotor cortex. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.22.550183. [PMID: 37546748 PMCID: PMC10401920 DOI: 10.1101/2023.07.22.550183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Abstract
The brain represents sensory variables in the coordinated activity of neural populations, in which tuning curves of single neurons define the geometry of the population code. Whether the same coding principle holds for dynamic cognitive variables remains unknown because internal cognitive processes unfold with a unique time course on single trials observed only in the irregular spiking of heterogeneous neural populations. Here we show the existence of such a population code for the dynamics of choice formation in the primate premotor cortex. We developed an approach to simultaneously infer population dynamics and tuning functions of single neurons to the population state. Applied to spike data recorded during decision-making, our model revealed that populations of neurons encoded the same dynamic variable predicting choices, and heterogeneous firing rates resulted from the diverse tuning of single neurons to this decision variable. The inferred dynamics indicated an attractor mechanism for decision computation. Our results reveal a common geometric principle for neural encoding of sensory and dynamic cognitive variables.
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Affiliation(s)
| | - Krishna V Shenoy
- Howard Hughes Medical Institute, Stanford University, Stanford, CA
- Department of Electrical Engineering, Stanford University, Stanford, CA
| | - Chandramouli Chandrasekaran
- Department of Anatomy & Neurobiology, Boston University, Boston, MA
- Department of Psychological and Brain Sciences, Boston University, Boston, MA
- Center for Systems Neuroscience, Boston University, Boston, MA
| | - Tatiana A Engel
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ
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10
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Zhu RJB, Wei XX. Unsupervised approach to decomposing neural tuning variability. Nat Commun 2023; 14:2298. [PMID: 37085524 PMCID: PMC10121715 DOI: 10.1038/s41467-023-37982-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 04/07/2023] [Indexed: 04/23/2023] Open
Abstract
Neural representation is often described by the tuning curves of individual neurons with respect to certain stimulus variables. Despite this tradition, it has become increasingly clear that neural tuning can vary substantially in accordance with a collection of internal and external factors. A challenge we are facing is the lack of appropriate methods to accurately capture the moment-to-moment tuning variability directly from the noisy neural responses. Here we introduce an unsupervised statistical approach, Poisson functional principal component analysis (Pf-PCA), which identifies different sources of systematic tuning fluctuations, moreover encompassing several current models (e.g.,multiplicative gain models) as special cases. Applying this method to neural data recorded from macaque primary visual cortex- a paradigmatic case for which the tuning curve approach has been scientifically essential- we discovered a simple relationship governing the variability of orientation tuning, which unifies different types of gain changes proposed previously. By decomposing the neural tuning variability into interpretable components, our method enables discovery of unexpected structure of the neural code, capturing the influence of the external stimulus drive and internal states simultaneously.
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Affiliation(s)
- Rong J B Zhu
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China.
- MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, and MOE Frontiers Center for Brain Science, Shanghai, China.
| | - Xue-Xin Wei
- Department of Neuroscience, The University of Texas at Austin, Austin, USA.
- Department of Psychology, The University of Texas at Austin, Austin, USA.
- Center for Perceptual Systems, The University of Texas at Austin, Austin, USA.
- Center for Theoretical and Computational Neuroscience, The University of Texas at Austin, Austin, USA.
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11
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Latimer KW, Freedman DJ. Low-dimensional encoding of decisions in parietal cortex reflects long-term training history. Nat Commun 2023; 14:1010. [PMID: 36823109 PMCID: PMC9950136 DOI: 10.1038/s41467-023-36554-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 02/07/2023] [Indexed: 02/25/2023] Open
Abstract
Neurons in parietal cortex exhibit task-related activity during decision-making tasks. However, it remains unclear how long-term training to perform different tasks over months or even years shapes neural computations and representations. We examine lateral intraparietal area (LIP) responses during a visual motion delayed-match-to-category task. We consider two pairs of male macaque monkeys with different training histories: one trained only on the categorization task, and another first trained to perform fine motion-direction discrimination (i.e., pretrained). We introduce a novel analytical approach-generalized multilinear models-to quantify low-dimensional, task-relevant components in population activity. During the categorization task, we found stronger cosine-like motion-direction tuning in the pretrained monkeys than in the category-only monkeys, and that the pretrained monkeys' performance depended more heavily on fine discrimination between sample and test stimuli. These results suggest that sensory representations in LIP depend on the sequence of tasks that the animals have learned, underscoring the importance of considering training history in studies with complex behavioral tasks.
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Affiliation(s)
- Kenneth W Latimer
- Department of Neurobiology, University of Chicago, Chicago, IL, USA.
| | - David J Freedman
- Department of Neurobiology, University of Chicago, Chicago, IL, USA
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12
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Masís J, Chapman T, Rhee JY, Cox DD, Saxe AM. Strategically managing learning during perceptual decision making. eLife 2023; 12:e64978. [PMID: 36786427 PMCID: PMC9928425 DOI: 10.7554/elife.64978] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 01/15/2023] [Indexed: 02/15/2023] Open
Abstract
Making optimal decisions in the face of noise requires balancing short-term speed and accuracy. But a theory of optimality should account for the fact that short-term speed can influence long-term accuracy through learning. Here, we demonstrate that long-term learning is an important dynamical dimension of the speed-accuracy trade-off. We study learning trajectories in rats and formally characterize these dynamics in a theory expressed as both a recurrent neural network and an analytical extension of the drift-diffusion model that learns over time. The model reveals that choosing suboptimal response times to learn faster sacrifices immediate reward, but can lead to greater total reward. We empirically verify predictions of the theory, including a relationship between stimulus exposure and learning speed, and a modulation of reaction time by future learning prospects. We find that rats' strategies approximately maximize total reward over the full learning epoch, suggesting cognitive control over the learning process.
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Affiliation(s)
- Javier Masís
- Department of Molecular and Cellular Biology, Harvard UniversityCambridgeUnited States
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Travis Chapman
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Juliana Y Rhee
- Department of Molecular and Cellular Biology, Harvard UniversityCambridgeUnited States
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - David D Cox
- Department of Molecular and Cellular Biology, Harvard UniversityCambridgeUnited States
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Andrew M Saxe
- Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
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13
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Lee JH, Tsunada J, Vijayan S, Cohen YE. Cortical circuit-based lossless neural integrator for perceptual decision-making: A computational modeling study. Front Comput Neurosci 2022; 16:979830. [PMID: 36405782 PMCID: PMC9669970 DOI: 10.3389/fncom.2022.979830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 10/17/2022] [Indexed: 01/05/2025] Open
Abstract
The intrinsic uncertainty of sensory information (i.e., evidence) does not necessarily deter an observer from making a reliable decision. Indeed, uncertainty can be reduced by integrating (accumulating) incoming sensory evidence. It is widely thought that this accumulation is instantiated via recurrent rate-code neural networks. Yet, these networks do not fully explain important aspects of perceptual decision-making, such as a subject's ability to retain accumulated evidence during temporal gaps in the sensory evidence. Here, we utilized computational models to show that cortical circuits can switch flexibly between "retention" and "integration" modes during perceptual decision-making. Further, we found that, depending on how the sensory evidence was readout, we could simulate "stepping" and "ramping" activity patterns, which may be analogous to those seen in different studies of decision-making in the primate parietal cortex. This finding may reconcile these previous empirical studies because it suggests these two activity patterns emerge from the same mechanism.
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Affiliation(s)
- Jung Hoon Lee
- Allen Institute for Brain Science, Seattle, WA, United States
| | - Joji Tsunada
- Department of Otorhinolaryngology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, United States
| | - Sujith Vijayan
- School of Neuroscience, Virginia Tech, Blacksburg, VA, United States
| | - Yale E Cohen
- Department of Otorhinolaryngology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, United States
- Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, United States
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, United States
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14
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Yin B, Shi Z, Wang Y, Meck WH. Oscillation/Coincidence-Detection Models of Reward-Related Timing in Corticostriatal Circuits. TIMING & TIME PERCEPTION 2022. [DOI: 10.1163/22134468-bja10057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Abstract
The major tenets of beat-frequency/coincidence-detection models of reward-related timing are reviewed in light of recent behavioral and neurobiological findings. This includes the emphasis on a core timing network embedded in the motor system that is comprised of a corticothalamic-basal ganglia circuit. Therein, a central hub provides timing pulses (i.e., predictive signals) to the entire brain, including a set of distributed satellite regions in the cerebellum, cortex, amygdala, and hippocampus that are selectively engaged in timing in a manner that is more dependent upon the specific sensory, behavioral, and contextual requirements of the task. Oscillation/coincidence-detection models also emphasize the importance of a tuned ‘perception’ learning and memory system whereby target durations are detected by striatal networks of medium spiny neurons (MSNs) through the coincidental activation of different neural populations, typically utilizing patterns of oscillatory input from the cortex and thalamus or derivations thereof (e.g., population coding) as a time base. The measure of success of beat-frequency/coincidence-detection accounts, such as the Striatal Beat-Frequency model of reward-related timing (SBF), is their ability to accommodate new experimental findings while maintaining their original framework, thereby making testable experimental predictions concerning diagnosis and treatment of issues related to a variety of dopamine-dependent basal ganglia disorders, including Huntington’s and Parkinson’s disease.
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Affiliation(s)
- Bin Yin
- Department of Psychology and Neuroscience, Duke University, Durham, NC 27708, USA
- School of Psychology, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Zhuanghua Shi
- Department of Psychology, Ludwig Maximilian University of Munich, 80802 Munich, Germany
| | - Yaxin Wang
- School of Psychology, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Warren H. Meck
- Department of Psychology and Neuroscience, Duke University, Durham, NC 27708, USA
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15
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Shinn M, Lee D, Murray JD, Seo H. Transient neuronal suppression for exploitation of new sensory evidence. Nat Commun 2022; 13:23. [PMID: 35013222 PMCID: PMC8748884 DOI: 10.1038/s41467-021-27697-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 12/06/2021] [Indexed: 11/29/2022] Open
Abstract
In noisy but stationary environments, decisions should be based on the temporal integration of sequentially sampled evidence. This strategy has been supported by many behavioral studies and is qualitatively consistent with neural activity in multiple brain areas. By contrast, decision-making in the face of non-stationary sensory evidence remains poorly understood. Here, we trained monkeys to identify and respond via saccade to the dominant color of a dynamically refreshed bicolor patch that becomes informative after a variable delay. Animals’ behavioral responses were briefly suppressed after evidence changes, and many neurons in the frontal eye field displayed a corresponding dip in activity at this time, similar to that frequently observed after stimulus onset but sensitive to stimulus strength. Generalized drift-diffusion models revealed consistency of behavior and neural activity with brief suppression of motor output, but not with pausing or resetting of evidence accumulation. These results suggest that momentary arrest of motor preparation is important for dynamic perceptual decision making. While evidence is constantly changing during real-world decisions, little is known about how the brain deals with such changes. Here, the authors show that the brain strategically suppresses motor output via the frontal eye fields in response to stimulus changes.
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Affiliation(s)
- Maxwell Shinn
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT, 06520, USA.,Department of Psychiatry, Yale University, New Haven, CT, 06520, USA
| | - Daeyeol Lee
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD, 21218, USA.,Kavli Discovery Neuroscience Institute, Johns Hopkins University, Baltimore, MD, 21218, USA.,Department of Psychological and Brain Sciences, Johns Hopkins University, Baltimore, MD, 21218, USA.,Department of Neuroscience, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - John D Murray
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT, 06520, USA. .,Department of Psychiatry, Yale University, New Haven, CT, 06520, USA. .,Department of Physics, Yale University, New Haven, CT, 06520, USA. .,Department of Neuroscience, Yale University, New Haven, CT, 06520, USA.
| | - Hyojung Seo
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT, 06520, USA. .,Department of Psychiatry, Yale University, New Haven, CT, 06520, USA. .,Department of Neuroscience, Yale University, New Haven, CT, 06520, USA.
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16
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Gupta A, Bansal R, Alashwal H, Kacar AS, Balci F, Moustafa AA. Neural Substrates of the Drift-Diffusion Model in Brain Disorders. Front Comput Neurosci 2022; 15:678232. [PMID: 35069160 PMCID: PMC8776710 DOI: 10.3389/fncom.2021.678232] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 11/25/2021] [Indexed: 12/01/2022] Open
Abstract
Many studies on the drift-diffusion model (DDM) explain decision-making based on a unified analysis of both accuracy and response times. This review provides an in-depth account of the recent advances in DDM research which ground different DDM parameters on several brain areas, including the cortex and basal ganglia. Furthermore, we discuss the changes in DDM parameters due to structural and functional impairments in several clinical disorders, including Parkinson's disease, Attention Deficit Hyperactivity Disorder (ADHD), Autism Spectrum Disorders, Obsessive-Compulsive Disorder (OCD), and schizophrenia. This review thus uses DDM to provide a theoretical understanding of different brain disorders.
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Affiliation(s)
- Ankur Gupta
- CNRS UMR 5293, Institut des Maladies Neurodégénératives, Université de Bordeaux, Bordeaux, France
| | - Rohini Bansal
- Department of Medical Neurobiology, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Hany Alashwal
- College of Information Technology, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Anil Safak Kacar
- Research Center for Translational Medicine (KUTTAM), Koç University, Istanbul, Turkey
| | - Fuat Balci
- Research Center for Translational Medicine (KUTTAM), Koç University, Istanbul, Turkey
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB, Canada
| | - Ahmed A. Moustafa
- School of Psychology & Marcs Institute for Brain and Behaviour, Western Sydney University, Sydney, NSW, Australia
- School of Psychology, Faculty of Society and Design, Bond University, Robina, QLD, Australia
- Faculty of Health Sciences, Department of Human Anatomy and Physiology, University of Johannesburg, Johannesburg, South Africa
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17
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Hamilos AE, Spedicato G, Hong Y, Sun F, Li Y, Assad J. Slowly evolving dopaminergic activity modulates the moment-to-moment probability of reward-related self-timed movements. eLife 2021; 10:62583. [PMID: 34939925 PMCID: PMC8860451 DOI: 10.7554/elife.62583] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Accepted: 12/21/2021] [Indexed: 11/13/2022] Open
Abstract
Clues from human movement disorders have long suggested that the neurotransmitter dopamine plays a role in motor control, but how the endogenous dopaminergic system influences movement is unknown. Here we examined the relationship between dopaminergic signaling and the timing of reward-related movements in mice. Animals were trained to initiate licking after a self-timed interval following a start-timing cue; reward was delivered in response to movements initiated after a criterion time. The movement time was variable from trial-to-trial, as expected from previous studies. Surprisingly, dopaminergic signals ramped-up over seconds between the start-timing cue and the self-timed movement, with variable dynamics that predicted the movement/reward time on single trials. Steeply rising signals preceded early lick-initiation, whereas slowly rising signals preceded later initiation. Higher baseline signals also predicted earlier self-timed movements. Optogenetic activation of dopamine neurons during self-timing did not trigger immediate movements, but rather caused systematic early-shifting of movement initiation, whereas inhibition caused late-shifting, as if modulating the probability of movement. Consistent with this view, the dynamics of the endogenous dopaminergic signals quantitatively predicted the moment-by-moment probability of movement initiation on single trials. We propose that ramping dopaminergic signals, likely encoding dynamic reward expectation, can modulate the decision of when to move.
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Affiliation(s)
- Allison E Hamilos
- Department of Neurobiology, Harvard Medical School, Boston, United States
| | - Giulia Spedicato
- Department of Neurobiology, Harvard Medical School, Boston, United States
| | - Ye Hong
- Department of Neurobiology, Harvard Medical School, Boston, United States
| | - Fangmiao Sun
- State Key Laboratory of Membrane Biology, Peking University School of Life Science, Beijing, China
| | - Yulong Li
- State Key Laboratory of Membrane Biology, Peiking University School of Life Sciences, Beijing, China
| | - John Assad
- Department of Neurobiology, Harvard Medical School, Boston, United States
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18
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Genkin M, Hughes O, Engel TA. Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories. Nat Commun 2021; 12:5986. [PMID: 34645828 PMCID: PMC8514604 DOI: 10.1038/s41467-021-26202-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 09/22/2021] [Indexed: 11/09/2022] Open
Abstract
Many complex systems operating far from the equilibrium exhibit stochastic dynamics that can be described by a Langevin equation. Inferring Langevin equations from data can reveal how transient dynamics of such systems give rise to their function. However, dynamics are often inaccessible directly and can be only gleaned through a stochastic observation process, which makes the inference challenging. Here we present a non-parametric framework for inferring the Langevin equation, which explicitly models the stochastic observation process and non-stationary latent dynamics. The framework accounts for the non-equilibrium initial and final states of the observed system and for the possibility that the system's dynamics define the duration of observations. Omitting any of these non-stationary components results in incorrect inference, in which erroneous features arise in the dynamics due to non-stationary data distribution. We illustrate the framework using models of neural dynamics underlying decision making in the brain.
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Affiliation(s)
- Mikhail Genkin
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
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19
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Ebitz RB, Hayden BY. The population doctrine in cognitive neuroscience. Neuron 2021; 109:3055-3068. [PMID: 34416170 PMCID: PMC8725976 DOI: 10.1016/j.neuron.2021.07.011] [Citation(s) in RCA: 99] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 07/02/2021] [Accepted: 07/13/2021] [Indexed: 01/08/2023]
Abstract
A major shift is happening within neurophysiology: a population doctrine is drawing level with the single-neuron doctrine that has long dominated the field. Population-level ideas have so far had their greatest impact in motor neuroscience, but they hold great promise for resolving open questions in cognition as well. Here, we codify the population doctrine and survey recent work that leverages this view to specifically probe cognition. Our discussion is organized around five core concepts that provide a foundation for population-level thinking: (1) state spaces, (2) manifolds, (3) coding dimensions, (4) subspaces, and (5) dynamics. The work we review illustrates the progress and promise that population-level thinking holds for cognitive neuroscience-for delivering new insight into attention, working memory, decision-making, executive function, learning, and reward processing.
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Affiliation(s)
- R Becket Ebitz
- Department of Neurosciences, Faculté de médecine, Université de Montréal, Montréal, QC, Canada.
| | - Benjamin Y Hayden
- Department of Neuroscience, Center for Magnetic Resonance Research, and Center for Neuroengineering, University of Minnesota, Minneapolis, MN, USA
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20
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Williams AH, Linderman SW. Statistical neuroscience in the single trial limit. Curr Opin Neurobiol 2021; 70:193-205. [PMID: 34861596 DOI: 10.1016/j.conb.2021.10.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 09/29/2021] [Accepted: 10/27/2021] [Indexed: 11/24/2022]
Abstract
Individual neurons often produce highly variable responses over nominally identical trials, reflecting a mixture of intrinsic 'noise' and systematic changes in the animal's cognitive and behavioral state. Disentangling these sources of variability is of great scientific interest in its own right, but it is also increasingly inescapable as neuroscientists aspire to study more complex and naturalistic animal behaviors. In these settings, behavioral actions never repeat themselves exactly and may rarely do so even approximately. Thus, new statistical methods that extract reliable features of neural activity using few, if any, repeated trials are needed. Accurate statistical modeling in this severely trial-limited regime is challenging, but still possible if simplifying structure in neural data can be exploited. We review recent works that have identified different forms of simplifying structure - including shared gain modulations across neural subpopulations, temporal smoothness in neural firing rates, and correlations in responses across behavioral conditions - and exploited them to reveal novel insights into the trial-by-trial operation of neural circuits.
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Affiliation(s)
- Alex H Williams
- Department of Statistics and Wu Tsai Neurosciences Institute, Stanford University, USA
| | - Scott W Linderman
- Department of Statistics and Wu Tsai Neurosciences Institute, Stanford University, USA.
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21
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Variable Statistical Structure of Neuronal Spike Trains in Monkey Superior Colliculus. J Neurosci 2021; 41:3234-3253. [PMID: 33622775 DOI: 10.1523/jneurosci.1491-20.2021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 01/27/2021] [Accepted: 01/28/2021] [Indexed: 12/22/2022] Open
Abstract
Popular models of decision-making propose that noisy sensory evidence accumulates until reaching a bound. Behavioral evidence as well as trial-averaged ramping of neuronal activity in sensorimotor regions of the brain support this idea. However, averaging activity across trials can mask other processes, such as rapid shifts in decision commitment, calling into question the hypothesis that evidence accumulation is encoded by delay period activity of individual neurons. We mined two sets of data from experiments in four monkeys in which we recorded from superior colliculus neurons during two different decision-making tasks and a delayed saccade task. We applied second-order statistical measures and spike train simulations to determine whether spiking statistics were similar or different in the different tasks and monkeys, despite similar trial-averaged activity across tasks and monkeys. During a motion direction discrimination task, single-trial delay period activity behaved statistically consistent with accumulation. During an orientation detection task, the activity behaved superficially like accumulation, but statistically consistent with stepping. Simulations confirmed both findings. Importantly, during a simple saccade task, with similar trial-averaged activity, neither process explained spiking activity, ruling out interpretations based on differences in attention, reward, or motor planning. These results highlight the need for exploring single-trial spiking dynamics to understand cognitive processing and raise the interesting hypothesis that the superior colliculus participates in different aspects of decision-making depending on task differences.SIGNIFICANCE STATEMENT How are decisions based on sensory information transformed into actions? We report that single-trial neuronal activity dynamics in the superior colliculus of monkeys show differences in decision-making tasks depending on task idiosyncrasies and requirements and despite similar trial-averaged ramping activity. These results highlight the importance of exploring single-trial spiking dynamics to understand cognitive processing and raise the interesting hypothesis that the superior colliculus participates in different aspects of decision-making depending on task requirements.
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22
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Genkin M, Engel TA. Moving beyond generalization to accurate interpretation of flexible models. NAT MACH INTELL 2020; 2:674-683. [DOI: 10.1038/s42256-020-00242-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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23
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Kawabata M, Soma S, Saiki-Ishikawa A, Nonomura S, Yoshida J, Ríos A, Sakai Y, Isomura Y. A spike analysis method for characterizing neurons based on phase locking and scaling to the interval between two behavioral events. J Neurophysiol 2020; 124:1923-1941. [PMID: 33085554 DOI: 10.1152/jn.00200.2020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Standard analysis of neuronal functions assesses the temporal correlation between animal behaviors and neuronal activity by aligning spike trains with the timing of a specific behavioral event, e.g., visual cue. However, spike activity is often involved in information processing dependent on a relative phase between two consecutive events rather than a single event. Nevertheless, less attention has so far been paid to such temporal features of spike activity in relation to two behavioral events. Here, we propose "Phase-Scaling analysis" to simultaneously evaluate the phase locking and scaling to the interval between two events in task-related spike activity of individual neurons. This analysis method can discriminate conceptual "scaled"-type neurons from "nonscaled"-type neurons using an activity variation map that combines phase locking with scaling to the interval. Its robustness was validated by spike simulation using different spike properties. Furthermore, we applied it to analyzing actual spike data from task-related neurons in the primary visual cortex (V1), posterior parietal cortex (PPC), primary motor cortex (M1), and secondary motor cortex (M2) of behaving rats. After hierarchical clustering of all neurons using their activity variation maps, we divided them objectively into four clusters corresponding to nonscaled-type sensory and motor neurons and scaled-type neurons including sustained and ramping activities, etc. Cluster/subcluster compositions for V1 differed from those of PPC, M1, and M2. The V1 neurons showed the fastest functional activities among those areas. Our method was also applicable to determine temporal "forms" and the latency of spike activity changes. These findings demonstrate its utility for characterizing neurons.NEW & NOTEWORTHY Phase-Scaling analysis is a novel technique to unbiasedly characterize the temporal dependency of functional neuron activity on two behavioral events and objectively determine the latency and form of the activity change. This powerful analysis can uncover several classes of latently functioning neurons that have thus far been overlooked, which may participate differently in intermediate processes of a brain function. The Phase-Scaling analysis will yield profound insights into neural mechanisms for processing internal information.
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Affiliation(s)
- Masanori Kawabata
- Department of Physiology and Cell Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.,Graduate School of Brain Sciences, Tamagawa University, Tokyo, Japan
| | - Shogo Soma
- Brain Science Institute, Tamagawa University, Tokyo, Japan.,Department of Molecular Cell Physiology, Kyoto Prefectural University of Medicine, Kyoto, Japan
| | - Akiko Saiki-Ishikawa
- Brain Science Institute, Tamagawa University, Tokyo, Japan.,Department of Neurobiology, Northwestern University, Evanston, Illinois
| | - Satoshi Nonomura
- Department of Physiology and Cell Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.,Brain Science Institute, Tamagawa University, Tokyo, Japan.,Systems Neuroscience Section, Primate Research Institute, Kyoto University, Aichi, Japan
| | - Junichi Yoshida
- Brain Science Institute, Tamagawa University, Tokyo, Japan.,Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, New York
| | - Alain Ríos
- Department of Physiology and Cell Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.,Graduate School of Brain Sciences, Tamagawa University, Tokyo, Japan
| | - Yutaka Sakai
- Graduate School of Brain Sciences, Tamagawa University, Tokyo, Japan.,Brain Science Institute, Tamagawa University, Tokyo, Japan
| | - Yoshikazu Isomura
- Department of Physiology and Cell Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.,Graduate School of Brain Sciences, Tamagawa University, Tokyo, Japan.,Brain Science Institute, Tamagawa University, Tokyo, Japan
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24
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Abstract
Human decisions are based on finite information, which makes them inherently imprecise. But what determines the degree of such imprecision? Here, we develop an efficient coding framework for higher-level cognitive processes in which information is represented by a finite number of discrete samples. We characterize the sampling process that maximizes perceptual accuracy or fitness under the often-adopted assumption that full adaptation to an environmental distribution is possible, and show how the optimal process differs when detailed information about the current contextual distribution is costly. We tested this theory on a numerosity discrimination task, and found that humans efficiently adapt to contextual distributions, but in the way predicted by the model in which people must economize on environmental information. Thus, understanding decision behavior requires that we account for biological restrictions on information coding, challenging the often-adopted assumption of precise prior knowledge in higher-level decision systems.
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Affiliation(s)
- Joseph A Heng
- Department of Health Sciences and Technology, Federal Institute of Technology (ETH)ZurichSwitzerland
| | - Michael Woodford
- Department of Economics, Columbia UniversityNew YorkUnited States
| | - Rafael Polania
- Department of Health Sciences and Technology, Federal Institute of Technology (ETH)ZurichSwitzerland
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25
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Nguyen QA, Rinzel J, Curtu R. Buildup and bistability in auditory streaming as an evidence accumulation process with saturation. PLoS Comput Biol 2020; 16:e1008152. [PMID: 32853256 PMCID: PMC7480857 DOI: 10.1371/journal.pcbi.1008152] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Revised: 09/09/2020] [Accepted: 07/15/2020] [Indexed: 12/23/2022] Open
Abstract
A repeating triplet-sequence ABA- of non-overlapping brief tones, A and B, is a valued paradigm for studying auditory stream formation and the cocktail party problem. The stimulus is "heard" either as a galloping pattern (integration) or as two interleaved streams (segregation); the initial percept is typically integration then followed by spontaneous alternations between segregation and integration, each being dominant for a few seconds. The probability of segregation grows over seconds, from near-zero to a steady value, defining the buildup function, BUF. Its stationary level increases with the difference in tone frequencies, DF, and the BUF rises faster. Percept durations have DF-dependent means and are gamma-like distributed. Behavioral and computational studies usually characterize triplet streaming either during alternations or during buildup. Here, our experimental design and modeling encompass both. We propose a pseudo-neuromechanistic model that incorporates spiking activity in primary auditory cortex, A1, as input and resolves perception along two network-layers downstream of A1. Our model is straightforward and intuitive. It describes the noisy accumulation of evidence against the current percept which generates switches when reaching a threshold. Accumulation can saturate either above or below threshold; if below, the switching dynamics resemble noise-induced transitions from an attractor state. Our model accounts quantitatively for three key features of data: the BUFs, mean durations, and normalized dominance duration distributions, at various DF values. It describes perceptual alternations without competition per se, and underscores that treating triplets in the sequence independently and averaging across trials, as implemented in earlier widely cited studies, is inadequate.
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Affiliation(s)
- Quynh-Anh Nguyen
- Department of Mathematics, The University of Iowa, Iowa City, Iowa, United States of America
| | - John Rinzel
- Center for Neural Science, New York University, New York, New York, United States of America
- Courant Institute of Mathematical Sciences, New York University, New York, New York, United States of America
| | - Rodica Curtu
- Department of Mathematics, The University of Iowa, Iowa City, Iowa, United States of America
- Iowa Neuroscience Institute, Human Brain Research Laboratory, Iowa City, Iowa, United States of America
- * E-mail:
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26
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Emberly E, Seamans JK. Abrupt, Asynchronous Changes in Action Representations by Anterior Cingulate Cortex Neurons during Trial and Error Learning. Cereb Cortex 2020; 30:4336-4345. [PMID: 32239139 DOI: 10.1093/cercor/bhaa019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Revised: 01/09/2020] [Accepted: 01/12/2020] [Indexed: 11/13/2022] Open
Abstract
The ability to act on knowledge about the value of stimuli or actions factors into simple foraging behaviors as well as complex forms of decision-making. In striatal regions, action representations are thought to acquire value through a gradual (reinforcement-learning based) process. It is unclear whether this is also true for anterior cingulate cortex (ACC) where neuronal representations tend to change abruptly. We recorded from ensembles of ACC neurons as rats deduced which of 3 levers was rewarded each day. The rat's lever preferences changed gradually throughout the sessions as they eventually came to focus on the rewarded lever. Most individual neurons changed their responses to both rewarded and nonrewarded lever presses abruptly (<2 trials). These transitions occurred asynchronously across the population but peaked near the point where the rats began to focus on the rewarded lever. Because the individual transitions were asynchronous, the overall change at the population level appeared gradual. Abrupt transitions in action representations of ACC neurons may be part of a mechanism that alters choice strategies as new information is acquired.
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Affiliation(s)
- Eldon Emberly
- Department of Physics, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
| | - Jeremy K Seamans
- Department of Psychiatry, Centre for Brain Health, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
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27
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Ter Wal M, Platonov A, Cardellicchio P, Pelliccia V, LoRusso G, Sartori I, Avanzini P, Orban GA, Tiesinga PHE. Human stereoEEG recordings reveal network dynamics of decision-making in a rule-switching task. Nat Commun 2020; 11:3075. [PMID: 32555174 PMCID: PMC7300004 DOI: 10.1038/s41467-020-16854-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 05/26/2020] [Indexed: 01/17/2023] Open
Abstract
The processing steps that lead up to a decision, i.e., the transformation of sensory evidence into motor output, are not fully understood. Here, we combine stereoEEG recordings from the human cortex, with single-lead and time-resolved decoding, using a wide range of temporal frequencies, to characterize decision processing during a rule-switching task. Our data reveal the contribution of rostral inferior parietal lobule (IPL) regions, in particular PFt, and the parietal opercular regions in decision processing and demonstrate that the network representing the decision is common to both task rules. We reconstruct the sequence in which regions engage in decision processing on single trials, thereby providing a detailed picture of the network dynamics involved in decision-making. The reconstructed timeline suggests that the supramarginal gyrus in IPL links decision regions in prefrontal cortex with premotor regions, where the motor plan for the response is elaborated.
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Affiliation(s)
- Marije Ter Wal
- Department of Neuroinformatics, Donders Institute, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
- School of Psychology, University of Birmingham, Edgbaston, B15 2TT, UK.
| | - Artem Platonov
- Department of Medicine and Surgery, University of Parma, Via Volturno 39E, 43125, Parma, Italy
| | - Pasquale Cardellicchio
- Department of Medicine and Surgery, University of Parma, Via Volturno 39E, 43125, Parma, Italy
| | - Veronica Pelliccia
- Claudio Munari Center for Epilepsy Surgery, Niguarda Hospital, Ospedale Ca'Granda Niguarda, Piazza dell'Ospedale Maggiore, 3, 20162, Milan, Italy
| | - Giorgio LoRusso
- Claudio Munari Center for Epilepsy Surgery, Niguarda Hospital, Ospedale Ca'Granda Niguarda, Piazza dell'Ospedale Maggiore, 3, 20162, Milan, Italy
| | - Ivana Sartori
- Claudio Munari Center for Epilepsy Surgery, Niguarda Hospital, Ospedale Ca'Granda Niguarda, Piazza dell'Ospedale Maggiore, 3, 20162, Milan, Italy
| | - Pietro Avanzini
- Institute of Neuroscience, CNR, via Volturno 39E, 43125, Parma, Italy
| | - Guy A Orban
- Department of Medicine and Surgery, University of Parma, Via Volturno 39E, 43125, Parma, Italy
| | - Paul H E Tiesinga
- Department of Neuroinformatics, Donders Institute, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
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28
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Mysore SP, Kothari NB. Mechanisms of competitive selection: A canonical neural circuit framework. eLife 2020; 9:e51473. [PMID: 32431293 PMCID: PMC7239658 DOI: 10.7554/elife.51473] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 04/02/2020] [Indexed: 01/25/2023] Open
Abstract
Competitive selection, the transformation of multiple competing sensory inputs and internal states into a unitary choice, is a fundamental component of animal behavior. Selection behaviors have been studied under several intersecting umbrellas including decision-making, action selection, perceptual categorization, and attentional selection. Neural correlates of these behaviors and computational models have been investigated extensively. However, specific, identifiable neural circuit mechanisms underlying the implementation of selection remain elusive. Here, we employ a first principles approach to map competitive selection explicitly onto neural circuit elements. We decompose selection into six computational primitives, identify demands that their execution places on neural circuit design, and propose a canonical neural circuit framework. The resulting framework has several links to neural literature, indicating its biological feasibility, and has several common elements with prominent computational models, suggesting its generality. We propose that this framework can help catalyze experimental discovery of the neural circuit underpinnings of competitive selection.
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Affiliation(s)
- Shreesh P Mysore
- Department of Psychological and Brain Sciences, Johns Hopkins UniversityBaltimoreUnited States
- The Solomon H. Snyder Department of Neuroscience, Johns Hopkins UniversityBaltimoreUnited States
| | - Ninad B Kothari
- Department of Psychological and Brain Sciences, Johns Hopkins UniversityBaltimoreUnited States
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29
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Schall JD. Accumulators, Neurons, and Response Time. Trends Neurosci 2019; 42:848-860. [PMID: 31704180 PMCID: PMC6981279 DOI: 10.1016/j.tins.2019.10.001] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Revised: 10/02/2019] [Accepted: 10/02/2019] [Indexed: 12/31/2022]
Abstract
The marriage of cognitive neurophysiology and mathematical psychology to understand decision-making has been exceptionally productive. This interdisciplinary area is based on the proposition that particular neurons or circuits instantiate the accumulation of evidence specified by mathematical models of sequential sampling and stochastic accumulation. This linking proposition has earned widespread endorsement. Here, a brief survey of the history of the proposition precedes a review of multiple conundrums and paradoxes concerning the accuracy, precision, and transparency of that linking proposition. Correctly establishing how abstract models of decision-making are instantiated by particular neural circuits would represent a remarkable accomplishment in mapping mind to brain. Failing would reveal challenging limits for cognitive neuroscience. This is such a vigorous area of research because so much is at stake.
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Affiliation(s)
- Jeffrey D Schall
- Center for Integrative and Cognitive Neuroscience, Vanderbilt Vision Research Center, and Department of Psychology, Vanderbilt University, Nashville, TN 37240, USA.
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Shevinsky CA, Reinagel P. The Interaction Between Elapsed Time and Decision Accuracy Differs Between Humans and Rats. Front Neurosci 2019; 13:1211. [PMID: 31803002 PMCID: PMC6877602 DOI: 10.3389/fnins.2019.01211] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Accepted: 10/28/2019] [Indexed: 12/24/2022] Open
Abstract
A stochastic visual motion discrimination task is widely used to study rapid decision-making in humans and animals. Among trials of the same sensory difficulty within a block of fixed decision strategy, humans and monkeys are widely reported to make more errors in the individual trials with longer reaction times. This finding has posed a challenge for the drift-diffusion model of sensory decision-making, which in its basic form predicts that errors and correct responses should have the same reaction time distributions. We previously reported that rats also violate this model prediction, but in the opposite direction: for rats, motion discrimination accuracy was highest in the trials with the longest reaction times. To rule out task differences as the cause of our divergent finding in rats, the present study tested humans and rats using the same task and analyzed their data identically. We confirmed that rats' accuracy increased with reaction time, whereas humans' accuracy decreased with reaction time in the same task. These results were further verified using a new temporally local analysis method, ruling out that the observed trend was an artifact of non-stationarity in the data of either species. The main effect was found whether the signal strength (motion coherence) was varied in randomly interleaved trials or held constant within a block. The magnitude of the effects increased with motion coherence. These results provide new constraints useful for refining and discriminating among the many alternative mathematical theories of decision-making.
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Affiliation(s)
| | - Pamela Reinagel
- Division of Biological Sciences, University of California, San Diego, La Jolla, CA, United States
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