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Ahmed MM, Hossain MM, Islam MR, Ali MS, Nafi AAN, Ahmed MF, Ahmed KM, Miah MS, Rahman MM, Niu M, Islam MK. Brain tumor detection and classification in MRI using hybrid ViT and GRU model with explainable AI in Southern Bangladesh. Sci Rep 2024; 14:22797. [PMID: 39354009 PMCID: PMC11445444 DOI: 10.1038/s41598-024-71893-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Accepted: 09/02/2024] [Indexed: 10/03/2024] Open
Abstract
Brain tumor, a leading cause of uncontrolled cell growth in the central nervous system, presents substantial challenges in medical diagnosis and treatment. Early and accurate detection is essential for effective intervention. This study aims to enhance the detection and classification of brain tumors in Magnetic Resonance Imaging (MRI) scans using an innovative framework combining Vision Transformer (ViT) and Gated Recurrent Unit (GRU) models. We utilized primary MRI data from Bangabandhu Sheikh Mujib Medical College Hospital (BSMMCH) in Faridpur, Bangladesh. Our hybrid ViT-GRU model extracts essential features via ViT and identifies relationships between these features using GRU, addressing class imbalance and outperforming existing diagnostic methods. We extensively processed the dataset, and then trained the model using various optimizers (SGD, Adam, AdamW) and evaluated through rigorous 10-fold cross-validation. Additionally, we incorporated Explainable Artificial Intelligence (XAI) techniques-Attention Map, SHAP, and LIME-to enhance the interpretability of the model's predictions. For the primary dataset BrTMHD-2023, the ViT-GRU model achieved precision, recall, and F1-score metrics of 97%. The highest accuracies obtained with SGD, Adam, and AdamW optimizers were 81.66%, 96.56%, and 98.97%, respectively. Our model outperformed existing Transfer Learning models by 1.26%, as validated through comparative analysis and cross-validation. The proposed model also shows excellent performances with another Brain Tumor Kaggle Dataset outperforming the existing research done on the same dataset with 96.08% accuracy. The proposed ViT-GRU framework significantly improves the detection and classification of brain tumors in MRI scans. The integration of XAI techniques enhances the model's transparency and reliability, fostering trust among clinicians and facilitating clinical application. Future work will expand the dataset and apply findings to real-time diagnostic devices, advancing the field.
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Affiliation(s)
- Md Mahfuz Ahmed
- Shaanxi Int'l Innovation Center for Transportation-Energy-Information Fusion and Sustainability, Chang'an University, Xi'an, 710064, China
- Department of Biomedical Engineering, Islamic University, 7003, Kushtia, Bangladesh
- Bio-Imaging Research Lab, Islamic University, 7003, Kushtia, Bangladesh
| | - Md Maruf Hossain
- Department of Biomedical Engineering, Islamic University, 7003, Kushtia, Bangladesh
- Bio-Imaging Research Lab, Islamic University, 7003, Kushtia, Bangladesh
| | - Md Rakibul Islam
- Bio-Imaging Research Lab, Islamic University, 7003, Kushtia, Bangladesh
- Department of Information and Communication Technology, Islamic University, 7003, Kushtia, Bangladesh
- Department of Computer Science and Engineering, Northern University Bangladesh, 1230, Dhaka, Bangladesh
| | - Md Shahin Ali
- Department of Biomedical Engineering, Islamic University, 7003, Kushtia, Bangladesh
- Bio-Imaging Research Lab, Islamic University, 7003, Kushtia, Bangladesh
| | - Abdullah Al Noman Nafi
- Department of Information and Communication Technology, Islamic University, 7003, Kushtia, Bangladesh
| | - Md Faisal Ahmed
- Ship International Hospital, 1230, Uttara, Dhaka, Bangladesh
| | - Kazi Mowdud Ahmed
- Department of Information and Communication Technology, Islamic University, 7003, Kushtia, Bangladesh
| | - Md Sipon Miah
- Shaanxi Int'l Innovation Center for Transportation-Energy-Information Fusion and Sustainability, Chang'an University, Xi'an, 710064, China
- Department of Information and Communication Technology, Islamic University, 7003, Kushtia, Bangladesh
- Wireless Communications with Machine Learning (WCML) Laboratory, Islamic University, 7003, Kushtia, Bangladesh
| | - Md Mahbubur Rahman
- Department of Information and Communication Technology, Islamic University, 7003, Kushtia, Bangladesh
| | - Mingbo Niu
- Shaanxi Int'l Innovation Center for Transportation-Energy-Information Fusion and Sustainability, Chang'an University, Xi'an, 710064, China.
| | - Md Khairul Islam
- Department of Biomedical Engineering, Islamic University, 7003, Kushtia, Bangladesh
- Bio-Imaging Research Lab, Islamic University, 7003, Kushtia, Bangladesh
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Jalal FE, Iqbal M, Khan WA, Jamal A, Onyelowe K, Lekhraj. ANN-based swarm intelligence for predicting expansive soil swell pressure and compression strength. Sci Rep 2024; 14:14597. [PMID: 38918592 PMCID: PMC11199650 DOI: 10.1038/s41598-024-65547-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 06/20/2024] [Indexed: 06/27/2024] Open
Abstract
This research suggests a robust integration of artificial neural networks (ANN) for predicting swell pressure and the unconfined compression strength of expansive soils (PsUCS-ES). Four novel ANN-based models, namely ANN-PSO (i.e., particle swarm optimization), ANN-GWO (i.e., grey wolf optimization), ANN-SMA (i.e., slime mould algorithm) alongside ANN-MPA (i.e., marine predators' algorithm) were deployed to assess the PsUCS-ES. The models were trained using the nine most influential parameters affecting PsUCS-ES, collected from a broader range of 145 published papers. The observed results were compared with the predictions made by the ANN-based metaheuristics models. The efficacy of all these formulated models was evaluated by utilizing mean absolute error (MAE), Nash-Sutcliffe (NS) efficiency, performance index ρ, regression coefficient (R2), root mean square error (RMSE), ratio of RMSE to standard deviation of actual observations (RSR), variance account for (VAF), Willmott's index of agreement (WI), and weighted mean absolute percentage error (WMAPE). All the developed models for Ps-ES had an R significantly > 0.8 for the overall dataset. However, ANN-MPA excelled in yielding high R values for training dataset (TrD), testing dataset (TsD), and validation dataset (VdD). This model also exhibited the lowest MAE of 5.63%, 5.68%, and 5.48% for TrD, TsD, and VdD, respectively. The results of the UCS model's performance revealed that R exceeded 0.9 in the TrD. However, R decreased for TsD and VdD. Also, the ANN-MPA model yielded higher R values (0.89, 0.93, and 0.94) and comparatively low MAE values (5.11%, 5.67, and 3.61%) in the case of PSO, GWO, and SMA, respectively. The UCS models witnessed an overfitting problem because the aforementioned R values of the metaheuristics were 0.62, 0.56, and 0.58 (TsD), respectively. On the contrary, no significant observation was recorded in the VdD of UCS models. All the ANN-base models were also tested using the a-20 index. For all the formulated models, maximum points were recorded to lie within ± 20% error. The results of sensitivity as well as monotonicity analyses depicted trending results that corroborate the existing literature. Therefore, it can be inferred that the recently built swarm-based ANN models, particularly ANN-MPA, can solve the complexities of tuning the hyperparameters of the ANN-predicted PsUCS-ES that can be replicated in practical scenarios of geoenvironmental engineering.
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Affiliation(s)
- Fazal E Jalal
- State Key Laboratory of Intelligent Geotechnics and Tunnelling, College of Civil and Transportation Engineering, Shenzhen University, Shenzhen, 518060, Guangdong, China.
- Key Laboratory of Coastal Urban Resilient Infrastructures (Shenzhen University), Ministry of Education, Shenzhen, China.
| | - Mudassir Iqbal
- Department of Civil Engineering, University of Engineering and Technology Peshawar, Peshawar, Pakistan.
| | - Waseem Akhtar Khan
- Department of Civil Engineering, University of Louisiana at Lafayette, Lafayette, LA, 70503, USA
| | - Arshad Jamal
- Department of Civil Engineering, College of Engineering, Qassim University, Buraydah, 51452, Saudi Arabia
| | - Kennedy Onyelowe
- Department of Civil Engineering, Kampala International University, Kampala, Uganda.
| | - Lekhraj
- Department of Computer Engineering and Applications, GLA University, Mathura, 281406, India
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Liu Y, Zeng Y, Li R, Zhu X, Zhang Y, Li W, Li T, Zhu D, Hu G. A Random Particle Swarm Optimization Based on Cosine Similarity for Global Optimization and Classification Problems. Biomimetics (Basel) 2024; 9:204. [PMID: 38667215 PMCID: PMC11048164 DOI: 10.3390/biomimetics9040204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 03/23/2024] [Accepted: 03/25/2024] [Indexed: 04/28/2024] Open
Abstract
In today's fast-paced and ever-changing environment, the need for algorithms with enhanced global optimization capability has become increasingly crucial due to the emergence of a wide range of optimization problems. To tackle this issue, we present a new algorithm called Random Particle Swarm Optimization (RPSO) based on cosine similarity. RPSO is evaluated using both the IEEE Congress on Evolutionary Computation (CEC) 2022 test dataset and Convolutional Neural Network (CNN) classification experiments. The RPSO algorithm builds upon the traditional PSO algorithm by incorporating several key enhancements. Firstly, the parameter selection is adapted and a mechanism called Random Contrastive Interaction (RCI) is introduced. This mechanism fosters information exchange among particles, thereby improving the ability of the algorithm to explore the search space more effectively. Secondly, quadratic interpolation (QI) is incorporated to boost the local search efficiency of the algorithm. RPSO utilizes cosine similarity for the selection of both QI and RCI, dynamically updating population information to steer the algorithm towards optimal solutions. In the evaluation using the CEC 2022 test dataset, RPSO is compared with recent variations of Particle Swarm Optimization (PSO) and top algorithms in the CEC community. The results highlight the strong competitiveness and advantages of RPSO, validating its effectiveness in tackling global optimization tasks. Additionally, in the classification experiments with optimizing CNNs for medical images, RPSO demonstrated stability and accuracy comparable to other algorithms and variants. This further confirms the value and utility of RPSO in improving the performance of CNN classification tasks.
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Affiliation(s)
- Yujia Liu
- School of Intelligent Manufacturing Engineering, Jiangxi College of Application Science and Technology, Nanchang 330000, China
| | - Yuan Zeng
- School of Intelligent Manufacturing Engineering, Jiangxi College of Application Science and Technology, Nanchang 330000, China
| | - Rui Li
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua 321004, China
| | - Xingyun Zhu
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua 321004, China
| | - Yuemai Zhang
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua 321004, China
| | - Weijie Li
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua 321004, China
| | - Taiyong Li
- School of Computing and Artificial Intelligence, Southwestern University of Finance and Economics, Chengdu 611130, China;
| | - Donglin Zhu
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua 321004, China
| | - Gangqiang Hu
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua 321004, China
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Mathivanan SK, Sonaimuthu S, Murugesan S, Rajadurai H, Shivahare BD, Shah MA. Employing deep learning and transfer learning for accurate brain tumor detection. Sci Rep 2024; 14:7232. [PMID: 38538708 PMCID: PMC10973383 DOI: 10.1038/s41598-024-57970-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 03/23/2024] [Indexed: 04/01/2024] Open
Abstract
Artificial intelligence-powered deep learning methods are being used to diagnose brain tumors with high accuracy, owing to their ability to process large amounts of data. Magnetic resonance imaging stands as the gold standard for brain tumor diagnosis using machine vision, surpassing computed tomography, ultrasound, and X-ray imaging in its effectiveness. Despite this, brain tumor diagnosis remains a challenging endeavour due to the intricate structure of the brain. This study delves into the potential of deep transfer learning architectures to elevate the accuracy of brain tumor diagnosis. Transfer learning is a machine learning technique that allows us to repurpose pre-trained models on new tasks. This can be particularly useful for medical imaging tasks, where labelled data is often scarce. Four distinct transfer learning architectures were assessed in this study: ResNet152, VGG19, DenseNet169, and MobileNetv3. The models were trained and validated on a dataset from benchmark database: Kaggle. Five-fold cross validation was adopted for training and testing. To enhance the balance of the dataset and improve the performance of the models, image enhancement techniques were applied to the data for the four categories: pituitary, normal, meningioma, and glioma. MobileNetv3 achieved the highest accuracy of 99.75%, significantly outperforming other existing methods. This demonstrates the potential of deep transfer learning architectures to revolutionize the field of brain tumor diagnosis.
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Affiliation(s)
| | - Sridevi Sonaimuthu
- Department of Computer Science and Engineering, Vel Tech Rangarajan Dr.Sagunthala R&D Institute of Science and Technology, Chennai, 600062, India
| | - Sankar Murugesan
- Department of Computer Science and Engineering, Vel Tech Rangarajan Dr.Sagunthala R&D Institute of Science and Technology, Chennai, 600062, India
| | - Hariharan Rajadurai
- School of Computing Science and Engineering, VIT Bhopal University, Bhopal-Indore Highway Kothrikalan, Sehore, 466114, India
| | - Basu Dev Shivahare
- School of Computer Science and Engineering, Galgotias University, Greater Noida, 203201, India
| | - Mohd Asif Shah
- Kebri Dehar University, 250, Kebri Dehar, Somali, Ethiopia.
- Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura, Punjab, 140401, India.
- Division of Research and Development, Lovely Professional University, Phagwara, Punjab, 144001, India.
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Selvi T K, Sumaiya Begum A, Poonkuzhali P, Aarthi R. Brain tumor classification for MRI images using dual-discriminator conditional generative adversarial network. Electromagn Biol Med 2024:1-14. [PMID: 38461438 DOI: 10.1080/15368378.2024.2321352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 02/15/2024] [Indexed: 03/12/2024]
Abstract
This research focuses on improving the detection and classification of brain tumors using a method called Brain Tumor Classification using Dual-Discriminator Conditional Generative Adversarial Network (DDCGAN) for MRI images. The proposed system is implemented in the MATLAB programming language. In this study, images of the brain are taken from a dataset and processed to remove noise and enhance image quality. The brain pictures are taken from Brats MRI image dataset. The images are preprocessed using Structural interval gradient filtering to remove noises and improve the quality of the image. The preprocessing outcomes are given to feature extraction. The features are extracted by Empirical wavelet transform (EWT) and the extracted features are given to the Dual-discriminator conditional generative adversarial network (DDCGAN) for recognizing the brain tumor, which classifies the brain images into glioma, meningioma, pituitary gland, and normal. Then, the weight parameter of DDCGAN is optimized by utilizing Border Collie Optimization (BCO), which is a met a heuristic approach to handle the real world optimization issues. It maximizes the detection accurateness and reduced computational time. Implemented in MATLAB, the experimental results demonstrate that the proposed system achieves a high sensitivity of 99.58%. The BCO-DDCGAN-MRI-BTC method outperforms existing techniques in terms of precision and sensitivity when compared to methods like Kernel Basis SVM (KSVM-HHO-BTC), Joint Training of Two-Channel Deep Neural Network (JT-TCDNN-BTC), and YOLOv2 including Convolutional Neural Network (YOLOv2-CNN-BTC). The research findings indicate that the proposed method enhances the accuracy of brain tumor classification while reducing computational time and errors.
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Affiliation(s)
- Kalai Selvi T
- Department of Artificial Intelligence and Data Science, Easwari Engineering College, Chennai, Tamil Nadu, India
| | - A Sumaiya Begum
- Department of Electronics and Communication Engineering, R.M.D Engineering College, Chennai, Tamil Nadu, India
| | - P Poonkuzhali
- Department of Electronics and Communication Engineering, R.M.D Engineering College, Chennai, Tamil Nadu, India
| | - R Aarthi
- Department of Electronics and Communication Engineering, R.M.D Engineering College, Chennai, Tamil Nadu, India
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Bhimavarapu U, Chintalapudi N, Battineni G. Brain Tumor Detection and Categorization with Segmentation of Improved Unsupervised Clustering Approach and Machine Learning Classifier. Bioengineering (Basel) 2024; 11:266. [PMID: 38534540 DOI: 10.3390/bioengineering11030266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 02/28/2024] [Accepted: 03/04/2024] [Indexed: 03/28/2024] Open
Abstract
There is no doubt that brain tumors are one of the leading causes of death in the world. A biopsy is considered the most important procedure in cancer diagnosis, but it comes with drawbacks, including low sensitivity, risks during biopsy treatment, and a lengthy wait for results. Early identification provides patients with a better prognosis and reduces treatment costs. The conventional methods of identifying brain tumors are based on medical professional skills, so there is a possibility of human error. The labor-intensive nature of traditional approaches makes healthcare resources expensive. A variety of imaging methods are available to detect brain tumors, including magnetic resonance imaging (MRI) and computed tomography (CT). Medical imaging research is being advanced by computer-aided diagnostic processes that enable visualization. Using clustering, automatic tumor segmentation leads to accurate tumor detection that reduces risk and helps with effective treatment. This study proposed a better Fuzzy C-Means segmentation algorithm for MRI images. To reduce complexity, the most relevant shape, texture, and color features are selected. The improved Extreme Learning machine classifies the tumors with 98.56% accuracy, 99.14% precision, and 99.25% recall. The proposed classifier consistently demonstrates higher accuracy across all tumor classes compared to existing models. Specifically, the proposed model exhibits accuracy improvements ranging from 1.21% to 6.23% when compared to other models. This consistent enhancement in accuracy emphasizes the robust performance of the proposed classifier, suggesting its potential for more accurate and reliable brain tumor classification. The improved algorithm achieved accuracy, precision, and recall rates of 98.47%, 98.59%, and 98.74% on the Fig share dataset and 99.42%, 99.75%, and 99.28% on the Kaggle dataset, respectively, which surpasses competing algorithms, particularly in detecting glioma grades. The proposed algorithm shows an improvement in accuracy, of approximately 5.39%, in the Fig share dataset and of 6.22% in the Kaggle dataset when compared to existing models. Despite challenges, including artifacts and computational complexity, the study's commitment to refining the technique and addressing limitations positions the improved FCM model as a noteworthy advancement in the realm of precise and efficient brain tumor identification.
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Affiliation(s)
- Usharani Bhimavarapu
- Department of Computer Science and Engineering, Koneru Lakshmaiah Education Foundation, Vaddeswaram 522302, India
| | - Nalini Chintalapudi
- Clinical Research Centre, School of Medicinal and Health Products Sciences, University of Camerino, 62032 Camerino, Italy
| | - Gopi Battineni
- Clinical Research Centre, School of Medicinal and Health Products Sciences, University of Camerino, 62032 Camerino, Italy
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Rasa SM, Islam MM, Talukder MA, Uddin MA, Khalid M, Kazi M, Kazi MZ. Brain tumor classification using fine-tuned transfer learning models on magnetic resonance imaging (MRI) images. Digit Health 2024; 10:20552076241286140. [PMID: 39381813 PMCID: PMC11459499 DOI: 10.1177/20552076241286140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Accepted: 08/30/2024] [Indexed: 10/10/2024] Open
Abstract
OBJECTIVE Brain tumors are a leading global cause of mortality, often leading to reduced life expectancy and challenging recovery. Early detection significantly improves survival rates. This paper introduces an efficient deep learning model to expedite brain tumor detection through timely and accurate identification using magnetic resonance imaging images. METHODS Our approach leverages deep transfer learning with six transfer learning algorithms: VGG16, ResNet50, MobileNetV2, DenseNet201, EfficientNetB3, and InceptionV3. We optimize data preprocessing, upsample data through augmentation, and train the models using two optimizers: Adam and AdaMax. We perform three experiments with binary and multi-class datasets, fine-tuning parameters to reduce overfitting. Model effectiveness is analyzed using various performance scores with and without cross-validation. RESULTS With smaller datasets, the models achieve 100% accuracy in both training and testing without cross-validation. After applying cross-validation, the framework records an outstanding accuracy of 99.96% with a receiver operating characteristic of 100% on average across five tests. For larger datasets, accuracy ranges from 96.34% to 98.20% across different models. The methodology also demonstrates a small computation time, contributing to its reliability and speed. CONCLUSION The study establishes a new standard for brain tumor classification, surpassing existing methods in accuracy and efficiency. Our deep learning approach, incorporating advanced transfer learning algorithms and optimized data processing, provides a robust and rapid solution for brain tumor detection.
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Affiliation(s)
- Sadia Maduri Rasa
- Department of Computer Science and Engineering, Jagannath University, Dhaka, Bangladesh
| | | | - Mohammed Alamin Talukder
- Department of Computer Science and Engineering, International University of Business Agriculture and Technology, Dhaka, Bangladesh
| | | | - Majdi Khalid
- Department of Computer Science and Artificial Intelligence,
College of Computing, Umm Al-Qura University, Makkah,
Saudi Arabia
| | - Mohsin Kazi
- Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Mohammed Zobayer Kazi
- Department of Computer Science and Engineering, Jagannath University, Dhaka, Bangladesh
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Bhatt A, Nigam VS. Highly accurate brain tumor detection with high sensitivity using transform-based functions and machine learning algorithms. Technol Health Care 2024; 32:4239-4256. [PMID: 39177617 PMCID: PMC11612949 DOI: 10.3233/thc-240052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 04/16/2024] [Indexed: 08/24/2024]
Abstract
BACKGROUND Brain tumor is an extremely dangerous disease with a very high mortality rate worldwide. Detecting brain tumors accurately is crucial due to the varying appearance of tumor cells and the dimensional irregularities in their growth. This poses a significant challenge for detection algorithms. Currently, there are numerous algorithms utilized for this purpose, ranging from transform-based methods to those rooted in machine learning techniques. These algorithms aim to enhance the accuracy of detection despite the complexities involved in identifying brain tumor cells. The major limitation of these algorithms is the mapping of extracted features of a brain tumor in the classification algorithms. OBJECTIVE To employ a combination of transform methods to extract texture feature from brain tumor images. METHODS This paper employs a combination of transform methods based on sub band decomposition for texture feature extraction from MRI scans, hybrid feature optimization methods using firefly and glow-worm algorithms for selection of feature, employment of MKSVM algorithm and stacking ensemble classifier for classification and application of the feature of fusion of different feature extraction methods. RESULTS The algorithm under consideration has been put into practice using MATLAB, utilizing datasets from BRATS (Brain Tumor Segmentation) for the years 2013, 2015, and 2018. These datasets serve as the foundation for testing and validating the algorithm's performance across different time periods, providing a comprehensive assessment of its effectiveness in detecting brain tumors. The proposed algorithm achieves maximum detection accuracy, detection sensitivity and specificity up to 98%, 99% and 99.5% respectively. The experimental outcomes showcase the efficiency of the algorithm in detection of brain tumor. CONCLUSION The proposed work mainly contributes in brain tumor detection in the following aspects: a) use of combination of transform methods for texture feature extraction from MRI scans b) hybrid feature selection methods using firefly and glow-worm optimization algorithms for selection of feature c) employment of MKSVM algorithm and stacking ensemble classifier for classification and application of the feature of fusion of different feature extraction methods.
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Affiliation(s)
- Ashish Bhatt
- University Institute of Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya (RGPV), Bhopal, India
| | - Vineeta Saxena Nigam
- University Institute of Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya (RGPV), Bhopal, India
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Zhou D, Xu L, Wang T, Wei S, Gao F, Lai X, Cao J. M-DDC: MRI based demyelinative diseases classification with U-Net segmentation and convolutional network. Neural Netw 2024; 169:108-119. [PMID: 37890361 DOI: 10.1016/j.neunet.2023.10.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 09/03/2023] [Accepted: 10/09/2023] [Indexed: 10/29/2023]
Abstract
Childhood demyelinative diseases classification (DDC) with brain magnetic resonance imaging (MRI) is crucial to clinical diagnosis. But few attentions have been paid to DDC in the past. How to accurately differentiate pediatric-onset neuromyelitis optica spectrum disorder (NMOSD) from acute disseminated encephalomyelitis (ADEM) based on MRI is challenging in DDC. In this paper, a novel architecture M-DDC based on joint U-Net segmentation network and deep convolutional network is developed. The U-Net segmentation can provide pixel-level structure information, that helps the lesion areas location and size estimation. The classification branch in DDC can detect the regions of interest inside MRIs, including the white matter regions where lesions appear. The performance of the proposed method is evaluated on MRIs of 201 subjects recorded from the Children's Hospital of Zhejiang University School of Medicine. The comparisons show that the proposed DDC achieves the highest accuracy of 99.19% and dice of 71.1% for ADEM and NMOSD classification and segmentation, respectively.
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Affiliation(s)
- Deyang Zhou
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou Dianzi University, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, 310018, China; HDU-ITMO Joint Institute, Hangzhou Dianzi University, Zhejiang, 310018, China.
| | - Lu Xu
- Department of Neurology, Children's Hospital, Zhejiang University School of Medicine, 310018, China.
| | - Tianlei Wang
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou Dianzi University, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, 310018, China.
| | - Shaonong Wei
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou Dianzi University, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, 310018, China; HDU-ITMO Joint Institute, Hangzhou Dianzi University, Zhejiang, 310018, China.
| | - Feng Gao
- Department of Neurology, Children's Hospital, Zhejiang University School of Medicine, 310018, China.
| | - Xiaoping Lai
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou Dianzi University, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, 310018, China.
| | - Jiuwen Cao
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou Dianzi University, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, 310018, China.
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Melekoodappattu JG, Kandambeth Puthiyapurayil C, Vylala A, Sahaya Dhas A. Brain cancer classification based on multistage ensemble generative adversarial network and convolutional neural network. Cell Biochem Funct 2023; 41:1357-1369. [PMID: 37822036 DOI: 10.1002/cbf.3870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 08/14/2023] [Accepted: 10/03/2023] [Indexed: 10/13/2023]
Abstract
An advanced approach that capitalizes on the synergies between multimodal feature fusion and the dual-path network is presented in this manuscript. Our proposed methodology harnesses a combination of potent techniques, merging the benefits of nonlinear mapping and expansive perception. The foundation of our methodology lies in leveraging well-established pretrained models, namely EfficientNet-B7, ResNet-152, and a meticulously crafted custom convolutional neural network (CNN), to effectively extract salient features from the data. These models are combined in a two-stage ensemble approach. We employ maximum variance unfolding (MVU) to select the most relevant attributes from the extracted features. In this study, we propose a hybrid approach that integrates a generative adversarial network and Neural Autoregressive Distribution Estimation (NADE-K) with a CNN. The resulting two-stage ensemble hybrid CNN model achieves an accuracy of 99.63%. The implementation of the two-stage ensemble hybrid CNN with MVU demonstrates significant improvements in brain tumor classification.
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Affiliation(s)
| | | | - Anoop Vylala
- Department of Electronics and Communication Engineering, Jyothi Engineering College, Thrissur, Kerala, India
| | - Anto Sahaya Dhas
- Department of Electronics and Communication Engineering, Vimal Jyothi Engineering College, Kannur, Kerala, India
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Ullah N, Javed A, Alhazmi A, Hasnain SM, Tahir A, Ashraf R. TumorDetNet: A unified deep learning model for brain tumor detection and classification. PLoS One 2023; 18:e0291200. [PMID: 37756305 PMCID: PMC10530039 DOI: 10.1371/journal.pone.0291200] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 08/23/2023] [Indexed: 09/29/2023] Open
Abstract
Accurate diagnosis of the brain tumor type at an earlier stage is crucial for the treatment process and helps to save the lives of a large number of people worldwide. Because they are non-invasive and spare patients from having an unpleasant biopsy, magnetic resonance imaging (MRI) scans are frequently employed to identify tumors. The manual identification of tumors is difficult and requires considerable time due to the large number of three-dimensional images that an MRI scan of one patient's brain produces from various angles. Moreover, the variations in location, size, and shape of the brain tumor also make it challenging to detect and classify different types of tumors. Thus, computer-aided diagnostics (CAD) systems have been proposed for the detection of brain tumors. In this paper, we proposed a novel unified end-to-end deep learning model named TumorDetNet for brain tumor detection and classification. Our TumorDetNet framework employs 48 convolution layers with leaky ReLU (LReLU) and ReLU activation functions to compute the most distinctive deep feature maps. Moreover, average pooling and a dropout layer are also used to learn distinctive patterns and reduce overfitting. Finally, one fully connected and a softmax layer are employed to detect and classify the brain tumor into multiple types. We assessed the performance of our method on six standard Kaggle brain tumor MRI datasets for brain tumor detection and classification into (malignant and benign), and (glioma, pituitary, and meningioma). Our model successfully identified brain tumors with remarkable accuracy of 99.83%, classified benign and malignant brain tumors with an ideal accuracy of 100%, and meningiomas, pituitary, and gliomas tumors with an accuracy of 99.27%. These outcomes demonstrate the potency of the suggested methodology for the reliable identification and categorization of brain tumors.
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Affiliation(s)
- Naeem Ullah
- Department of Software Engineering, University of Engineering and Technology, Taxila, Pakistan
| | - Ali Javed
- Department of Software Engineering, University of Engineering and Technology, Taxila, Pakistan
| | - Ali Alhazmi
- College of Computer Science and Information Technology, Jazan University, Jazan, Saudi Arabia
| | - Syed M. Hasnain
- Department of Mathematics and Natural Sciences, Prince Mohammad Bin Fahd University, Al Kobar, Saudi Arabia
| | - Ali Tahir
- College of Computer Science and Information Technology, Jazan University, Jazan, Saudi Arabia
| | - Rehan Ashraf
- Department of Computer Science, National Textile University, Faisalabad, Pakistan
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12
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Darwish SM, Abu Shaheen LJ, Elzoghabi AA. A New Medical Analytical Framework for Automated Detection of MRI Brain Tumor Using Evolutionary Quantum Inspired Level Set Technique. Bioengineering (Basel) 2023; 10:819. [PMID: 37508846 PMCID: PMC10376225 DOI: 10.3390/bioengineering10070819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 06/29/2023] [Accepted: 07/04/2023] [Indexed: 07/30/2023] Open
Abstract
Segmenting brain tumors in 3D magnetic resonance imaging (3D-MRI) accurately is critical for easing the diagnostic and treatment processes. In the field of energy functional theory-based methods for image segmentation and analysis, level set methods have emerged as a potent computational approach that has greatly aided in the advancement of the geometric active contour model. An important factor in reducing segmentation error and the number of required iterations when using the level set technique is the choice of the initial contour points, both of which are important when dealing with the wide range of sizes, shapes, and structures that brain tumors may take. To define the velocity function, conventional methods simply use the image gradient, edge strength, and region intensity. This article suggests a clustering method influenced by the Quantum Inspired Dragonfly Algorithm (QDA), a metaheuristic optimizer inspired by the swarming behaviors of dragonflies, to accurately extract initial contour points. The proposed model employs a quantum-inspired computing paradigm to stabilize the trade-off between exploitation and exploration, thereby compensating for any shortcomings of the conventional DA-based clustering method, such as slow convergence or falling into a local optimum. To begin, the quantum rotation gate concept can be used to relocate a colony of agents to a location where they can better achieve the optimum value. The main technique is then given a robust local search capacity by adopting a mutation procedure to enhance the swarm's mutation and realize its variety. After a preliminary phase in which the cranium is disembodied from the brain, tumor contours (edges) are determined with the help of QDA. An initial contour for the MRI series will be derived from these extracted edges. The final step is to use a level set segmentation technique to isolate the tumor area across all volume segments. When applied to 3D-MRI images from the BraTS' 2019 dataset, the proposed technique outperformed state-of-the-art approaches to brain tumor segmentation, as shown by the obtained results.
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Affiliation(s)
- Saad M Darwish
- Department of Information Technology, Institute of Graduate Studies and Research, Alexandria University, 163 Horreya Avenue, El Shatby, Alexandria 21526, Egypt
| | - Lina J Abu Shaheen
- Department of Computer Information Systems, College of Technology and Applied Sciences, Al-Quds Open University, Deir AL Balah P920, Palestine
| | - Adel A Elzoghabi
- Department of Information Technology, Institute of Graduate Studies and Research, Alexandria University, 163 Horreya Avenue, El Shatby, Alexandria 21526, Egypt
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13
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Sharma AK, Nandal A, Dhaka A, Polat K, Alwadie R, Alenezi F, Alhudhaif A. HOG transformation based feature extraction framework in modified Resnet50 model for brain tumor detection. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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14
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Ramtekkar PK, Pandey A, Pawar MK. Accurate detection of brain tumor using optimized feature selection based on deep learning techniques. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-31. [PMID: 37362641 PMCID: PMC10126578 DOI: 10.1007/s11042-023-15239-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 03/12/2023] [Accepted: 03/30/2023] [Indexed: 06/28/2023]
Abstract
An unusual increase of nerves inside the brain, which disturbs the actual working of the brain, is called a brain tumor. It has led to the death of lots of lives. To save people from this disease timely detection and the right cure is the need of time. Finding of tumor-affected cells in the human brain is a cumbersome and time- consuming task. However, the accuracy and time required to detect brain tumors is a big challenge in the arena of image processing. This research paper proposes a novel, accurate and optimized system to detect brain tumors. The system follows the activities like, preprocessing, segmentation, feature extraction, optimization and detection. For preprocessing system uses a compound filter, which is a composition of Gaussian, mean and median filters. Threshold and histogram techniques are applied for image segmentation. Grey level co-occurrence matrix (GLCM) is used for feature extraction. The optimized convolution neural network (CNN) technique is applied here that uses whale optimization and grey wolf optimization for best feature selection. Detection of brain tumors is achieved through CNN classifier. This system compares its performance with another modern technique of optimization by using accuracy, precision and recall parameters and claims the supremacy of this work. This system is implemented in the Python programming language. The brain tumor detection accuracy of this optimized system has been measured at 98.9%.
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Affiliation(s)
- Praveen Kumar Ramtekkar
- University Institute of Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya, Bhopal, Madhya Pradesh India
| | - Anjana Pandey
- University Institute of Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya, Bhopal, Madhya Pradesh India
| | - Mahesh Kumar Pawar
- University Institute of Technology, Rajiv Gandhi Proudyogiki Vishwavidyalaya, Bhopal, Madhya Pradesh India
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15
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Bhavani R, Vasanth K. Brain image fusion-based tumour detection using grey level co-occurrence matrix Tamura feature extraction with backpropagation network classification. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:8727-8744. [PMID: 37161219 DOI: 10.3934/mbe.2023383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Most challenging task in medical image analysis is the detection of brain tumours, which can be accomplished by methodologies such as MRI, CT and PET. MRI and CT images are chosen and fused after preprocessing and SWT-based decomposition stage to increase efficiency. The fused image is obtained through ISWT. Further, its features are extracted through the GLCM-Tamura method and fed to the BPN classifier. Will employ supervised learning with a non-knowledge-based classifier for picture classification. The classifier utilized Trained databases of the tumour as benign or malignant from which the tumour region is segmented via k-means clustering. After the software needs to be implemented, the health status of the patients is notified through GSM. Our method integrates image fusion, feature extraction, and classification to distinguish and further segment the tumour-affected area and to acknowledge the affected person. The experimental analysis has been carried out regarding accuracy, precision, recall, F-1 score, RMSE and MAP.
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Affiliation(s)
- R Bhavani
- Department of ECE, Sathyabama Institute of Science and Technology, Chennai 600119, India
| | - K Vasanth
- Department of ECE, Vidya Jyothi Institute of Technology, Hyderabad 500075, India
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16
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Xie Y, Sun J. Robust lockwire segmentation with multiscale boundary-driven regional stability. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2023; 40:397-410. [PMID: 37133006 DOI: 10.1364/josaa.472215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Lockwire segmentation plays a vital role in ensuring mechanical safety in industrial fields. Aiming at the missed detection problem encountered in blurred and low-contrast situations, we propose a robust lockwire segmentation method based on multiscale boundary-driven regional stability. We first design a novel multiscale boundary-driven stability criterion to generate a blur-robustness stability map. Then, the curvilinear structure enhancement metric and linearity measurement function are defined to compute the likeliness of stable regions to belong to lockwires. Finally, the closed boundaries of lockwires are determined to achieve accurate segmentation. Experimental results demonstrate that our proposed method outperforms state-of-the-art object segmentation methods.
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17
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Athisayamani S, Antonyswamy RS, Sarveshwaran V, Almeshari M, Alzamil Y, Ravi V. Feature Extraction Using a Residual Deep Convolutional Neural Network (ResNet-152) and Optimized Feature Dimension Reduction for MRI Brain Tumor Classification. Diagnostics (Basel) 2023; 13:668. [PMID: 36832156 PMCID: PMC9955169 DOI: 10.3390/diagnostics13040668] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 02/02/2023] [Accepted: 02/06/2023] [Indexed: 02/12/2023] Open
Abstract
One of the top causes of mortality in people globally is a brain tumor. Today, biopsy is regarded as the cornerstone of cancer diagnosis. However, it faces difficulties, including low sensitivity, hazards during biopsy treatment, and a protracted waiting period for findings. In this context, developing non-invasive and computational methods for identifying and treating brain cancers is crucial. The classification of tumors obtained from an MRI is crucial for making a variety of medical diagnoses. However, MRI analysis typically requires much time. The primary challenge is that the tissues of the brain are comparable. Numerous scientists have created new techniques for identifying and categorizing cancers. However, due to their limitations, the majority of them eventually fail. In that context, this work presents a novel way of classifying multiple types of brain tumors. This work also introduces a segmentation algorithm known as Canny Mayfly. Enhanced chimpanzee optimization algorithm (EChOA) is used to select the features by minimizing the dimension of the retrieved features. ResNet-152 and the softmax classifier are then used to perform the feature classification process. Python is used to carry out the proposed method on the Figshare dataset. The accuracy, specificity, and sensitivity of the proposed cancer classification system are just a few of the characteristics that are used to evaluate its overall performance. According to the final evaluation results, our proposed strategy outperformed, with an accuracy of 98.85%.
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Affiliation(s)
| | - Robert Singh Antonyswamy
- Department of Computational Intelligence, School of Computing, SRM Institute of Science and Technology, Kattankulathur, Chennai 603203, India
| | - Velliangiri Sarveshwaran
- Department of Computational Intelligence, School of Computing, SRM Institute of Science and Technology, Kattankulathur, Chennai 603203, India
| | - Meshari Almeshari
- Department of Diagnostic Radiology, College of Applied Medical Sciences, University of Ha’il, Ha’il 55476, Saudi Arabia
| | - Yasser Alzamil
- Department of Diagnostic Radiology, College of Applied Medical Sciences, University of Ha’il, Ha’il 55476, Saudi Arabia
| | - Vinayakumar Ravi
- Center for Artificial Intelligence, Prince Mohammad Bin Fahd University, Khobar 34754, Saudi Arabia
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18
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Fayyaz AM, Raza M, Sharif M, Shah JH, Kadry S, Martínez OS. An Integrated Framework for COVID-19 Classification Based on Ensembles of Deep Features and Entropy Coded GLEO Feature Selection. INT J UNCERTAIN FUZZ 2023. [DOI: 10.1142/s0218488523500101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
Abstract
COVID-19 is a challenging worldwide pandemic disease nowadays that spreads from person to person in a very fast manner. It is necessary to develop an automated technique for COVID-19 identification. This work investigates a new framework that predicts COVID-19 based on X-ray images. The suggested methodology contains core phases as preprocessing, feature extraction, selection and categorization. The Guided and 2D Gaussian filters are utilized for image improvement as a preprocessing phase. The outcome is then passed to 2D-superpixel method for region of interest (ROI). The pre-trained models such as Darknet-53 and Densenet-201 are then applied for features extraction from the segmented images. The entropy coded GLEO features selection is based on the extracted and selected features, and ensemble serially to produce a single feature vector. The single vector is finally supplied as an input to the variations of the SVM classifier for the categorization of the normal/abnormal (COVID-19) X-rays images. The presented approach is evaluated with different measures known as accuracy, recall, F1 Score, and precision. The integrated framework for the proposed system achieves the acceptable accuracies on the SVM Classifiers, which authenticate the proposed approach’s effectiveness.
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Affiliation(s)
- Abdul Muiz Fayyaz
- Department of Computer Science, University of Wah, Wah Cantt 47040, Pakistan
| | - Mudassar Raza
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt, 47040, Pakistan
| | - Muhammad Sharif
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt, 47040, Pakistan
| | - Jamal Hussain Shah
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt, 47040, Pakistan
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, Kristiansand, Norway
- Artificial Intelligence Research Center (AIRC), Ajman University, Ajman, 346, United Arab Emirates
- Department of Electrical and Computer Engineering, Lebanese American University, Byblos, Lebanon
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19
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Reis HC, Turk V. Transfer Learning Approach and Nucleus Segmentation with MedCLNet Colon Cancer Database. J Digit Imaging 2023; 36:306-325. [PMID: 36127531 PMCID: PMC9984669 DOI: 10.1007/s10278-022-00701-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 09/07/2022] [Accepted: 09/08/2022] [Indexed: 11/30/2022] Open
Abstract
Machine learning has been recently used especially in the medical field. In the diagnosis of serious diseases such as cancer, deep learning techniques can be used to reduce the workload of experts and to produce quick solutions. The nuclei found in the histopathology dataset are an essential parameter in disease detection. The nucleus segmentation was performed using the colorectal histology MNIST dataset for nucleus detection in this study. The graph theory, PSO, watershed, and random walker algorithms were used for the segmentation process. In addition, we present the 10-class MedCLNet visual dataset consisting of the NCT-CRC-HE-100 K dataset, LC25000 dataset, and GlaS dataset that can be used in transfer learning studies from deep learning techniques. The study proposes a transfer learning technique using the MedCLNet database. Deep neural networks pre-trained with the proposed transfer learning method were used in the classification with the colorectal histology MNIST dataset in the experimental process. DenseNet201, DenseNet169, InceptionResNetV2, InceptionV3, ResNet152V2, ResNet101V2, and Xception deep learning algorithms were used in transfer learning and the classification studies. The proposed approach was analyzed before and after transfer learning with different methods (DenseNet169 + SVM, DenseNet169 + GRU). In the performance measurement, using the colorectal histology MNIST dataset, 94.29% accuracy was obtained in the DenseNet169 model, which was initiated with random weights in the multi-classification study, and 95.00% accuracy after transfer learning was applied. In comparison with the results obtained from empirical studies, it was demonstrated that the proposed method produced satisfactory outcomes. The application is expected to provide a secondary evaluation for physicians in colon cancer detection and the segmentation.
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Affiliation(s)
- Hatice Catal Reis
- Department of Geomatics Engineering, Gumushane University, Gumushane, 2900, Turkey.
| | - Veysel Turk
- Department of Computer Engineering, University of Harran, Sanliurfa, Turkey
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20
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Computer-Aided Early Melanoma Brain-Tumor Detection Using Deep-Learning Approach. Biomedicines 2023; 11:biomedicines11010184. [PMID: 36672693 PMCID: PMC9856126 DOI: 10.3390/biomedicines11010184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 01/06/2023] [Accepted: 01/09/2023] [Indexed: 01/14/2023] Open
Abstract
Brain tumors affect the normal functioning of the brain and if not treated in time these cancerous cells may affect the other tissues, blood vessels, and nerves surrounding these cells. Today, a large population worldwide is affected by the precarious disease of the brain tumor. Healthy tissues of the brain are suspected to be damaged because of tumors that become the most significant reason for a large number of deaths nowadays. Therefore, their early detection is necessary to prevent patients from unfortunate mishaps resulting in loss of lives. The manual detection of brain tumors is a challenging task due to discrepancies in appearance in terms of shape, size, nucleus, etc. As a result, an automatic system is required for the early detection of brain tumors. In this paper, the detection of tumors in brain cells is carried out using a deep convolutional neural network with stochastic gradient descent (SGD) optimization algorithm. The multi-classification of brain tumors is performed using the ResNet-50 model and evaluated on the public Kaggle brain-tumor dataset. The method achieved 99.82% and 99.5% training and testing accuracy, respectively. The experimental result indicates that the proposed model outperformed baseline methods, and provides a compelling reason to be applied to other diseases.
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21
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Hybrid Techniques of Analyzing MRI Images for Early Diagnosis of Brain Tumours Based on Hybrid Features. Processes (Basel) 2023. [DOI: 10.3390/pr11010212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Brain tumours are considered one of the deadliest tumours in humans and have a low survival rate due to their heterogeneous nature. Several types of benign and malignant brain tumours need to be diagnosed early to administer appropriate treatment. Magnetic resonance (MR) images provide details of the brain’s internal structure, which allow radiologists and doctors to diagnose brain tumours. However, MR images contain complex details that require highly qualified experts and a long time to analyse. Artificial intelligence techniques solve these challenges. This paper presents four proposed systems, each with more than one technology. These techniques vary between machine, deep and hybrid learning. The first system comprises artificial neural network (ANN) and feedforward neural network (FFNN) algorithms based on the hybrid features between local binary pattern (LBP), grey-level co-occurrence matrix (GLCM) and discrete wavelet transform (DWT) algorithms. The second system comprises pre-trained GoogLeNet and ResNet-50 models for dataset classification. The two models achieved superior results in distinguishing between the types of brain tumours. The third system is a hybrid technique between convolutional neural network and support vector machine. This system also achieved superior results in distinguishing brain tumours. The fourth proposed system is a hybrid of the features of GoogLeNet and ResNet-50 with the LBP, GLCM and DWT algorithms (handcrafted features) to obtain representative features and classify them using the ANN and FFNN. This method achieved superior results in distinguishing between brain tumours and performed better than the other methods. With the hybrid features of GoogLeNet and hand-crafted features, FFNN achieved an accuracy of 99.9%, a precision of 99.84%, a sensitivity of 99.95%, a specificity of 99.85% and an AUC of 99.9%.
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22
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Saleem S, Amin J, Sharif M, Mallah GA, Kadry S, Gandomi AH. Leukemia segmentation and classification: A comprehensive survey. Comput Biol Med 2022; 150:106028. [PMID: 36126356 DOI: 10.1016/j.compbiomed.2022.106028] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 07/11/2022] [Accepted: 08/20/2022] [Indexed: 11/30/2022]
Abstract
Blood is made up of leukocytes (WBCs), erythrocytes (RBCs), and thrombocytes. The ratio of blood cancer diseases is increasing rapidly, among which leukemia is one of the famous cancer which may lead to death. Leukemia cancer is initiated by the unnecessary growth of immature WBCs present in the sponge tissues of bone marrow. It is generally analyzed by etiologists by perceiving slides of blood smear images under a microscope. The morphological features and blood cells count facilitated the etiologists to detect leukemia. Due to the late detection and expensive instruments used for leukemia analysis, the death rate has risen significantly. The fluorescence-based cell sorting technique and manual recounts using a hemocytometer are error-prone and imprecise. Leukemia detection methods consist of pre-processing, segmentation, features extraction, and classification. In this article, recent deep learning methodologies and challenges for leukemia detection are discussed. These methods are helpful to examine the microscopic blood smears images and for the detection of leukemia more accurately.
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Affiliation(s)
- Saba Saleem
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Pakistan
| | - Javaria Amin
- Department of Computer Science, University of Wah, Wah Cantt, Pakistan
| | - Muhammad Sharif
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Pakistan
| | | | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, Kristiansand, Norway; Department of Electrical and Computer Engineering, Lebanese American University, Byblos, Lebanon
| | - Amir H Gandomi
- Faculty of Engineering & Information Technology, University of Technology Sydney, Ultimo, NSW, 2007, Australia.
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23
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Shaukat N, Amin J, Sharif M, Azam F, Kadry S, Krishnamoorthy S. Three-Dimensional Semantic Segmentation of Diabetic Retinopathy Lesions and Grading Using Transfer Learning. J Pers Med 2022; 12:jpm12091454. [PMID: 36143239 PMCID: PMC9501488 DOI: 10.3390/jpm12091454] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Revised: 08/18/2022] [Accepted: 08/20/2022] [Indexed: 11/23/2022] Open
Abstract
Diabetic retinopathy (DR) is a drastic disease. DR embarks on vision impairment when it is left undetected. In this article, learning-based techniques are presented for the segmentation and classification of DR lesions. The pre-trained Xception model is utilized for deep feature extraction in the segmentation phase. The extracted features are fed to Deeplabv3 for semantic segmentation. For the training of the segmentation model, an experiment is performed for the selection of the optimal hyperparameters that provided effective segmentation results in the testing phase. The multi-classification model is developed for feature extraction using the fully connected (FC) MatMul layer of efficient-net-b0 and pool-10 of the squeeze-net. The extracted features from both models are fused serially, having the dimension of N × 2020, amidst the best N × 1032 features chosen by applying the marine predictor algorithm (MPA). The multi-classification of the DR lesions into grades 0, 1, 2, and 3 is performed using neural network and KNN classifiers. The proposed method performance is validated on open access datasets such as DIARETDB1, e-ophtha-EX, IDRiD, and Messidor. The obtained results are better compared to those of the latest published works.
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Affiliation(s)
- Natasha Shaukat
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 47010, Pakistan
| | - Javeria Amin
- Department of Computer Science, University of Wah, Wah Campus, Wah Cantt 47010, Pakistan
| | - Muhammad Sharif
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 47010, Pakistan
- Correspondence: (M.S.); (S.K.)
| | - Faisal Azam
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 47010, Pakistan
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, 4612 Kristiansand, Norway
| | - Sujatha Krishnamoorthy
- Zhejiang Bioinformatics International Science and Technology Cooperation Center, Wenzhou-Kean University, Wenzhou 325060, China
- Wenzhou Municipal Key Lab of Applied Biomedical and Biopharmaceutical Informatics, Wenzhou-Kean University, Wenzhou 325060, China
- Correspondence: (M.S.); (S.K.)
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24
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Minimally parametrized segmentation framework with dual metaheuristic optimisation algorithms and FCM for detection of anomalies in MR brain images. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103866] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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25
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Akyol K. Automatic classification of brain magnetic resonance images with hypercolumn deep features and machine learning. Phys Eng Sci Med 2022; 45:935-947. [PMID: 35997926 DOI: 10.1007/s13246-022-01166-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 07/24/2022] [Indexed: 11/26/2022]
Abstract
Brain tumours are life-threatening and their early detection is very important in a patient's life. At the present time, magnetic resonance imaging is one of the methods used for detecting brain tumours. Expert decision support systems serve specialist physicians to make more accurate diagnoses by minimizing the errors arising from their subjective opinions in real clinical settings. The model proposed in this study detects important keypoints and then extracts hypercolumn deep features of these keypoints from some convolutional layers of VGG16. Finally, Random Forest and Logistic Regression classifiers are fed with a set of these features. Random Forest classifier offered the best performance with 94.51% accuracy, 91.61% sensitivity, 8.39% false-negative rate, 97.42% specificity, and 97.29% precision using fivefold cross-validation in this study. Consequently, it is thought that the proposed model could contribute to field experts by integrating it into computer-aided brain magnetic resonance imaging diagnosis systems.
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Affiliation(s)
- Kemal Akyol
- Department of Computer Engineering, Kastamonu University, Kastamonu, Turkey.
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26
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Kataria P, Dogra A, Sharma T, Goyal B. Trends in DNN Model Based Classification and Segmentation of Brain Tumor Detection. Open Neuroimag J 2022. [DOI: 10.2174/18744400-v15-e2206290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Background:
Due to the complexities of scrutinizing and diagnosing brain tumors from MR images, brain tumor analysis has become one of the most indispensable concerns. Characterization of a brain tumor before any treatment, such as radiotherapy, requires decisive treatment planning and accurate implementation. As a result, early detection of brain tumors is imperative for better clinical outcomes and subsequent patient survival.
Introduction:
Brain tumor segmentation is a crucial task in medical image analysis. Because of tumor heterogeneity and varied intensity patterns, manual segmentation takes a long time, limiting the use of accurate quantitative interventions in clinical practice. Automated computer-based brain tumor image processing has become more valuable with technological advancement. With various imaging and statistical analysis tools, deep learning algorithms offer a viable option to enable health care practitioners to rule out the disease and estimate the growth.
Methods:
This article presents a comprehensive evaluation of conventional machine learning models as well as evolving deep learning techniques for brain tumor segmentation and classification.
Conclusion:
In this manuscript, a hierarchical review has been presented for brain tumor segmentation and detection. It is found that the segmentation methods hold a wide margin of improvement in the context of the implementation of adaptive thresholding and segmentation methods, the feature training and mapping requires redundancy correction, the input data training needs to be more exhaustive and the detection algorithms are required to be robust in terms of handling online input data analysis/tumor detection.
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Kalpana R, Bennet MA, Rahmani AW. Metaheuristic Optimization-Driven Novel Deep Learning Approach for Brain Tumor Segmentation. BIOMED RESEARCH INTERNATIONAL 2022; 2022:2980691. [PMID: 36033583 PMCID: PMC9410780 DOI: 10.1155/2022/2980691] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/21/2022] [Accepted: 07/27/2022] [Indexed: 01/10/2023]
Abstract
Brain tumor has the foremost distinguished etiology of high morality. Neoplasm, a categorization of brain tumors, is very operative in distinguishing and determining the tumor's exact location in the brain. Magnetic resonance imaging (MRI) is an efficient noninvasive technique for the anatomical examination of brain tumors. Growth tissues have a distinguishable look in MRI pictures in order that they are unit-wide used for brain tumor feature extraction. The existing research algorithms for brain tumors have some limitations such as different qualities, low sensitivity, and diagnosing the tumor at its stages. In this particular piece of research, an innovative method of optimization known as the procedure for lightning attachment algorithm (PLA) is used, and for the purpose of classification, a CNN model known as DenseNet-169 is applied. PLA was used in order to optimize the growth, and a network model known as the DenseNet-169 model was utilized in order to extract the various growth-optimization choices. First, the MR images of the brain were preprocessed to remove any outliers. Next, the Dense Net-169 CNN model was used to extract network choices from the MR images. In addition, it is used to execute the function of a classifier in order to identify the growth as either an aberrant growth or a traditional growth. In addition, the publicly benchmarked datasets that are widely utilized have validated the algorithmic rule that was granted. The planned system demonstrates the satisfactory accuracy in getting ready to on the dataset and outperforms many of the notable current techniques.
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Affiliation(s)
- R. Kalpana
- Department of Electronics and Communication Engineering, VelTech Rangarajan Dr. Sagunthala R&D Institute of Science and Technology, Avadi, Chennai, Tamil Nadu 600062, India
| | - M. Anto Bennet
- Department of Electronics and Communication Engineering, VelTech Rangarajan Dr. Sagunthala R&D Institute of Science and Technology, Avadi, Chennai, Tamil Nadu 600062, India
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Sharif MI, Khan MA, Alhussein M, Aurangzeb K, Raza M. A decision support system for multimodal brain tumor classification using deep learning. COMPLEX INTELL SYST 2022; 8:3007-3020. [DOI: 10.1007/s40747-021-00321-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Accepted: 03/01/2021] [Indexed: 02/08/2023]
Abstract
AbstractMulticlass classification of brain tumors is an important area of research in the field of medical imaging. Since accuracy is crucial in the classification, a number of techniques are introduced by computer vision researchers; however, they still face the issue of low accuracy. In this article, a new automated deep learning method is proposed for the classification of multiclass brain tumors. To realize the proposed method, the Densenet201 Pre-Trained Deep Learning Model is fine-tuned and later trained using a deep transfer of imbalanced data learning. The features of the trained model are extracted from the average pool layer, which represents the very deep information of each type of tumor. However, the characteristics of this layer are not sufficient for a precise classification; therefore, two techniques for the selection of features are proposed. The first technique is Entropy–Kurtosis-based High Feature Values (EKbHFV) and the second technique is a modified genetic algorithm (MGA) based on metaheuristics. The selected features of the GA are further refined by the proposed new threshold function. Finally, both EKbHFV and MGA-based features are fused using a non-redundant serial-based approach and classified using a multiclass SVM cubic classifier. For the experimental process, two datasets, including BRATS2018 and BRATS2019, are used without increase and have achieved an accuracy of more than 95%. The precise comparison of the proposed method with other neural nets shows the significance of this work.
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Machine Learning Prediction of Turning Precision Using Optimized XGBoost Model. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12157739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The present study proposes a machine learning approach for optimizing turning parameters in such a way as to maximize the turning precision. The Taguchi method is first employed to optimize the turning parameters, and the experimental results are then used to train three machine learning models to predict the turning precision for any given values of the input parameters. The model which shows the best prediction performance (XGBoost) is further improved through the use of a synthetic minority over-sampling technique for regression with Gaussian noise (SMOGN) and four different optimization algorithms, including center particle swarm optimization (CPSO). Finally, the performances of the various models are evaluated and compared using the leave-one-out cross-validation technique. The experimental results show that the XGBoost model, combined with SMOGN and CPSO, provides the best performance, and is a useful tool for predicting the machining error of turning. The method can also reduce the cost of obtaining the optimized turning parameters corresponding with the predicted machining error.
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Botmart T, Sabir Z, Asif Zahoor Raja M, weera W, Ali MR, Sadat R, Aly AA, Alosaimy, Saad A. A hybrid swarming computing approach to solve the biological nonlinear Leptospirosis system. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103789] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Yunus U, Amin J, Sharif M, Yasmin M, Kadry S, Krishnamoorthy S. Recognition of Knee Osteoarthritis (KOA) Using YOLOv2 and Classification Based on Convolutional Neural Network. Life (Basel) 2022; 12:1126. [PMID: 36013305 PMCID: PMC9410095 DOI: 10.3390/life12081126] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 07/02/2022] [Accepted: 07/05/2022] [Indexed: 12/23/2022] Open
Abstract
Knee osteoarthritis (KOA) is one of the deadliest forms of arthritis. If not treated at an early stage, it may lead to knee replacement. That is why early diagnosis of KOA is necessary for better treatment. Manually KOA detection is a time-consuming and error-prone task. Computerized methods play a vital role in accurate and speedy detection. Therefore, the classification and localization of the KOA method are proposed in this work using radiographic images. The two-dimensional radiograph images are converted into three-dimensional and LBP features are extracted having the dimension of N × 59 out of which the best features of N × 55 are selected using PCA. The deep features are also extracted using Alex-Net and Dark-net-53 with the dimensions of N × 1024 and N × 4096, respectively, where N represents the number of images. Then, N × 1000 features are selected individually from both models using PCA. Finally, the extracted features are fused serially with the dimension of N × 2055 and passed to the classifiers on a 10-fold cross-validation that provides an accuracy of 90.6% for the classification of KOA grades. The localization model is proposed with the combination of an open exchange neural network (ONNX) and YOLOv2 that is trained on the selected hyper-parameters. The proposed model provides 0.98 mAP for the localization of classified images. The experimental analysis proves that the presented framework provides better results as compared to existing works.
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Affiliation(s)
- Usman Yunus
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 47010, Pakistan; (U.Y.); (M.S.); (M.Y.)
| | - Javeria Amin
- Department of Computer Science, University of Wah, Wah Cantt 47010, Pakistan;
| | - Muhammad Sharif
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 47010, Pakistan; (U.Y.); (M.S.); (M.Y.)
| | - Mussarat Yasmin
- Department of Computer Science, COMSATS University Islamabad, Wah Campus, Wah Cantt 47010, Pakistan; (U.Y.); (M.S.); (M.Y.)
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, 4612 Kristiansand, Norway;
| | - Sujatha Krishnamoorthy
- Zhejiang Bioinformatics International Science and Technology Cooperation Center, Wenzhou-Kean University, Wenzhou 325060, China
- Wenzhou Municipal Key Lab of Applied Biomedical and Biopharmaceutical Informatics, Wenzhou-Kean University, Wenzhou 325060, China
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A new brain tumor diagnostic model: Selection of textural feature extraction algorithms and convolution neural network features with optimization algorithms. Comput Biol Med 2022; 148:105857. [PMID: 35868050 DOI: 10.1016/j.compbiomed.2022.105857] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 06/17/2022] [Accepted: 06/17/2022] [Indexed: 11/22/2022]
Abstract
Brain tumors are one of the most dangerous diseases that affect human health and maybe result in death. Detection of brain tumors can be made by using biopsy. However, this is an invasive procedure. It is an extremely dangerous procedure because it can cause bleeding and damage certain brain functions. For this reason, the type and the stage of the disease can be determined after a detailed examination by medical imaging techniques made by field experts. In this study, a computer-based hybrid diagnostic model with high accuracy rate is proposed to diagnose normal brain and brain having types of tumors from brain images obtained by magnetic resonance imaging (MRI) techniques. This diagnostic model consists of three stages. In the first stage, the features of the images were obtained with two different traditional methods, which are widely used in the literature, and the results were examined. In the second stage, different convolutional neural networks that can learn comprehensive information about images were used and the results were tested by obtaining the features of the images. In the third stage, all the feature sets that are obtained were combined, and genetic algorithms, particle swarm optimization technique and artificial bee colony optimization techniques were used for feature selection. The common features of the optimization techniques were used only once. Thus, metaheuristic optimization algorithms were used for feature selection and distinctive features of the images appeared. Feature sets were classified using support vector machine kernels. The proposed diagnostic model is better than the directly used methods with an accuracy rate of 98.22%. Consequently, this method can also be used in clinic service to diagnose tumor by using images of brain MRI.
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Zhang T, Zhang J, Xue T, Rashid MH. A Brain Tumor Image Segmentation Method Based on Quantum Entanglement and Wormhole Behaved Particle Swarm Optimization. Front Med (Lausanne) 2022; 9:794126. [PMID: 35620714 PMCID: PMC9127532 DOI: 10.3389/fmed.2022.794126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 03/17/2022] [Indexed: 12/26/2022] Open
Abstract
Purpose Although classical techniques for image segmentation may work well for some images, they may perform poorly or not work at all for others. It often depends on the properties of the particular image segmentation task under study. The reliable segmentation of brain tumors in medical images represents a particularly challenging and essential task. For example, some brain tumors may exhibit complex so-called “bottle-neck” shapes which are essentially circles with long indistinct tapering tails, known as a “dual tail.” Such challenging conditions may not be readily segmented, particularly in the extended tail region or around the so-called “bottle-neck” area. In those cases, existing image segmentation techniques often fail to work well. Methods Existing research on image segmentation using wormhole and entangle theory is first analyzed. Next, a random positioning search method that uses a quantum-behaved particle swarm optimization (QPSO) approach is improved by using a hyperbolic wormhole path measure for seeding and linking particles. Finally, our novel quantum and wormhole-behaved particle swarm optimization (QWPSO) is proposed. Results Experimental results show that our QWPSO algorithm can better cluster complex “dual tail” regions into groupings with greater adaptability than conventional QPSO. Experimental work also improves operational efficiency and segmentation accuracy compared with current competing reference methods. Conclusion Our QWPSO method appears extremely promising for isolating smeared/indistinct regions of complex shape typical of medical image segmentation tasks. The technique is especially advantageous for segmentation in the so-called “bottle-neck” and “dual tail”-shaped regions appearing in brain tumor images.
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Affiliation(s)
- Tianchi Zhang
- School of Information Science and Engineering, Chongqing Jiaotong University, Chongqing, China
| | - Jing Zhang
- School of Information Science and Engineering, University of Jinan, Jinan, China.,Shandong Provincial Key Laboratory of Network-Based Intelligent Computing, Jinan, China
| | - Teng Xue
- School of Information Science and Engineering, University of Jinan, Jinan, China.,Shandong Provincial Key Laboratory of Network-Based Intelligent Computing, Jinan, China
| | - Mohammad Hasanur Rashid
- School of Information Science and Engineering, University of Jinan, Jinan, China.,Shandong Provincial Key Laboratory of Network-Based Intelligent Computing, Jinan, China
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34
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A secure two-qubit quantum model for segmentation and classification of brain tumor using MRI images based on blockchain. Neural Comput Appl 2022. [DOI: 10.1007/s00521-022-07388-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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35
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Amin J, Anjum MA, Sharif A, Sharif MI. A modified classical-quantum model for diabetic foot ulcer classification. INTELLIGENT DECISION TECHNOLOGIES 2022. [DOI: 10.3233/idt-210017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
DFU is one of the most spreading diseases now day approximately more than one million patients suffer due to this disease. Undergo the procedure of removing their lower limb of the body due to the reason that they are not able enough to recognize this disease and get proper treatment from the doctors or physicians. Therefore, there is an urgent need of developing a Computer-Aided Design (CAD) system that can easily detect Diabetic Foot Ulcer (DFU). Therefore, in this study, a pre-trained ResNet-50 model and modified classical-quantum model are utilized for diabetic foot ulcer classification into corresponding classes such as normal/abnormal and ischaemia/non-ischaemia. The presented approach achieved classification accuracy is greater than 0.90 on abnormal/normal, ischaemia/non-ischaemia, and infection and non-infection foot images. The reported results depict that the proposed method outperformed as compared to recently published work in the domain of diabetic foot ulcers.
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Affiliation(s)
- Javeria Amin
- Department of Computer Science, University of Wah, Wah Cantt, Pakistan
| | | | - Abida Sharif
- Department of Computer Science, COMSATS University Islamabad, Vehari Campus, Pakistan
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Amin J, Anjum MA, Sharif M, Kadry S, Nadeem A, Ahmad SF. Liver Tumor Localization Based on YOLOv3 and 3D-Semantic Segmentation Using Deep Neural Networks. Diagnostics (Basel) 2022; 12:diagnostics12040823. [PMID: 35453870 PMCID: PMC9025116 DOI: 10.3390/diagnostics12040823] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 03/18/2022] [Accepted: 03/22/2022] [Indexed: 12/17/2022] Open
Abstract
Worldwide, more than 1.5 million deaths are occur due to liver cancer every year. The use of computed tomography (CT) for early detection of liver cancer could save millions of lives per year. There is also an urgent need for a computerized method to interpret, detect and analyze CT scans reliably, easily, and correctly. However, precise segmentation of minute tumors is a difficult task because of variation in the shape, intensity, size, low contrast of the tumor, and the adjacent tissues of the liver. To address these concerns, a model comprised of three parts: synthetic image generation, localization, and segmentation, is proposed. An optimized generative adversarial network (GAN) is utilized for generation of synthetic images. The generated images are localized by using the improved localization model, in which deep features are extracted from pre-trained Resnet-50 models and fed into a YOLOv3 detector as an input. The proposed modified model localizes and classifies the minute liver tumor with 0.99 mean average precision (mAp). The third part is segmentation, in which pre-trained Inceptionresnetv2 employed as a base-Network of Deeplabv3 and subsequently is trained on fine-tuned parameters with annotated ground masks. The experiments reflect that the proposed approach has achieved greater than 95% accuracy in the testing phase and it is proven that, in comparison to the recently published work in this domain, this research has localized and segmented the liver and minute liver tumor with more accuracy.
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Affiliation(s)
- Javaria Amin
- Department of Computer Science, University of Wah, Wah Cantt 47040, Pakistan;
| | | | - Muhammad Sharif
- Department of Computer Science, Comsats University Islamabad, Wah Campus, Wah Cantt 47040, Pakistan;
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, 4609 Kristiansand, Norway
- Correspondence:
| | - Ahmed Nadeem
- Department of Pharmacology & Toxicology, College of Pharmacy, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia; (A.N.); (S.F.A.)
| | - Sheikh F. Ahmad
- Department of Pharmacology & Toxicology, College of Pharmacy, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia; (A.N.); (S.F.A.)
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Sathies Kumar T, Arun C, Ezhumalai P. An approach for brain tumor detection using optimal feature selection and optimized deep belief network. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103440] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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38
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Naeem A, Anees T, Naqvi RA, Loh WK. A Comprehensive Analysis of Recent Deep and Federated-Learning-Based Methodologies for Brain Tumor Diagnosis. J Pers Med 2022; 12:275. [PMID: 35207763 PMCID: PMC8880689 DOI: 10.3390/jpm12020275] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 02/05/2022] [Accepted: 02/09/2022] [Indexed: 12/12/2022] Open
Abstract
Brain tumors are a deadly disease with a high mortality rate. Early diagnosis of brain tumors improves treatment, which results in a better survival rate for patients. Artificial intelligence (AI) has recently emerged as an assistive technology for the early diagnosis of tumors, and AI is the primary focus of researchers in the diagnosis of brain tumors. This study provides an overview of recent research on the diagnosis of brain tumors using federated and deep learning methods. The primary objective is to explore the performance of deep and federated learning methods and evaluate their accuracy in the diagnosis process. A systematic literature review is provided, discussing the open issues and challenges, which are likely to guide future researchers working in the field of brain tumor diagnosis.
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Affiliation(s)
- Ahmad Naeem
- Department of Computer Science, University of Management and Technology, Lahore 54000, Pakistan;
| | - Tayyaba Anees
- Department of Software Engineering, University of Management and Technology, Lahore 54000, Pakistan;
| | - Rizwan Ali Naqvi
- Department of Unmanned Vehicle Engineering, Sejong University, Seoul 05006, Korea
| | - Woong-Kee Loh
- School of Computing, Gachon University, Seongnam 13120, Korea
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39
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Applying particle swarm optimization-based decision tree classifier for wart treatment selection. COMPLEX INTELL SYST 2022. [DOI: 10.1007/s40747-021-00348-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
AbstractWart is a disease caused by human papillomavirus with common and plantar warts as general forms. Commonly used methods to treat warts are immunotherapy and cryotherapy. The selection of proper treatment is vital to cure warts. This paper establishes a classification and regression tree (CART) model based on particle swarm optimisation to help patients choose between immunotherapy and cryotherapy. The proposed model can accurately predict the response of patients to the two methods. Using an improved particle swarm algorithm (PSO) to optimise the parameters of the model instead of the traditional pruning algorithm, a more concise and more accurate model is obtained. Two experiments are conducted to verify the feasibility of the proposed model. On the hand, five benchmarks are used to verify the performance of the improved PSO algorithm. On the other hand, the experiment on two wart datasets is conducted. Results show that the proposed model is effective. The proposed method classifies better than k-nearest neighbour, C4.5 and logistic regression. It also performs better than the conventional optimisation method for the CART algorithm. Moreover, the decision tree model established in this study is interpretable and understandable. Therefore, the proposed model can help patients and doctors reduce the medical cost and improve the quality of healing operation.
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Swarm Intelligence Procedures Using Meyer Wavelets as a Neural Network for the Novel Fractional Order Pantograph Singular System. FRACTAL AND FRACTIONAL 2021. [DOI: 10.3390/fractalfract5040277] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The purpose of the current investigation is to find the numerical solutions of the novel fractional order pantograph singular system (FOPSS) using the applications of Meyer wavelets as a neural network. The FOPSS is presented using the standard form of the Lane–Emden equation and the detailed discussions of the singularity, shape factor terms along with the fractional order forms. The numerical discussions of the FOPSS are described based on the fractional Meyer wavelets (FMWs) as a neural network (NN) with the optimization procedures of global/local search procedures of particle swarm optimization (PSO) and interior-point algorithm (IPA), i.e., FMWs-NN-PSOIPA. The FMWs-NN strength is pragmatic and forms a merit function based on the differential system and the initial conditions of the FOPSS. The merit function is optimized, using the integrated capability of PSOIPA. The perfection, verification and substantiation of the FOPSS using the FMWs is pragmatic for three cases through relative investigations from the true results in terms of stability and convergence. Additionally, the statics’ descriptions further authorize the presentation of the FMWs-NN-PSOIPA in terms of reliability and accuracy.
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Abstract
Image processing is one example of digital media. It consists of a set of operations to handle an image. Image segmentation is among its main important operations. It involves dividing the image into several parts or regions to extract vital information or identify relevant objects. Many techniques of artificial intelligence, including bio-inspired algorithms, have been used in this regard. This article collected the state-of-the-art studies presenting image-segmentation techniques combined with four bio-inspired algorithms including particle swarm optimization (PSO), genetic algorithms (GA), ant colony optimization (ACO), and artificial bee colonies (ABC). This research work aimed at showing the importance of image segmentation and its combination with these algorithms. This article provides insights on how these algorithms are adapted to image-segmentation combinatorial problems, which assist researchers to start the first hands-on application. It also discusses their setting parameters and the highly used algorithms such as PSO, GA, ACO, and ABC. The article presents new research directions in image segmentation based on bio-inspired algorithms.
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Abstract
AbstractBrain tumor occurs owing to uncontrolled and rapid growth of cells. If not treated at an initial phase, it may lead to death. Despite many significant efforts and promising outcomes in this domain, accurate segmentation and classification remain a challenging task. A major challenge for brain tumor detection arises from the variations in tumor location, shape, and size. The objective of this survey is to deliver a comprehensive literature on brain tumor detection through magnetic resonance imaging to help the researchers. This survey covered the anatomy of brain tumors, publicly available datasets, enhancement techniques, segmentation, feature extraction, classification, and deep learning, transfer learning and quantum machine learning for brain tumors analysis. Finally, this survey provides all important literature for the detection of brain tumors with their advantages, limitations, developments, and future trends.
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Saeidifar M, Yazdi M, Zolghadrasli A. Performance Improvement in Brain Tumor Detection in MRI Images Using a Combination of Evolutionary Algorithms and Active Contour Method. J Digit Imaging 2021; 34:1209-1224. [PMID: 34561783 DOI: 10.1007/s10278-021-00514-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 08/23/2021] [Accepted: 08/31/2021] [Indexed: 10/20/2022] Open
Abstract
The process of treating brain cancer depends on the experience and knowledge of the physician, which may be associated with eye errors or may vary from person to person. For this reason, it is important to utilize an automatic tumor detection algorithm to assist radiologists and physicians for brain tumor diagnosis. The aim of the present study is to automatically detect the location of the tumor in a brain MRI image with high accuracy. For this end, in the proposed algorithm, first, the skull is separated from the brain using morphological operators. The image is then segmented by six evolutionary algorithms, i.e., Particle Swarm Optimization (PSO), Artificial Bee Colony (ABC), Genetic Algorithm (GA), Differential Evolution (DE), Harmony Search (HS), and Gray Wolf Optimization (GWO), as well as two other frequently-used techniques in the literature, i.e., K-means and Otsu thresholding algorithms. Afterwards, the tumor area is isolated from the brain using the four features extracted from the main tumor. Evaluation of the segmented area revealed that the PSO has the best performance compared with the other approaches. The segmented results of the PSO are then used as the initial curve for the Active contour to precisely specify the tumor boundaries. The proposed algorithm is applied on fifty images with two different types of tumors. Experimental results on T1-weighted brain MRI images show a better performance of the proposed algorithm compared to other evolutionary algorithms, K-means, and Otsu thresholding methods.
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Affiliation(s)
- Mahtab Saeidifar
- School of Electrical and Computer Engineering, Shiraz University, Shiraz, Iran
| | - Mehran Yazdi
- School of Electrical and Computer Engineering, Shiraz University, Shiraz, Iran.
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Fawzi A, Achuthan A, Belaton B. Brain Image Segmentation in Recent Years: A Narrative Review. Brain Sci 2021; 11:1055. [PMID: 34439674 PMCID: PMC8392552 DOI: 10.3390/brainsci11081055] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 07/10/2021] [Accepted: 07/19/2021] [Indexed: 11/17/2022] Open
Abstract
Brain image segmentation is one of the most time-consuming and challenging procedures in a clinical environment. Recently, a drastic increase in the number of brain disorders has been noted. This has indirectly led to an increased demand for automated brain segmentation solutions to assist medical experts in early diagnosis and treatment interventions. This paper aims to present a critical review of the recent trend in segmentation and classification methods for brain magnetic resonance images. Various segmentation methods ranging from simple intensity-based to high-level segmentation approaches such as machine learning, metaheuristic, deep learning, and hybridization are included in the present review. Common issues, advantages, and disadvantages of brain image segmentation methods are also discussed to provide a better understanding of the strengths and limitations of existing methods. From this review, it is found that deep learning-based and hybrid-based metaheuristic approaches are more efficient for the reliable segmentation of brain tumors. However, these methods fall behind in terms of computation and memory complexity.
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Affiliation(s)
| | - Anusha Achuthan
- School of Computer Sciences, Universiti Sains Malaysia, Gelugor 11800, Malaysia; (A.F.); (B.B.)
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45
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Hashemzehi R, Seyyed Mahdavi SJ, Kheirabadi M, Kamel SR. Y-net: a reducing gaussian noise convolutional neural network for MRI brain tumor classification with NADE concatenation. Biomed Phys Eng Express 2021; 7. [PMID: 34198284 DOI: 10.1088/2057-1976/ac107b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 07/01/2021] [Indexed: 11/11/2022]
Abstract
Brain tumors are among the most serious cancers that can have a negative impact on a person's quality of life. The magnetic resonance imaging (MRI) analysis detects abnormal cell growth in the skull. Recently, machine learning models such as artificial neural networks have been used to detect brain tumors more quickly. To classify brain tumors, this research introduces the Y-net, a new convolutional neural network (CNN) based on the convolutional U-net architecture. We apply a NADE concatenation method in pre-processing the MR images for enhanced Y-net performance. We put our approach to the test using two MRI datasets of brain tumors. The first dataset contains three different types of brain tumors, while the second dataset includes a separate category for healthy brains. We show that our model is resistant to white noise and can obtain excellent classification accuracy with a limited number of medical images.
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Affiliation(s)
- Raheleh Hashemzehi
- Department of Computer Science, Neyshabur Branch, Islamic Azad University, Neyshabur, Iran
| | | | - Maryam Kheirabadi
- Department of Computer Science, Neyshabur Branch, Islamic Azad University, Neyshabur, Iran
| | - Seyed Reza Kamel
- Department of Software Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
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Kushwah R, Kaushik M, Chugh K. A modified whale optimization algorithm to overcome delayed convergence in artificial neural networks. Soft comput 2021. [DOI: 10.1007/s00500-021-05983-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Nazir M, Shakil S, Khurshid K. Role of deep learning in brain tumor detection and classification (2015 to 2020): A review. Comput Med Imaging Graph 2021; 91:101940. [PMID: 34293621 DOI: 10.1016/j.compmedimag.2021.101940] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 04/14/2021] [Accepted: 05/10/2021] [Indexed: 02/06/2023]
Abstract
During the last decade, computer vision and machine learning have revolutionized the world in every way possible. Deep Learning is a sub field of machine learning that has shown remarkable results in every field especially biomedical field due to its ability of handling huge amount of data. Its potential and ability have also been applied and tested in the detection of brain tumor using MRI images for effective prognosis and has shown remarkable performance. The main objective of this research work is to present a detailed critical analysis of the research and findings already done to detect and classify brain tumor through MRI images in the recent past. This analysis is specifically beneficial for the researchers who are experts of deep learning and are interested to apply their expertise for brain tumor detection and classification. As a first step, a brief review of the past research papers using Deep Learning for brain tumor classification and detection is carried out. Afterwards, a critical analysis of Deep Learning techniques proposed in these research papers (2015-2020) is being carried out in the form of a Table. Finally, the conclusion highlights the merits and demerits of deep neural networks. The results formulated in this paper will provide a thorough comparison of recent studies to the future researchers, along with the idea of the effectiveness of various deep learning approaches. We are confident that this study would greatly assist in advancement of brain tumor research.
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Affiliation(s)
- Maria Nazir
- iVision Lab, Electrical Engineering Department, Institute of Space Technology, Islamabad, Pakistan.
| | - Sadia Shakil
- iVision Lab, Electrical Engineering Department, Institute of Space Technology, Islamabad, Pakistan; Turner Institute for Brain and Mental Health, Monash University, Melbourne, Australia
| | - Khurram Khurshid
- iVision Lab, Electrical Engineering Department, Institute of Space Technology, Islamabad, Pakistan
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Kaur B, Goyal B, Daniel E. A survey on Machine learning based Medical Assistive systems in Current Oncological Sciences. Curr Med Imaging 2021; 18:445-459. [PMID: 33596810 DOI: 10.2174/1573405617666210217154446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 12/04/2020] [Accepted: 01/15/2021] [Indexed: 11/22/2022]
Abstract
BACKGROUND Cancer is one of the life threatening disease which is affecting a large number of population worldwide. The cancer cells multiply inside the body without showing much symptoms on the surface of the skin thereby making it difficult to predict and detect at the onset of disease. Many organizations are working towards automating the process of cancer detection with minimal false detection rates. INTRODUCTION The machine learning algorithms serve to be a promising alternative to support health care practitioners to rule out the disease and predict the growth with various imaging and statistical analysis tools. The medical practitioners are utilizing the output of these algorithms to diagnose and design the course of treatment. These algorithms are capable of finding out the risk level of the patient and can reduce the mortality rate concerning to cancer disease. METHOD This article presents the existing state of art techniques for identifying cancer affecting human organs based on machine learning models. The supported set of imaging operations are also elaborated for each type of Cancer. CONCLUSION The CAD tools are the aid for the diagnostic radiologists for preliminary investigations and detecting the nature of tumor cells.
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Affiliation(s)
| | | | - Ebenezer Daniel
- City of Hope, National Medical Centre, California. United States
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QAIS-DSNN: Tumor Area Segmentation of MRI Image with Optimized Quantum Matched-Filter Technique and Deep Spiking Neural Network. BIOMED RESEARCH INTERNATIONAL 2021; 2021:6653879. [PMID: 33542920 PMCID: PMC7843186 DOI: 10.1155/2021/6653879] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 12/29/2020] [Accepted: 01/06/2021] [Indexed: 01/21/2023]
Abstract
Tumor segmentation in brain MRI images is a noted process that can make the tumor easier to diagnose and lead to effective radiotherapy planning. Providing and building intelligent medical systems can be considered as an aid for physicians. In many cases, the presented methods' reliability is at a high level, and such systems are used directly. In recent decades, several methods of segmentation of various images, such as MRI, CT, and PET, have been proposed for brain tumors. Advanced brain tumor segmentation has been a challenging issue in the scientific community. The reason for this is the existence of various tumor dimensions with disproportionate boundaries in medical imaging. This research provides an optimized MRI segmentation method to diagnose tumors. It first offers a preprocessing approach to reduce noise with a new method called Quantum Matched-Filter Technique (QMFT). Then, the deep spiking neural network (DSNN) is implemented for segmentation using the conditional random field structure. However, a new algorithm called the Quantum Artificial Immune System (QAIS) is used in its SoftMax layer due to its slowness and nonsegmentation and the identification of suitable features for selection and extraction. The proposed approach, called QAIS-DSNN, has a high ability to segment and distinguish brain tumors from MRI images. The simulation results using the BraTS2018 dataset show that the accuracy of the proposed approach is 98.21%, average error-squared rate is 0.006, signal-to-noise ratio is 97.79 dB, and lesion structure criteria including the tumor nucleus are 80.15%. The improved tumor is 74.50%, and the entire tumor is 91.92%, which shows a functional advantage over similar previous methods. Also, the execution time of this method is 2.58 seconds.
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Martis RJ, Lin H, Javadi B, Fernandes SL, Yasmin M. Editorial of the special issue DLHI: Deep learning in medical imaging and healthinformatics. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2020.09.033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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