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For: DePasquale B, Sussillo D, Abbott LF, Churchland MM. The centrality of population-level factors to network computation is demonstrated by a versatile approach for training spiking networks. Neuron 2023;111:631-649.e10. [PMID: 36630961 PMCID: PMC10118067 DOI: 10.1016/j.neuron.2022.12.007] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 06/17/2022] [Accepted: 12/05/2022] [Indexed: 01/12/2023]
Number Cited by Other Article(s)
1
Mattera A, Alfieri V, Granato G, Baldassarre G. Chaotic recurrent neural networks for brain modelling: A review. Neural Netw 2025;184:107079. [PMID: 39756119 DOI: 10.1016/j.neunet.2024.107079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2024] [Revised: 11/25/2024] [Accepted: 12/19/2024] [Indexed: 01/07/2025]
2
Dernoncourt F, Avrillon S, Logtens T, Cattagni T, Farina D, Hug F. Flexible control of motor units: is the multidimensionality of motor unit manifolds a sufficient condition? J Physiol 2025;603:2349-2368. [PMID: 39964831 PMCID: PMC12013786 DOI: 10.1113/jp287857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Accepted: 01/27/2025] [Indexed: 02/20/2025]  Open
3
Perkins SM, Amematsro EA, Cunningham J, Wang Q, Churchland MM. An emerging view of neural geometry in motor cortex supports high-performance decoding. eLife 2025;12:RP89421. [PMID: 39898793 PMCID: PMC11790250 DOI: 10.7554/elife.89421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2025]  Open
4
Schmutz V, Brea J, Gerstner W. Emergent Rate-Based Dynamics in Duplicate-Free Populations of Spiking Neurons. PHYSICAL REVIEW LETTERS 2025;134:018401. [PMID: 39913719 DOI: 10.1103/physrevlett.134.018401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 11/22/2024] [Indexed: 05/07/2025]
5
Serrano-Fernández L, Beirán M, Romo R, Parga N. Representation of a perceptual bias in the prefrontal cortex. Proc Natl Acad Sci U S A 2024;121:e2312831121. [PMID: 39636858 DOI: 10.1073/pnas.2312831121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 11/06/2024] [Indexed: 12/07/2024]  Open
6
Lacal I, Das A, Logiaco L, Molano-Mazón M, Schwaner MJ, Trach JE. Emerging perspectives for the study of the neural basis of motor behaviour. Eur J Neurosci 2024;60:6342-6356. [PMID: 39364639 DOI: 10.1111/ejn.16553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Revised: 09/07/2024] [Accepted: 09/16/2024] [Indexed: 10/05/2024]
7
Mathis MW, Perez Rotondo A, Chang EF, Tolias AS, Mathis A. Decoding the brain: From neural representations to mechanistic models. Cell 2024;187:5814-5832. [PMID: 39423801 PMCID: PMC11637322 DOI: 10.1016/j.cell.2024.08.051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Revised: 07/29/2024] [Accepted: 08/26/2024] [Indexed: 10/21/2024]
8
Wu S, Huang C, Snyder AC, Smith MA, Doiron B, Yu BM. Automated customization of large-scale spiking network models to neuronal population activity. NATURE COMPUTATIONAL SCIENCE 2024;4:690-705. [PMID: 39285002 PMCID: PMC12047676 DOI: 10.1038/s43588-024-00688-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 08/08/2024] [Indexed: 09/22/2024]
9
Colins Rodriguez A, Perich MG, Miller LE, Humphries MD. Motor Cortex Latent Dynamics Encode Spatial and Temporal Arm Movement Parameters Independently. J Neurosci 2024;44:e1777232024. [PMID: 39060178 PMCID: PMC11358606 DOI: 10.1523/jneurosci.1777-23.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 07/12/2024] [Accepted: 07/17/2024] [Indexed: 07/28/2024]  Open
10
Lin Z, Huang H. Spiking mode-based neural networks. Phys Rev E 2024;110:024306. [PMID: 39295018 DOI: 10.1103/physreve.110.024306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 07/22/2024] [Indexed: 09/21/2024]
11
Bayones L, Zainos A, Alvarez M, Romo R, Franci A, Rossi-Pool R. Orthogonality of sensory and contextual categorical dynamics embedded in a continuum of responses from the second somatosensory cortex. Proc Natl Acad Sci U S A 2024;121:e2316765121. [PMID: 38990946 PMCID: PMC11260089 DOI: 10.1073/pnas.2316765121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 06/12/2024] [Indexed: 07/13/2024]  Open
12
Jiang H, Bu X, Sui X, Tang H, Pan X, Chen Y. Spike Neural Network of Motor Cortex Model for Arm Reaching Control. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2024;2024:1-4. [PMID: 40039622 DOI: 10.1109/embc53108.2024.10781802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
13
Rodriguez AC, Perich MG, Miller L, Humphries MD. Motor cortex latent dynamics encode spatial and temporal arm movement parameters independently. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.05.26.542452. [PMID: 37292834 PMCID: PMC10246015 DOI: 10.1101/2023.05.26.542452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
14
Podlaski WF, Machens CK. Approximating Nonlinear Functions With Latent Boundaries in Low-Rank Excitatory-Inhibitory Spiking Networks. Neural Comput 2024;36:803-857. [PMID: 38658028 DOI: 10.1162/neco_a_01658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 01/02/2024] [Indexed: 04/26/2024]
15
Churchland MM, Shenoy KV. Preparatory activity and the expansive null-space. Nat Rev Neurosci 2024;25:213-236. [PMID: 38443626 DOI: 10.1038/s41583-024-00796-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/26/2024] [Indexed: 03/07/2024]
16
Zhang X, Dou Z, Kim SH, Upadhyay G, Havert D, Kang S, Kazemi K, Huang K, Aydin O, Huang R, Rahman S, Ellis‐Mohr A, Noblet HA, Lim KH, Chung HJ, Gritton HJ, Saif MTA, Kong HJ, Beggs JM, Gazzola M. Mind In Vitro Platforms: Versatile, Scalable, Robust, and Open Solutions to Interfacing with Living Neurons. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2306826. [PMID: 38161217 PMCID: PMC10953569 DOI: 10.1002/advs.202306826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/12/2023] [Indexed: 01/03/2024]
17
Maslennikov O, Perc M, Nekorkin V. Topological features of spike trains in recurrent spiking neural networks that are trained to generate spatiotemporal patterns. Front Comput Neurosci 2024;18:1363514. [PMID: 38463243 PMCID: PMC10920356 DOI: 10.3389/fncom.2024.1363514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Accepted: 02/06/2024] [Indexed: 03/12/2024]  Open
18
Wheeler DW, Kopsick JD, Sutton N, Tecuatl C, Komendantov AO, Nadella K, Ascoli GA. Hippocampome.org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. eLife 2024;12:RP90597. [PMID: 38345923 PMCID: PMC10942544 DOI: 10.7554/elife.90597] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]  Open
19
Zimnik AJ, Cora Ames K, An X, Driscoll L, Lara AH, Russo AA, Susoy V, Cunningham JP, Paninski L, Churchland MM, Glaser JI. Identifying Interpretable Latent Factors with Sparse Component Analysis. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.05.578988. [PMID: 38370650 PMCID: PMC10871230 DOI: 10.1101/2024.02.05.578988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
20
Gort J. Emergence of Universal Computations Through Neural Manifold Dynamics. Neural Comput 2024;36:227-270. [PMID: 38101328 DOI: 10.1162/neco_a_01631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 09/05/2023] [Indexed: 12/17/2023]
21
Wheeler DW, Kopsick JD, Sutton N, Tecuatl C, Komendantov AO, Nadella K, Ascoli GA. Hippocampome.org v2.0: a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.05.12.540597. [PMID: 37425693 PMCID: PMC10327012 DOI: 10.1101/2023.05.12.540597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/11/2023]
22
Zhai S, Cui Q, Simmons DV, Surmeier DJ. Distributed dopaminergic signaling in the basal ganglia and its relationship to motor disability in Parkinson's disease. Curr Opin Neurobiol 2023;83:102798. [PMID: 37866012 PMCID: PMC10842063 DOI: 10.1016/j.conb.2023.102798] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 09/19/2023] [Accepted: 09/20/2023] [Indexed: 10/24/2023]
23
Wu S, Huang C, Snyder A, Smith M, Doiron B, Yu B. Automated customization of large-scale spiking network models to neuronal population activity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.21.558920. [PMID: 37790533 PMCID: PMC10542160 DOI: 10.1101/2023.09.21.558920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
24
Cimeša L, Ciric L, Ostojic S. Geometry of population activity in spiking networks with low-rank structure. PLoS Comput Biol 2023;19:e1011315. [PMID: 37549194 PMCID: PMC10461857 DOI: 10.1371/journal.pcbi.1011315] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 08/28/2023] [Accepted: 06/27/2023] [Indexed: 08/09/2023]  Open
25
Surmeier DJ, Zhai S, Cui Q, Simmons DV. Rethinking the network determinants of motor disability in Parkinson's disease. Front Synaptic Neurosci 2023;15:1186484. [PMID: 37448451 PMCID: PMC10336242 DOI: 10.3389/fnsyn.2023.1186484] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 06/12/2023] [Indexed: 07/15/2023]  Open
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