The complete genome assemblies of 19 insect pests of worldwide importance to agriculture

Spray performance of flexible shield canopy opener and rotor wind integrated boom-sprayer application in soybean: effects on droplet deposition distribution

BACKGROUND

Canopy density is high during mid-to-late soybean growth as a result of dense planting to improve yield, which seriously affects the control of pests and diseases. The dilemmas of difficult droplet penetration, nonuniform deposition, and droplet drift in field spraying remain challenges to the precise control of droplet distribution. This paper proposed a novel spraying application mode combined flexible shield canopy opener (FSCO) with rotor wind. The design of the key components of the new boom-spraying machine are described. The effects of the comparative spraying modes on spray deposition and droplet drift were studied in a field validation test to explore the feasibility of the novel spraying application.

RESULTS

The study found that droplet coverage inside the soybean canopy was significantly affected by spraying mode, rotor wind speed and opener depth. The spraying operation that used the FSCO and rotor wind integrated mode was optimal for droplet uniformity on the adaxial and abaxial surfaces of the canopy leaves, with droplet uniformity indices of 0.966 and 0.934, respectively. At a rotor wind speed of 6 m s-1 and opener depth of 15 cm, the soybean canopy droplet coverage uniformity effect achieved the highest composite score of 0.937. The spraying mode used in this study improved droplet coverage uniformity by 82.30% and droplet anti-drift performance improved by 99.73% compared to the conventional boom-spraying mode.

CONCLUSION

The study shows validity of the spraying mode combined FSCO with rotor wind to open dense canopy and improved droplet deposition uniformity in canopy and anti-drift performance. © 2024 Society of Chemical Industry.

CRISPR/Cas9-mediated knockout of scarlet gene produces eye color mutants in the soybean looper, Chrysodeixis includens

The CRISPR/Cas9 technology has greatly progressed research on non-model organisms, demonstrating successful applications in genome editing for various insects. However, its utilization in the case of the soybean looper, Chrysodeixis includens, a notable pest affecting soybean crops, has not been explored due to constraints such as limited genomic information and the embryonic microinjection technique. This study presents successful outcomes in generating heritable knockout mutants for a pigment transporter gene, scarlet, in C. includens through CRISPR/Cas9-mediated mutagenesis. The scarlet locus identified in the genome assembly of C. includens consists of 14 exons, with a coding sequence extending for 1,986 bp. Two single guide RNAs (sgRNAs) were designed to target the first exon of scarlet. Microinjection of these two sgRNAs along with the Cas9 protein into fresh embryos resulted in the successful production of variable phenotypes, particularly mutant eyes. The observed mutation rate accounted for about 16%. Genotype analysis revealed diverse indel mutations at the target site, presumably originating from double-strand breaks followed by the nonhomologous end joining repair, leading to a premature stop codon due to frame shift. Single-pair mating of the mutant moths produced G1 offspring, and the establishment of a homozygous mutant strain occurred in G2. The mutant moths exhibited lightly greenish or yellowish compound eyes in both sexes, confirming the involvement of scarlet in pigmentation in C. includens. Notably, the CRISPR/Cas9-mediated genome editing technique serves as a visible phenotypic marker, demonstrating its proof-of-concept applicability in C. includens, as other pigment transporter genes have been utilized as visible markers to establish genetic control for various insects. These results provide the first successful case that the CRISPR/Cas9 method effectively induces mutations in C. includes, an economically important soybean insect pest.

A Horizontally Transferred Plant Fatty Acid Desaturase Gene Steers Whitefly Reproduction

Polyunsaturated fatty acids (PUFAs) are essential nutrients for all living organisms. PUFA synthesis is mediated by Δ12 desaturases in plants and microorganisms, whereas animals usually obtain PUFAs through their diet. The whitefly Bemisia tabaci is an extremely polyphagous agricultural pest that feeds on phloem sap of many plants that do not always provide them with sufficient PUFAs. Here, a plant-derived Δ12 desaturase gene family BtFAD2 is characterized in B. tabaci and it shows that the BtFAD2-9 gene enables the pest to synthesize PUFAs, thereby significantly enhancing its fecundity. The role of BtFAD2-9 in reproduction is further confirmed by transferring the gene to Drosophila melanogaster, which also increases the fruit fly's reproduction. These findings reveal an extraordinary evolutionary scenario whereby a phytophagous insect acquired a family of plant genes that enables it to synthesize essential nutrients, thereby lessening its nutritional dependency and allowing it to feed and reproduce on many host plants.

A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements

Callosobruchus maculatus is a major agricultural pest of legume crops worldwide and an established model system in ecology and evolution. Yet, current molecular biological resources for this species are limited. Here, we employ Hi-C sequencing to generate a greatly improved genome assembly and we annotate its repetitive elements in a dedicated in-depth effort where we manually curate and classify the most abundant unclassified repeat subfamilies. We present a scaffolded chromosome-level assembly, which is 1.01 Gb in total length with 86% being contained within the 9 autosomes and the X chromosome. Repetitive sequences accounted for 70% of the total assembly. DNA transposons covered 18% of the genome, with the most abundant superfamily being Tc1-Mariner (9.75% of the genome). This new chromosome-level genome assembly of C. maculatus will enable future genetic and evolutionary studies not only of this important species but of beetles more generally.

Different myrosinases activate sequestered glucosinolates in larvae and adults of the horseradish flea beetle

β-Glucosidases play an important role in the chemical defense of many insects by hydrolyzing and thereby activating glucosylated pro-toxins that are either synthesized de novo or sequestered from the insect's diet. The horseradish flea beetle, Phyllotreta armoraciae, sequesters pro-toxic glucosinolates from its brassicaceous host plants and possesses endogenous β-thioglucosidase enzymes, known as myrosinases, for glucosinolate activation. Here, we identify three myrosinase genes in P. armoraciae (PaMyr) with distinct expression patterns during beetle ontogeny. By using RNA interference, we demonstrate that PaMyr1 is responsible for myrosinase activity in adults, whereas PaMyr2 is responsible for myrosinase activity in larvae. Compared to PaMyr1 and PaMyr2, PaMyr3 was only weakly expressed in our laboratory population, but may contribute to myrosinase activity in larvae. Silencing of PaMyr2 resulted in lower larval survival in a predation experiment and also reduced the breakdown of sequestered glucosinolates in uninjured larvae. This suggests that PaMyr2 is involved in both activated defense and the endogenous turnover of sequestered glucosinolates in P. armoraciae larvae. In activity assays with recombinant enzymes, PaMyr1 and PaMyr2 preferred different glucosinolates as substrates, which was consistent with the enzyme activities in crude protein extracts from adults and larvae, respectively. These differences were unexpected because larvae and adults sequester the same glucosinolates. Possible reasons for different myrosinase activities in Phyllotreta larvae and adults are discussed.

Transcriptomic investigation of the molecular mechanisms underlying resistance to the neonicotinoid thiamethoxam and the pyrethroid lambda-cyhalothrin in Euschistus heros (Hemiptera: Pentatomidae)

BACKGROUND

Laboratory-selected resistant strains of Euschistus heros to thiamethoxam (NEO) and lambda-cyhalothrin (PYR) were recently reported in Brazil. However, the mechanisms conferring resistance to these insecticides in E. heros remain unresolved. We utilized comparative transcriptome profiling and single nucleotide polymorphism (SNP) calling of susceptible and resistant strains of E. heros to investigate the molecular mechanism(s) underlying resistance.

RESULTS

The E. heros transcriptome was assembled, generating 91 673 transcripts with a mean length of 720 bp and N50 of 1795 bp. Comparative gene expression analysis between the susceptible (SUS) and NEO strains identified 215 significantly differentially expressed (DE) transcripts. DE transcripts associated with the xenobiotic metabolism were all up-regulated in the NEO strain. The comparative analysis of the SUS and PYR strains identified 204 DE transcripts, including an esterase (esterase FE4), a glutathione-S-transferase, an ABC transporter (ABCC1) and aquaporins that were up-regulated in the PYR strain. We identified 9588 and 15 043 nonsynonymous SNPs in the PYR and NEO strains. One of the SNPs (D70N) detected in the NEO strain occurs in a subunit (α5) of the nAChRs, the target site of neonicotinoid insecticides. Nevertheless, this residue position in α5 is not conserved among insects.

CONCLUSIONS

Neonicotinoid and pyrethroid resistance in laboratory-selected E. heros is associated with a potential metabolic resistance mechanism by the overexpression of proteins commonly involved in the three phases of xenobiotic metabolism. Together these findings provide insight into the potential basis of resistance in E. heros and will inform the development and implementation of resistance management strategies against this important pest. © 2023 Society of Chemical Industry.

Pest categorisation of Nilaparvata lugens

The EFSA Panel on Plant Health performed a pest categorisation of Nilaparvata lugens (Hemiptera: Delphacidae), the brown planthopper, for the European Union. N. lugens is widespread in Asia where it is native; it also occurs in Oceania where it is naturalised. N. lugens is not known to be present in the EU and is not listed in Annex II of Commission Implementing Regulation (EU) 2019/2072. It is a monophagous species and a major pest of rice (Oryza sativa). High populations of planthoppers cause leaves to initially turn orange yellow before becoming brown and dry and this is a condition called 'hopperburn' that kills the plant. N. lugens can also transmit plant viruses. It can complete 12 generations per year in tropical areas, where it resides year-round. N. lugens can undertake long-distance migration of up to 500 km from tropical areas to form transient populations in sub-tropical and temperate areas but due to low temperatures and absence of rice plants during the winter it does not establish in such areas. Entry to the EU via migration is unlikely given the distance from tropical rice growing areas. A possible but unlikely potential pathway is the import of infested rice seedlings, although we have no evidence that such trade exists. In the EU, rice is mainly planted from seed; when transplanted, it is sourced locally. N. lugens is very unlikely to survive year-round in the EU due to unsuitable climate and lack of hosts during the winter. Consequently, the pest is very unlikely to become established in the EU territory. Nevertheless, there are measures available to further reduce the likelihood of entry, establishment and spread of N. lugens within the EU. N. lugens does not satisfy the criteria that are within the remit of EFSA to assess for it to be regarded as a potential Union quarantine pest.