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Chen H, Kunimatsu J, Oya T, Imaizumi Y, Hori Y, Matsumoto M, Tsubo Y, Hikosaka O, Minamimoto T, Naya Y, Yamada H. Formation of brain-wide neural geometry during visual item recognition in monkeys. iScience 2025; 28:111936. [PMID: 40034850 PMCID: PMC11875189 DOI: 10.1016/j.isci.2025.111936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 10/31/2024] [Accepted: 01/28/2025] [Indexed: 03/05/2025] Open
Abstract
Neural dynamics are thought to reflect computations that relay and transform information in the brain. Previous studies have identified the neural population dynamics in many individual brain regions as a trajectory geometry, preserving a common computational motif. However, whether these populations share particular geometric patterns across brain-wide neural populations remains unclear. Here, by mapping neural dynamics widely across temporal/frontal/limbic regions in the cortical and subcortical structures of monkeys, we show that 10 neural populations, including 2,500 neurons, propagate visual item information in a stochastic manner. We found that visual inputs predominantly evoked rotational dynamics in the higher-order visual area, TE, and its downstream striatum tail, while curvy/straight dynamics appeared frequently downstream in the orbitofrontal/hippocampal network. These geometric changes were not deterministic but rather stochastic according to their respective emergence rates. Our meta-analysis results indicate that visual information propagates as a heterogeneous mixture of stochastic neural population signals in the brain.
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Affiliation(s)
- He Chen
- School of Psychological and Cognitive Sciences, Peking University, No. 52, Haidian Road, Haidian District, Beijing 100805, China
- Department of Physiology and Biophysics, Washington National Primate Research Center, University of Washington, Seattle, WA 98195, USA
| | - Jun Kunimatsu
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Transborder Medical Research Center, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA
| | - Tomomichi Oya
- Western Institute for Neuroscience, University of Western Ontario, London, ON N6A3K7, Canada
- Department of Physiology and Pharmacology, University of Western Ontario, London N6A 3K7, Canada
| | - Yuri Imaizumi
- College of Medical Sciences, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
| | - Yukiko Hori
- Advanced Neuroimaging Center, National Institutes for Quantum Science and Technology, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555, Japan
| | - Masayuki Matsumoto
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Transborder Medical Research Center, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
| | - Yasuhiro Tsubo
- College of Information Science and Engineering, Ritsumeikan University, 2-150 Iwakura-cho, Ibaraki, Osaka 567-8570, Japan
| | - Okihide Hikosaka
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA
| | - Takafumi Minamimoto
- Advanced Neuroimaging Center, National Institutes for Quantum Science and Technology, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555, Japan
| | - Yuji Naya
- School of Psychological and Cognitive Sciences, Peking University, No. 52, Haidian Road, Haidian District, Beijing 100805, China
- IDG/McGovern Institute for Brain Research at Peking University, No. 52, Haidian Road, Haidian District, Beijing 100805, China
- Beijing Key Laboratory of Behavior and Mental Health, Peking University, No. 52, Haidian Road, Haidian District, Beijing 100805, China
| | - Hiroshi Yamada
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Transborder Medical Research Center, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
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Khalifani S, Darvishzadeh R, Montaseri M, Zaman Zad Ghavidel S, Hatami Maleki H, Kordrostami M. Advanced computational approaches for predicting sunflower yield: Insights from ANN, ANFIS, and GEP in normal and salinity stress environments. PLoS One 2025; 20:e0319331. [PMID: 39992938 PMCID: PMC11849905 DOI: 10.1371/journal.pone.0319331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 01/29/2025] [Indexed: 02/26/2025] Open
Abstract
Prediction of crop yield is essential for decision-makers to ensure food security and provides valuable information to farmers about factors affecting high yields. This research aimed to predict sunflower grain yield under normal and salinity stress conditions using three modeling techniques: artificial neural networks (ANN), adaptive neuro-fuzzy inference system (ANFIS), and gene expression programming (GEP). A pot experiment was conducted with 96 inbred sunflower lines (generation six) derived from crossing two parent lines, over a single growing season. Ten morphological traits-including hundred-seed weight (HSW), number of leaves, leaf length (LL) and width, petiole length, stem diameter, plant height, head dry weight (HDW), days to flowering, and head diameter-were measured as input variables to predict grain yield. Salinity stress was induced by applying irrigation water with electrical conductivity (EC) levels of 2 dS/m (control) and 8 dS/m (stress condition) using NaCl, applied after the seedlings reached the 8-leaf stage. The GEP model demonstrated the highest precision in predicting sunflower grain yield, with coefficient of determination (R2) values of 0.803 and 0.743, root mean squared error (RMSE) of 4.115 and 4.022, and mean absolute error (MAE) of 3.177 and 2.803 under normal conditions and salinity stress, respectively, during the testing phase. Sensitivity analysis using the GEP model identified LL, head diameter, HSW, and HDW as the most significant parameters influencing grain yield under salinity stress. Therefore, the GEP model provides a promising tool for predicting sunflower grain yield, potentially aiding in yield improvement programs under varying environmental conditions.
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Affiliation(s)
- Sanaz Khalifani
- Department of Plant Production and Genetics, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Reza Darvishzadeh
- Department of Plant Production and Genetics, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Majid Montaseri
- Department of Water Engineering, Faculty of Agriculture, Urmia University, Urmia, Iran
| | | | - Hamid Hatami Maleki
- Department of Plant Production and Genetics, Faculty of Agriculture, University of Maragheh, Maragheh, Iran
| | - Mojtaba Kordrostami
- Nuclear Agriculture Research School, Nuclear Science and Technology Research Institute (NSTRI), Karaj, Iran
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Tymula A, Wang X, Imaizumi Y, Kawai T, Kunimatsu J, Matsumoto M, Yamada H. Dynamic prospect theory: Two core decision theories coexist in the gambling behavior of monkeys and humans. SCIENCE ADVANCES 2023; 9:eade7972. [PMID: 37205752 DOI: 10.1126/sciadv.ade7972] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 04/14/2023] [Indexed: 05/21/2023]
Abstract
Research in the multidisciplinary field of neuroeconomics has mainly been driven by two influential theories regarding human economic choice: prospect theory, which describes decision-making under risk, and reinforcement learning theory, which describes learning for decision-making. We hypothesized that these two distinct theories guide decision-making in a comprehensive manner. Here, we propose and test a decision-making theory under uncertainty that combines these highly influential theories. Collecting many gambling decisions from laboratory monkeys allowed for reliable testing of our model and revealed a systematic violation of prospect theory's assumption that probability weighting is static. Using the same experimental paradigm in humans, substantial similarities between these species were uncovered by various econometric analyses of our dynamic prospect theory model, which incorporates decision-by-decision learning dynamics of prediction errors into static prospect theory. Our model provides a unified theoretical framework for exploring a neurobiological model of economic choice in human and nonhuman primates.
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Affiliation(s)
- Agnieszka Tymula
- School of Economics, University of Sydney, Sydney, NSW 2006, Australia
| | - Xueting Wang
- School of Economics, Finance and Marketing, College of Business and Law, RMIT University, Melbourne, VIC 2476, Australia
| | - Yuri Imaizumi
- Medical Sciences, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
| | - Takashi Kawai
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
| | - Jun Kunimatsu
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Graduate School of Comprehensive Human Sciences, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Transborder Medical Research Center, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
| | - Masayuki Matsumoto
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Graduate School of Comprehensive Human Sciences, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Transborder Medical Research Center, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
| | - Hiroshi Yamada
- Division of Biomedical Science, Institute of Medicine, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Graduate School of Comprehensive Human Sciences, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
- Transborder Medical Research Center, University of Tsukuba, 1-1-1 Tenno-dai, Tsukuba, Ibaraki 305-8577, Japan
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A neuronal prospect theory model in the brain reward circuitry. Nat Commun 2022; 13:5855. [PMID: 36195765 PMCID: PMC9532451 DOI: 10.1038/s41467-022-33579-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 09/22/2022] [Indexed: 11/23/2022] Open
Abstract
Prospect theory, arguably the most prominent theory of choice, is an obvious candidate for neural valuation models. How the activity of individual neurons, a possible computational unit, obeys prospect theory remains unknown. Here, we show, with theoretical accuracy equivalent to that of human neuroimaging studies, that single-neuron activity in four core reward-related cortical and subcortical regions represents the subjective valuation of risky gambles in monkeys. The activity of individual neurons in monkeys passively viewing a lottery reflects the desirability of probabilistic rewards parameterized as a multiplicative combination of utility and probability weighting functions, as in the prospect theory framework. The diverse patterns of valuation signals were not localized but distributed throughout most parts of the reward circuitry. A network model aggregating these signals reconstructed the risk preferences and subjective probability weighting revealed by the animals’ choices. Thus, distributed neural coding explains the computation of subjective valuations under risk. It is unclear how the activity of individual neurons conform to prospect theory. Here, the authors demonstrate that the activity of single neurons in various reward-related regions in the monkey brain can be described as encoding a multiplicative combination of utility and probability weighting, and that this subjective valuation process is achieved via a distributed coding scheme.
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Neural Population Dynamics Underlying Expected Value Computation. J Neurosci 2021; 41:1684-1698. [PMID: 33441432 PMCID: PMC8115883 DOI: 10.1523/jneurosci.1987-20.2020] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Revised: 12/12/2020] [Accepted: 12/20/2020] [Indexed: 11/22/2022] Open
Abstract
Computation of expected values (i.e., probability × magnitude) seems to be a dynamic integrative process performed by the brain for efficient economic behavior. However, neural dynamics underlying this computation is largely unknown. Using lottery tasks in monkeys (Macaca mulatta, male; Macaca fuscata, female), we examined (1) whether four core reward-related brain regions detect and integrate probability and magnitude cued by numerical symbols and (2) whether these brain regions have distinct dynamics in the integrative process. Extraction of the mechanistic structure of neural population signals demonstrated that expected value signals simultaneously arose in the central orbitofrontal cortex (cOFC; medial part of area 13) and ventral striatum (VS). Moreover, these signals were incredibly stable compared with weak and/or fluctuating signals in the dorsal striatum and medial OFC. Temporal dynamics of these stable expected value signals were unambiguously distinct: sharp and gradual signal evolutions in the cOFC and VS, respectively. These intimate dynamics suggest that the cOFC and VS compute the expected values with unique time constants, as distinct, partially overlapping processes. SIGNIFICANCE STATEMENT Our results differ from those of earlier studies suggesting that many reward-related regions in the brain signal probability and/or magnitude and provide a mechanistic structure for expected value computation employed in multiple neural populations. A central part of the orbitofrontal cortex (cOFC) and ventral striatum (VS) can simultaneously detect and integrate probability and magnitude into an expected value. Our empirical study on these neural population dynamics raises a possibility that the cOFC and VS cooperate on this computation with unique time constants as distinct, partially overlapping processes.
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