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Sellin A, Heinsoo K, Õunapuu-Pikas E, Reinthal T, Rohula-Okunev G, Rosenvald K, Tullus A. Shifts in resource allocation and aggravation of foliage development restrict the growth rate of Picea abies under increasing atmospheric humidity at high latitudes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 979:179452. [PMID: 40286619 DOI: 10.1016/j.scitotenv.2025.179452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Revised: 03/24/2025] [Accepted: 04/14/2025] [Indexed: 04/29/2025]
Abstract
Global warming is accompanied by rising precipitation, atmospheric water vapour content, and specific humidity at high latitudes. The rising amount and frequency of rainfall increase the air relative humidity (RH) on a local scale, especially within forest canopies. We studied the effects of artificially elevated environmental humidity (RH and soil moisture) on leaf gas exchange, stomatal responses and growth of young Picea abies trees at the Free Air Humidity Manipulation site in eastern Estonia. Manipulation did not affect the net assimilation rate (An) but affected the stomatal responses, net photosynthetic efficiency (An/ci), and photosynthetic water-use efficiency (WUE). At an elevated air humidity (H), trees exhibited the highest stomatal conductance (gS) and lowest WUE, An/ci, and stomatal sensitivity to air vapour pressure deficit compared to trees growing under ambient conditions (C) and elevated soil moisture (I). Compared to C trees, H trees demonstrated reduced height growth, foliage biomass, and enhanced investments in fine roots referring to worsening soil nutrient availability. Tree growth decline can be explained by (1) foliage development retardation, (2) resource allocation changes, causing a shift in the photosynthetic to non-photosynthetic tissue ratio in favour of the latter, and (3) impaired nutrient uptake from the soil. Changes in stomatal responses make trees grown in a higher RH more vulnerable to weather extremes, also limiting tree growth and forest productivity. Increasing precipitation with concomitant increase in atmospheric humidity at high latitudes counteracts the expected enhancement of tree growth due to climate warming in mesic northern forests.
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Affiliation(s)
- Arne Sellin
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.
| | - Katrin Heinsoo
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia; Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Eele Õunapuu-Pikas
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Taavi Reinthal
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | | | - Katrin Rosenvald
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Arvo Tullus
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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Yan C, Shi P, Yao W, Yu K, Niinemets Ü. A Nonlinear Fitting Method Provides Strong Support for Geometric Series of Stomatal Area in 12 Magnoliaceae Species. PLANTS (BASEL, SWITZERLAND) 2025; 14:893. [PMID: 40265783 PMCID: PMC11945771 DOI: 10.3390/plants14060893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 03/04/2025] [Accepted: 03/11/2025] [Indexed: 04/24/2025]
Abstract
Stomatal pore area and density determine the capacity for gas exchange between the leaf interior and the atmosphere. Stomatal area is given by the profile formed by two guard cells, and the cumulative stomatal area characterizes the area of leaf surface occupied by stomata. The areas of all stomata captured in a micrograph are sorted in ascending order to form a sequence, which is referred to as a sequence of stomatal area here. In total, 360 leaves of 12 Magnoliaceae species with 30 leaves for each species were sampled. For each leaf, two 662 μm × 444 μm fields of view (micrographs) of stomata were captured on the right leaf width axis. In each micrograph, the length and width of each stoma were measured, and the area of the stoma was determined using the product of stomatal length and width multiplied by a proportionality coefficient. Stomatal area sequences of Magnoliaceae in the constant field of view were found to follow a geometric series (GS). Prior studies estimated the common ratio of the GS as the mean of the quotients of any two adjacent terms, and estimated the first term as the mean of the first terms (i.e., the smallest stomatal area) represented by the quotient of each term and the estimated common ratio to a power of the order of the term minus 1, which is referred to as Method-1. However, it produced large prediction errors for some stomatal area sequences. In the present study, the nonlinear regression was used to fit the stomatal area sequences using the common ratio and the first term as two model parameters (Method-2). We compared the two methods using the mean absolute percent error (MAPE, ≤5% considered as a good fit) values of the 720 stomatal micrographs from the 12 Magnoliaceae species. The goodness of fit of Method-2 was better than that of Method-1 (52.4% MAPE values were ≤5% for Method-1 and 99.6% for Method-2). There were significant variations in the estimated common ratios, as well as the estimated first terms and the MAPE values across the 12 Magnoliaceae species, but overall, the interspecific differences in the MAPE values were small. We conclude that the GS hypothesis for the stomatal area sequences of the 12 Magnoliaceae species was further strengthened by the new method. This method further provides a valuable approach for the calculation of total stomatal area per unit leaf area.
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Affiliation(s)
- Chunxiu Yan
- National Key Laboratory of Smart Farm Technologies and Systems, College of Plant Protection, Northeast Agricultural University, Harbin 150030, China;
- Southern Modern Forestry Collaborative Innovation Center, College of Ecology and Environment, Nanjing Forestry University, #159 Longpan Road, Nanjing 210037, China; (W.Y.); (K.Y.)
| | - Peijian Shi
- Southern Modern Forestry Collaborative Innovation Center, College of Ecology and Environment, Nanjing Forestry University, #159 Longpan Road, Nanjing 210037, China; (W.Y.); (K.Y.)
| | - Weihao Yao
- Southern Modern Forestry Collaborative Innovation Center, College of Ecology and Environment, Nanjing Forestry University, #159 Longpan Road, Nanjing 210037, China; (W.Y.); (K.Y.)
| | - Kexin Yu
- Southern Modern Forestry Collaborative Innovation Center, College of Ecology and Environment, Nanjing Forestry University, #159 Longpan Road, Nanjing 210037, China; (W.Y.); (K.Y.)
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, 51006 Tartu, Estonia
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Yusuf AG, Al-Yahya FA, Saleh AA, Abdel-Ghany AM. Optimizing greenhouse microclimate for plant pathology: challenges and cooling solutions for pathogen control in arid regions. FRONTIERS IN PLANT SCIENCE 2025; 16:1492760. [PMID: 39980477 PMCID: PMC11839725 DOI: 10.3389/fpls.2025.1492760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Accepted: 01/13/2025] [Indexed: 02/22/2025]
Abstract
Crop production using greenhouse technology has become increasingly essential for intensifying agricultural output, particularly in regions with challenging climatic conditions. More so, greenhouses do not only support continuous crop supply but also provide a controlled environment crucial for studying plant-pathogen interaction. Likewise, pests and diseases are a constant threat to crop production, which requires innovative control methods. Providing a suitable and sustainable control method requires a detailed probe into the relationship between plants and biotic disturbance under controlled settings. Therefore this review explores the relationships between plants and pathogens, highlighting the impact of extreme greenhouse microclimates on plant pathology assays. Given the extreme weather conditions in the Arabian peninsula, the efficiency of greenhouses, especially during summer, is compromised without adequate cooling systems. This review discusses the current strategies employed to optimize greenhouse conditions in hot arid regions, aiming to enhance plant health by mitigating pathogen activity while minimizing energy, and water consumption. The review also provides an overview of how microclimatic parameters within greenhouses influence plant-pathogen dynamics, ensuring conditions that are conducive to managing both biotic and abiotic diseases. Additionally, the review aims to evaluate various cooling techniques available and most widely accepted in hot arid regions. Moreover, the performance indicators, principles, and effectiveness of each technique are discussed. Promising advances in the manipulations and combination of these techniques have proven to maintain an appropriate greenhouse microclimate with minimal resource use.
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Affiliation(s)
- Abdulmujib G. Yusuf
- Plant Protection Department, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Fahad A. Al-Yahya
- Plant Protection Department, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Amgad A. Saleh
- Plant Protection Department, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
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Õunapuu-Pikas E, Tullus A, Kupper P, Tamm I, Reinthal T, Sellin A. Foliage development and resource allocation determine the growth responses of silver birch (Betula pendula) to elevated environmental humidity. TREE PHYSIOLOGY 2025; 45:tpae161. [PMID: 39661000 DOI: 10.1093/treephys/tpae161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Revised: 10/31/2024] [Accepted: 12/07/2024] [Indexed: 12/12/2024]
Abstract
Scenarios for future climate predict an increase in precipitation amounts and frequency of rain events, resulting in higher air humidity and soil moisture at high latitudes, including in northern Europe. We analysed the effects of artificially elevated environmental humidity (air relative humidity and soil moisture) on leaf gas exchange, water relations, growth and phenology of silver birch (Betula pendula) trees growing at the free air humidity manipulation experimental site situated in the hemiboreal vegetation zone, in eastern Estonia, with no occurring water deficit to the trees. The environmental humidity manipulation did not significantly affect the water relations traits but did affect some leaf gas exchange parameters, growth and phenology of the trees. Elevated air humidity (H) did not influence photosynthetic capacity and stomatal conductance, while the trees exhibited higher stomatal sensitivity to leaf-to-air vapour pressure difference compared with the trees at ambient conditions (C) or at elevated soil moisture (I). H trees demonstrated reduced height growth and foliage biomass, increased allocation to stem radial growth and prolonged leaf retention in autumn compared with the C trees. Increased air humidity supports longer leaf retention and growth period, but this does not translate into increased growth parameters at the tree level. The changes in tree growth in response to increasing atmospheric humidity could plausibly be explained by (i) retardation of foliage development and (ii) changes in resource allocation, causing a shift in the ratio of photosynthetic to non-photosynthetic tissues in favour of the latter. Under high atmospheric evaporative demand, higher stomatal sensitivity in H trees induces faster stomatal closure, which may result in carbon starvation. A future rise in atmospheric humidity at high latitudes may lead to reduced tree growth and forest productivity, in contrast to the predicted future of forests.
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Affiliation(s)
- Eele Õunapuu-Pikas
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia
| | - Arvo Tullus
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia
| | - Priit Kupper
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia
| | - Ilona Tamm
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia
| | - Taavi Reinthal
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia
| | - Arne Sellin
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia
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Hussain S, Suda H, Nguyen CH, Yan D, Toyota M, Yoshioka K, Nambara E. Calcium signaling triggers early high humidity responses in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2024; 121:e2416270121. [PMID: 39661062 DOI: 10.1073/pnas.2416270121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Accepted: 11/07/2024] [Indexed: 12/12/2024] Open
Abstract
Plants need to adapt to fluctuating atmospheric humidity and respond to both high and low humidity. Despite our substantial understanding of plant responses to low humidity, molecular mechanisms underlying the high humidity (HH) response are much less well understood. In this study, we investigated early responses to HH in Arabidopsis. Expression of CYP707A3, encoding an abscisic acid (ABA) 8'-hydroxylase, is induced by HH within 10 min, which leads to a decrease in foliar ABA level. We identified that the combined action of CAMTA3 and CAMTA2 transcription factors regulate this response. This regulation requires a calmodulin (CaM)-binding domain of CAMTA3. Transcriptomes of HH-regulated genes are enriched in those related to calcium signaling, including cyclic nucleotide-gated ion channels (CNGCs). Moreover, HH induces CNGC2- and CNGC4-mediated increases in cytosolic Ca2+ concentrations in leaves within a few minutes. We also found that CNGC2, CNGC4, and CAMTAs participate in HH-induced hyponastic movement of petioles. Taken together, our results indicate that CNGC2/CNGC4-Ca2+-CaM-CAMTA3/CAMTA2 acts as a primary regulatory module to trigger downstream HH responses.
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Affiliation(s)
- Saad Hussain
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S3B2, Canada
| | - Hiraku Suda
- Department of Biochemistry and Molecular Biology, Saitama University, Saitama 338-8570, Japan
| | - Christine H Nguyen
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S3B2, Canada
| | - Dawei Yan
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S3B2, Canada
- Agriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, AB T1J4B1, Canada
| | - Masatsugu Toyota
- Department of Biochemistry and Molecular Biology, Saitama University, Saitama 338-8570, Japan
- Suntory Rising Stars Encouragement Program in Life Sciences, Suntory Foundation for Life Sciences, Kyoto 619-0284, Japan
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Keiko Yoshioka
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S3B2, Canada
- The Centre for Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON M5S3B2, Canada
| | - Eiji Nambara
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S3B2, Canada
- The Centre for Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON M5S3B2, Canada
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Ullah S, Ikram M, Xiao J, Khan A, Din I, Huang J. Influence of Foliar Application of Nanoparticles on Low Temperature Resistance of Rice Seedlings. PLANTS (BASEL, SWITZERLAND) 2024; 13:2949. [PMID: 39519868 PMCID: PMC11548232 DOI: 10.3390/plants13212949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 10/13/2024] [Accepted: 10/14/2024] [Indexed: 11/16/2024]
Abstract
Chilling stress, a common abiotic factor, adversely affects the growth and biomass of rice seedlings during the early stages, ultimately reducing the yield. Effective strategies to mitigate these negative impacts are essential for improving rice productivity. The application of nanotechnology in agriculture, particularly nanoparticles (NPs), has shown a promising effect in alleviating chilling stress in plants. This study evaluates the effects of various nanoparticles, ZnO (0, 50, 100, and 200 mg/L), Fe2O3 (0, 50, 75, and 100 mg/L), TiO2 (0, 50, 75, and 100 mg/L), and CeO2 (0, 50, 75, and 100 mg/L) on the chilling resistance with one control (a water spray) under a normal temperature. Four rice cultivars: LLY-7108 and XZX-6 (Low-temperature-tolerant), and LLY-32 and ZJZ-17 (Low-temperature-susceptible) were tested in this experiment. Rice seedlings were subjected to low temperature conditions (12 h light 14 °C/12 h dark, at 10 °C) for five days, followed by seven days of recovery. The results of this study demonstrate that NPs significantly enhanced seedling height fresh/dry weight and root length compared to untreated controls under chilling stress. NP treatment also reduced the reactive oxygen species (ROS), malondialdehyde (MDA), and proline content, while enhancing superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activities, thereby mitigating oxidative damage. The four rice varieties exhibited clear signs of rapid growth recovery and positive physiological changes due to NPs' application. Among the tested cultivars, LLY-7108 showed the most substantial recovery and physiological responses, while ZJZ-17 exhibited the least. The findings of this study indicate that the foliar application of ZnO (100 mg/L), Fe2O3 (50 mg/L), TiO2 (50 mg/L), and CeO2 (75 mg/L) NPs effectively mitigates chilling stress in rice seedlings, likely by enhancing the antioxidant enzymatic activity while reducing the oxidative damage. This study highlights the potential of NPs as effective agents in reducing the adverse effects of chilling stress on rice.
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Affiliation(s)
- Shafi Ullah
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (S.U.); (J.X.); (A.K.)
| | - Muhammad Ikram
- MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;
| | - Jian Xiao
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (S.U.); (J.X.); (A.K.)
| | - Atika Khan
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (S.U.); (J.X.); (A.K.)
| | - Ismail Din
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China;
| | - Jianliang Huang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (S.U.); (J.X.); (A.K.)
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Krylova EA, Burlyaeva MO, Tvorogova VE, Khlestkina EK. Contrast Relative Humidity Response of Diverse Cowpea ( Vigna unguiculata (L.) Walp.) Genotypes: Deep Study Using RNAseq Approach. Int J Mol Sci 2024; 25:11056. [PMID: 39456837 PMCID: PMC11507454 DOI: 10.3390/ijms252011056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 10/07/2024] [Accepted: 10/13/2024] [Indexed: 10/28/2024] Open
Abstract
Cowpea (Vigna unguiculata (L.) Walp.) is appreciated for its suitability for cultivation and obtaining good yields in relatively extreme farming conditions. It is resistant to high temperatures and drought. Moreover, food products prepared from Vigna are rich in many nutrients such as proteins, amino acids, carbohydrates, minerals, fiber, vitamins, and other bioactive compounds. However, in East and Southeast Asia, where the products of this crop are in demand, the climate is characterized by excessive humidity. Under these conditions, the vast majority of cowpea varieties tend to have indeterminate growth (elongated shoot length) and are unsuitable for mechanized harvesting. The molecular mechanisms for tolerance to high relative humidity remain the least studied in comparison with those for other abiotic stress factors (drought, heat, cold, flooding, etc.). The purpose of the work was to reveal and investigate differentially expressed genes in cowpea accessions having contrasting growth habits (determinate and indeterminate) under humid and drought conditions. We performed RNA-seq analysis using selected cowpea accessions from the VIR collection. Among the genotypes used, some have significant changes in their plant architecture in response to high relative humidity, while others were tolerant to these conditions. In total, we detected 1697 upregulated and 1933 downregulated genes. The results showed that phytohormone-related genes are involved in cowpea response to high relative humidity. DEGs associated with jasmonic acid signaling are proposed to be key contributors in the maintenance of compact architecture under humid conditions.
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Affiliation(s)
- Ekaterina A. Krylova
- N.I. Vavilov All-Russian Institute of Plant Genetic Resources, 190000 Saint Petersburg, Russia; (M.O.B.); (V.E.T.); (E.K.K.)
| | - Marina O. Burlyaeva
- N.I. Vavilov All-Russian Institute of Plant Genetic Resources, 190000 Saint Petersburg, Russia; (M.O.B.); (V.E.T.); (E.K.K.)
| | - Varvara E. Tvorogova
- N.I. Vavilov All-Russian Institute of Plant Genetic Resources, 190000 Saint Petersburg, Russia; (M.O.B.); (V.E.T.); (E.K.K.)
- Department of Genetics and Biotechnology, Saint Petersburg State University, 7/9 Universitetskaya Emb, 199034 Saint Petersburg, Russia
- Plant Biology and Biotechnology Department, Sirius University of Science and Technology, 1 Olympic Avenue, 354340 Sochi, Russia
| | - Elena K. Khlestkina
- N.I. Vavilov All-Russian Institute of Plant Genetic Resources, 190000 Saint Petersburg, Russia; (M.O.B.); (V.E.T.); (E.K.K.)
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Dubey S, Harbourne N, Harty M, Hurley D, Elliott-Kingston C. Microgreens Production: Exploiting Environmental and Cultural Factors for Enhanced Agronomical Benefits. PLANTS (BASEL, SWITZERLAND) 2024; 13:2631. [PMID: 39339608 PMCID: PMC11435253 DOI: 10.3390/plants13182631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Revised: 09/10/2024] [Accepted: 09/18/2024] [Indexed: 09/30/2024]
Abstract
An exponential growth in global population is expected to reach nine billion by 2050, demanding a 70% increase in agriculture productivity, thus illustrating the impact of global crop production on the environment and the importance of achieving greater agricultural yields. Globally, the variety of high-quality microgreens is increasing through indoor farming at both small and large scales. The major concept of Controlled Environment Agriculture (CEA) seeks to provide an alternative to traditional agricultural cultivation. Microgreens have become popular in the twenty-first century as a food in the salad category that can fulfil some nutrient requirements. Microgreens are young seedlings that offer a wide spectrum of colours, flavours, and textures, and are characterised as a "functional food" due to their nutraceutical properties. Extensive research has shown that the nutrient profile of microgreens can be desirably tailored by preharvest cultivation and postharvest practices. This study provides new insight into two major categories, (i) environmental and (ii) cultural, responsible for microgreens' growth and aims to explore the various agronomical factors involved in microgreens production. In addition, the review summarises recent studies that show these factors have a significant influence on microgreens development and nutritional composition.
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Affiliation(s)
- Shiva Dubey
- School of Agriculture and Food Science, University College Dublin, Belfield, D04 V1W8 Dublin, Ireland; (N.H.); (M.H.); (D.H.); (C.E.-K.)
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Jiang Z, Yao L, Zhu X, Hao G, Ding Y, Zhao H, Wang S, Wen CK, Xu X, Xin XF. Ethylene signaling modulates air humidity responses in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:653-668. [PMID: 37997486 DOI: 10.1111/tpj.16556] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 11/02/2023] [Accepted: 11/08/2023] [Indexed: 11/25/2023]
Abstract
Air humidity significantly impacts plant physiology. However, the upstream elements that mediate humidity sensing and adaptive responses in plants remain largely unexplored. In this study, we define high humidity-induced cellular features of Arabidopsis plants and take a quantitative phosphoproteomics approach to obtain a high humidity-responsive landscape of membrane proteins, which we reason are likely the early checkpoints of humidity signaling. We found that a brief high humidity exposure (i.e., 0.5 h) is sufficient to trigger extensive changes in membrane protein abundance and phosphorylation. Enrichment analysis of differentially regulated proteins reveals high humidity-sensitive processes such as 'transmembrane transport', 'response to abscisic acid', and 'stomatal movement'. We further performed a targeted screen of mutants, in which high humidity-responsive pathways/proteins are disabled, to uncover genes mediating high humidity sensitivity. Interestingly, ethylene pathway mutants (i.e., ein2 and ein3eil1) display a range of altered responses, including hyponasty, reactive oxygen species level, and responsive gene expression, to high humidity. Furthermore, we observed a rapid induction of ethylene biosynthesis genes and ethylene evolution after high humidity treatment. Our study sheds light on the potential early signaling events in humidity perception, a fundamental but understudied question in plant biology, and reveals ethylene as a key modulator of high humidity responses in plants.
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Affiliation(s)
- Zeyu Jiang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Lingya Yao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiangmei Zhu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Guodong Hao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yanxia Ding
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hangwei Zhao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shanshan Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chi-Kuang Wen
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiaoyan Xu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiu-Fang Xin
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
- Chinese Academy of Sciences (CAS) and CAS John Innes Centre of Excellence for Plant and Microbial Sciences, Shanghai, China
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10
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Balcerowicz M. Left out in the rain: ethylene emerges as a novel regulator of responses to air humidity. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:651-652. [PMID: 38294828 DOI: 10.1111/tpj.16632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
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11
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Rumyantseva NI, Valieva AI, Kostyukova YA, Ageeva MV. The Effect of Leaf Plasticity on the Isolation of Apoplastic Fluid from Leaves of Tartary Buckwheat Plants Grown In Vivo and In Vitro. PLANTS (BASEL, SWITZERLAND) 2023; 12:4048. [PMID: 38068682 PMCID: PMC10707844 DOI: 10.3390/plants12234048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/20/2023] [Accepted: 11/24/2023] [Indexed: 10/19/2024]
Abstract
Vacuum infiltration-centrifugation (VIC) is the most reproducible technique for the isolation of apoplast washing fluid (AWF) from leaves, but its effectiveness depends on the infiltration-centrifugation conditions and the anatomical and physiological peculiarities of leaves. This study aimed to elaborate an optimal procedure for AWF isolation from the leaves of Tartary buckwheat grown in in vivo and in vitro conditions and reveal the leaf anatomical and physiological traits that could contribute to the effectiveness of AWF isolation. Here, it was demonstrated that leaves of buckwheat plants grown in vitro could be easier infiltrated, were less sensitive to higher forces of centrifugation (900× g and 1500× g), and produced more AWF yield and apoplastic protein content than in vivo leaves at the same forces of centrifugation (600× g and 900× g). The extensive study of the morphological, anatomical, and ultrastructural characteristics of buckwheat leaves grown in different conditions revealed that in vitro leaves exhibited significant plasticity in a number of interconnected morphological, anatomical, and physiological features, generally driven by high RH and low lighting; some of them, such as the reduced thickness and increased permeability of the cuticle of the epidermal cells, large intercellular spaces, increase in the size of stomata and in the area of stomatal pores, higher stomata index, drop in density, and area of calcium oxalate druses, are beneficial to the effectiveness of VIC. The size of stomata pores, which were almost twice as large in in vitro leaves as those in in vivo ones, was the main factor contributing to the isolation of AWF free of chlorophyll contamination. The opening of stomata pores by artificially created humid conditions reduced damage to the in vivo leaves and improved the VIC of them. For Fagopyrum species, this is the first study to develop a VIC technique for AWF isolation from leaves.
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Affiliation(s)
- Natalya I. Rumyantseva
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, Kazan 420111, Russia; (A.I.V.); (Y.A.K.); (M.V.A.)
- Department of Botany and Plant Physiology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kremlyovskaya 18, Kazan 420008, Russia
| | - Alfia I. Valieva
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, Kazan 420111, Russia; (A.I.V.); (Y.A.K.); (M.V.A.)
| | - Yulia A. Kostyukova
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, Kazan 420111, Russia; (A.I.V.); (Y.A.K.); (M.V.A.)
| | - Marina V. Ageeva
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, Kazan 420111, Russia; (A.I.V.); (Y.A.K.); (M.V.A.)
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12
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Zheng L, Chen Y, Ding L, Zhou Y, Xue S, Li B, Wei J, Wang H. The transcription factor MYB156 controls the polar stiffening of guard cell walls in poplar. THE PLANT CELL 2023; 35:3757-3781. [PMID: 37437118 PMCID: PMC10533337 DOI: 10.1093/plcell/koad198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 06/09/2023] [Accepted: 06/14/2023] [Indexed: 07/14/2023]
Abstract
The mechanical properties of guard cells have major effects on stomatal functioning. Reinforced stiffness in the stomatal polar regions was recently proposed to play an important role in stomatal function, but the underlying molecular mechanisms remain elusive. Here, we used genetic and biochemical approaches in poplar (Populus spp.) to show that the transcription factor MYB156 controls pectic homogalacturonan-based polar stiffening through the downregulation of the gene encoding pectin methylesterase 6 (PME6). Loss of MYB156 increased the polar stiffness of stomata, thereby enhancing stomatal dynamics and response speed to various stimuli. In contrast, overexpression of MYB156 resulted in decreased polar stiffness and impaired stomatal dynamics, accompanied by smaller leaves. Polar stiffening functions in guard cell dynamics in response to changing environmental conditions by maintaining normal stomatal morphology during stomatal movement. Our study revealed the structure-function relationship of the cell wall of guard cells in stomatal dynamics, providing an important means for improving the stomatal performance and drought tolerance of plants.
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Affiliation(s)
- Lin Zheng
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Yajuan Chen
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Liping Ding
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Ying Zhou
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Shanshan Xue
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Biying Li
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Jianhua Wei
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Hongzhi Wang
- Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
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Li X, Zhang P, Liu J, Wang H, Liu J, Li H, Xie H, Wang Q, Li L, Zhang S, Huang L, Liu C, Qin P. Integrated Metabolomic and Transcriptomic Analysis of the Quinoa Seedling Response to High Relative Humidity Stress. Biomolecules 2023; 13:1352. [PMID: 37759752 PMCID: PMC10527060 DOI: 10.3390/biom13091352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 08/30/2023] [Accepted: 09/03/2023] [Indexed: 09/29/2023] Open
Abstract
Quinoa is of great interest because it is cold- and drought-resistant; however, little research has been performed on quinoa under high relative humidity (RH) stress. In this study, quinoa seedlings of a highly HR-resistant variety ("Dianli-439") and a sensitive variety ("Dianli-969") were subjected to morphological and physiological measurements and metabolome and transcriptome analyses to investigate their response to high RH stress. In total, 1060 metabolites were detected, and lipids and flavonoids were the most abundant, with 173 and 167 metabolites, respectively. In total, 13,095 differentially expressed genes were identified, and the results showed that abscisic acid, auxin, and jasmonic-acid-related genes involved in plant hormone signaling may be involved in the response of quinoa seedlings to high RH stress. The analysis of the transcription factors revealed that the AP2/ERF family may also play an important role in the response to high RH stress. We identified the possible regulatory mechanisms of the hormone signaling pathways under high RH stress. Our findings can provide a basis for the selection and identification of highly resistant quinoa varieties and the screening of the metabolite-synthesis- and gene-regulation-related mechanisms in quinoa in response to RH stress.
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Affiliation(s)
- Xinyi Li
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Ping Zhang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Jia Liu
- Yuxi Academy of Agricultural Science, Yuxi 653100, China;
| | - Hongxin Wang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Junna Liu
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Hanxue Li
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Heng Xie
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Qianchao Wang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Li Li
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Shan Zhang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Liubin Huang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
| | - Chenghong Liu
- Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai 201106, China
| | - Peng Qin
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China (P.Z.); (H.W.); (J.L.); (H.L.); (H.X.); (Q.W.); (L.L.)
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14
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Kupper P, Tullus A, Rohula-Okunev G. Night-time water relations and gas exchange in cut shoots of five boreal dwarf shrub species: impact of soil water availability. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2023; 29:1193-1203. [PMID: 37829697 PMCID: PMC10564692 DOI: 10.1007/s12298-023-01350-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 08/03/2023] [Accepted: 08/21/2023] [Indexed: 10/14/2023]
Abstract
Recent findings suggest that drought may affect plants' daytime and night-time stomatal regulation differently. However, knowledge of night-time stomatal behaviour in dwarf shrubs growing in boreal ecosystems is lacking. We sampled cut shoots from dwarf shrub species to elucidate their capacity to transpire at night and the effect of drought on stomatal regulation. The shoots' water relations and gas exchange were measured under controlled conditions in a growth chamber. The studied species demonstrated considerable differences in their diurnal water use. The night-time water use percentage of daytime water use (NWU) reached up to 90% in Andromeda polifolia and Vaccinium uliginosum. In Rhododendron tomentosum, Vaccinium myrtillus and Chamaedaphne calyculata, the NWU was 62, 27 and 26%, respectively. The shoots of C. calyculata showed a significant increase (P < 0.001) in the transpiration rate (E) during the night. However, in R. tomentosum, a decrease (P < 0.05) in nightly E was observed. The shoot conductance (g) at the end of the night was lower than daytime g in all studied species, but the difference was not significant for V. uliginosum. Across the species, NWU was negatively related (P < 0.001) to the soil volumetric water content (SWC) in the plant habitat. However, daytime E and g were positively related (P < 0.05) to the habitat SWC. Only in V. myrtillus was night-time E higher (P < 0.05) in dry conditions than in wet conditions. Our results demonstrate high variability in diurnal water relations in dwarf shrubs, which can keep stomata open in the dark even when drought limits daytime g and E.
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Affiliation(s)
- Priit Kupper
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409 Tartu, Estonia
| | - Arvo Tullus
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409 Tartu, Estonia
| | - Gristin Rohula-Okunev
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409 Tartu, Estonia
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15
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Kharel B, Rusalepp L, Bhattarai B, Kaasik A, Kupper P, Lutter R, Mänd P, Rohula-Okunev G, Rosenvald K, Tullus A. Effects of air humidity and soil moisture on secondary metabolites in the leaves and roots of Betula pendula of different competitive status. Oecologia 2023:10.1007/s00442-023-05388-9. [PMID: 37246972 DOI: 10.1007/s00442-023-05388-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 05/19/2023] [Indexed: 05/30/2023]
Abstract
Plant secondary metabolites (PSMs) defend plants against abiotic stresses, including those caused by climate change and against biotic stresses, such as herbivory and competition. There is a trade-off between allocating available carbon to growth and defence in stressful environments. However, our knowledge about trade-off is limited, especially when abiotic and biotic stresses co-occur. We aimed to understand the combined effect of increasing precipitation and humidity, the tree's competitive status, and canopy position on leaf secondary metabolites (LSMs) and fine root secondary metabolites (RSMs) in Betula pendula. We sampled 8-year-old B. pendula trees growing in the free air humidity manipulation (FAHM) experimental site, where treatments included elevated relative air humidity and elevated soil moisture. A high-performance liquid chromatography-quadrupole-time of flight mass spectrometer (HPLC-qTOF-MS) was used to analyse secondary metabolites. Our results showed accumulation of LSM depends on the canopy position and competitive status. Flavonoids (FLA), dihydroxybenzoic acids (HBA), jasmonates (JA) and terpene glucosides (TG) were higher in the upper canopy, and FLA, monoaryl compounds (MAR) and sesquiterpenoids (ST) were higher in dominant trees. The FAHM treatments had a more distinct effect on RSM than on LSM. The RSMs were lower in elevated air humidity and soil moisture conditions than in control conditions. The RSM content depended on the competitive status and was higher in suppressed trees. Our study suggests that young B. pendula will allocate similar amounts of carbon to constitutive chemical leaf defence, but a lower amount to root defence (per fine root biomass) under higher humidity.
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Affiliation(s)
- Bikash Kharel
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia.
| | - Linda Rusalepp
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, 51006, Tartu, Estonia
| | - Biplabi Bhattarai
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
| | - Ants Kaasik
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
| | - Priit Kupper
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
| | - Reimo Lutter
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Kreutzwaldi 5, 51006, Tartu, Estonia
| | - Pille Mänd
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
| | - Gristin Rohula-Okunev
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
| | - Katrin Rosenvald
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
| | - Arvo Tullus
- Institute of Ecology and Earth Sciences, University of Tartu, Liivi 2, 50409, Tartu, Estonia
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16
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Escobar-Bravo R, Lin PA, Waterman JM, Erb M. Dynamic environmental interactions shaped by vegetative plant volatiles. Nat Prod Rep 2023; 40:840-865. [PMID: 36727645 PMCID: PMC10132087 DOI: 10.1039/d2np00061j] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Indexed: 02/03/2023]
Abstract
Covering: up to November 2022Plants shape terrestrial ecosystems through physical and chemical interactions. Plant-derived volatile organic compounds in particular influence the behavior and performance of other organisms. In this review, we discuss how vegetative plant volatiles derived from leaves, stems and roots are produced and released into the environment, how their production and release is modified by abiotic and biotic factors, and how they influence other organisms. Vegetative plant volatiles are derived from different biosynthesis and degradation pathways and are released via distinct routes. Both biosynthesis and release are regulated by other organisms as well as abiotic factors. In turn, vegetative plant volatiles modify the physiology and the behavior of a wide range of organisms, from microbes to mammals. Several concepts and frameworks can help to explain and predict the evolution and ecology of vegetative plant volatile emission patterns of specific pathways: multifunctionality of specialized metabolites, chemical communication displays and the information arms race, and volatile physiochemistry. We discuss how these frameworks can be leveraged to understand the evolution and expression patterns of vegetative plant volatiles. The multifaceted roles of vegetative plant volatiles provide fertile grounds to understand ecosystem dynamics and harness their power for sustainable agriculture.
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Affiliation(s)
| | - Po-An Lin
- Department of Entomology, National Taiwan University, Taipei, Taiwan
| | - Jamie M Waterman
- Institute of Plant Sciences, University of Bern, Bern, Switzerland.
| | - Matthias Erb
- Institute of Plant Sciences, University of Bern, Bern, Switzerland.
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Wang H, Zhong L, Fu X, Huang S, Zhao D, He H, Chen X. Physiological analysis reveals the mechanism of accelerated growth recovery for rice seedlings by nitrogen application after low temperature stress. FRONTIERS IN PLANT SCIENCE 2023; 14:1133592. [PMID: 36875613 PMCID: PMC9978396 DOI: 10.3389/fpls.2023.1133592] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
Low temperature and overcast rain are harmful to directly seeding early rice, it can hinder rice growth and lower rice biomass during the seedling stage, which in turn lowers rice yield. Farmers usually use N to help rice recuperate after stress and minimize losses. However, the effect of N application on the growth recovery for rice seedlings after such low temperature stress and its associated physiological changes remain unclearly. Two temperature settings and four post-stress N application levels were used in a bucket experiment to compare B116 (strong growth recovery after stress) with B144 (weak growth recovery). The results showed that the stress (average daily temperature at 12°C for 4 days) inhibited the growth of rice seedlings. Compared to the zero N group, the N application group's seedling height, fresh weight and dry weight significantly increased after 12 days. In particular, the increases in all three growth indicators were relatively higher than that of N application at normal temperature, indicating the importance of N application to rice seedlings after low temperature stress. The antioxidant enzyme activity of rice seedlings increased significantly after N application, which reduced the damaging effect of ROS (reactive oxygen species) to rice seedlings. At the same time, the soluble protein content of seedlings showed a slow decrease, while the H2O2 and MDA (malondialdehyde) content decreased significantly. Nitrogen could also promote nitrogen uptake and utilization by increasing the expression of genes related to NH 4 + and NO 3 - uptake and transport, as well as improving the activity of NR (nitrate reductase) and GS (glutamine synthetase) in rice. N could affect GA3 (gibberellin A3) and ABA (abscisic acid) levels by regulating the anabolism of GA3 and ABA. The N application group maintained high ABA levels as well as low GA3 levels from day 0 to day 6, and high GA3 levels as well as low ABA levels from day 6 to day 12. The two rice varieties showed obvious characteristics of accelerated growth recovery and positive physiological changes by nitrogen application after stress, while B116 generally showed more obvious growth recovery and stronger growth-related physiological reaction than that of B144. The N application of 40 kg hm-2 was more conducive to the rapid recovery of rice growth after stress. The above results indicated that appropriate N application promoted rice seedling growth recovery after low temperature stress mainly by increasing the activities of antioxidant enzymes and nitrogen metabolizing enzymes as well as regulating the levels of GA3 and ABA. The results of this study will provide a reference for the regulation of N on the recovery of rice seedling growth after low temperature and weak light stress.
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Affiliation(s)
- Hui Wang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
| | - Lei Zhong
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
| | - Xiaoquan Fu
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
| | - Shiying Huang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
| | - Desheng Zhao
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
| | - Haohua He
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
| | - Xiaorong Chen
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang, China
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Chandel NS, Rajwade YA, Dubey K, Chandel AK, Subeesh A, Tiwari MK. Water Stress Identification of Winter Wheat Crop with State-of-the-Art AI Techniques and High-Resolution Thermal-RGB Imagery. PLANTS (BASEL, SWITZERLAND) 2022; 11:3344. [PMID: 36501383 PMCID: PMC9741210 DOI: 10.3390/plants11233344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 11/25/2022] [Accepted: 11/27/2022] [Indexed: 06/17/2023]
Abstract
Timely crop water stress detection can help precision irrigation management and minimize yield loss. A two-year study was conducted on non-invasive winter wheat water stress monitoring using state-of-the-art computer vision and thermal-RGB imagery inputs. Field treatment plots were irrigated using two irrigation systems (flood and sprinkler) at four rates (100, 75, 50, and 25% of crop evapotranspiration [ETc]). A total of 3200 images under different treatments were captured at critical growth stages, that is, 20, 35, 70, 95, and 108 days after sowing using a custom-developed thermal-RGB imaging system. Crop and soil response measurements of canopy temperature (Tc), relative water content (RWC), soil moisture content (SMC), and relative humidity (RH) were significantly affected by the irrigation treatments showing the lowest Tc (22.5 ± 2 °C), and highest RWC (90%) and SMC (25.7 ± 2.2%) for 100% ETc, and highest Tc (28 ± 3 °C), and lowest RWC (74%) and SMC (20.5 ± 3.1%) for 25% ETc. The RGB and thermal imagery were then used as inputs to feature-extraction-based deep learning models (AlexNet, GoogLeNet, Inception V3, MobileNet V2, ResNet50) while, RWC, SMC, Tc, and RH were the inputs to function-approximation models (Artificial Neural Network (ANN), Kernel Nearest Neighbor (KNN), Logistic Regression (LR), Support Vector Machine (SVM) and Long Short-Term Memory (DL-LSTM)) to classify stressed/non-stressed crops. Among the feature extraction-based models, ResNet50 outperformed other models showing a discriminant accuracy of 96.9% with RGB and 98.4% with thermal imagery inputs. Overall, classification accuracy was higher for thermal imagery compared to RGB imagery inputs. The DL-LSTM had the highest discriminant accuracy of 96.7% and less error among the function approximation-based models for classifying stress/non-stress. The study suggests that computer vision coupled with thermal-RGB imagery can be instrumental in high-throughput mitigation and management of crop water stress.
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Affiliation(s)
- Narendra S. Chandel
- Agricultural Mechanization Division, ICAR—Central Institute of Agricultural Engineering, Bhopal 462038, MP, India
| | - Yogesh A. Rajwade
- Irrigation and Drainage Engineering Division, ICAR—Central Institute of Agricultural Engineering, Bhopal 462038, MP, India
| | - Kumkum Dubey
- Agricultural Mechanization Division, ICAR—Central Institute of Agricultural Engineering, Bhopal 462038, MP, India
| | - Abhilash K. Chandel
- Department of Biological Systems Engineering, Virginia Tech Tidewater AREC, Suffolk, VA 23437, USA
- Center for Advanced Innovation in Agriculture (CAIA), Virginia Tech, Blacksburg, VA 24061, USA
| | - A. Subeesh
- Agricultural Mechanization Division, ICAR—Central Institute of Agricultural Engineering, Bhopal 462038, MP, India
| | - Mukesh K. Tiwari
- College of Agricultural Engineering and Technology, Anand Agricultural University, Godhra 389001, GJ, India
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19
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Kang Y, Wu Q, Qin J, Zhong M, Yang X, Chai X. High relative humidity improves leaf burn resistance in flowering Chinese cabbage seedlings cultured in a closed plant factory. PeerJ 2022; 10:e14325. [PMID: 36389408 PMCID: PMC9651049 DOI: 10.7717/peerj.14325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 10/10/2022] [Indexed: 11/11/2022] Open
Abstract
Plant factories that ensure the annual production of vegetable crops have sparked much attention. In the present study, thirty types of common vegetable crops from 25 species and eight families, were grown in a multi-layer hydroponic system in a closed-type plant factory to evaluate the adaptive performance. A total of 20 vegetable crops, belonging to 14 species and 4 families, unexpectedly exhibited different degrees of leaf margin necrosis in lower leaves firstly, then the upper leaves gradually. We defined this new physiological disorder as "leaf burn". It occurred more commonly and severely in cruciferous leafy vegetables. Two different light intensities (150 and 105 µmol m-2 s-1 photosynthetic photon flux density (PPFD)), three photoperiod conditions (12, 10 and 8 h d-1) and two canopy relative air humidity (RH) (70% and 90% RH) were set to evaluate the suppression effects on leaf burn occurrence in two commercial flowering Chinese cabbage cultivars ('Sijiu' and 'Chixin'), the special cruciferous vegetable in South China. We discovered that changing light conditions did not fully suppress leaf burn occurrence in the cultivar 'Sijiu', though lower light intensity and shorter photoperiod partly did. Interestingly, the occurrence of leaf burn was completely restrained by an increased canopy RH from 70% to 90%. Specifically, the low RH-treated seedlings occurred varying degree of leaf burn symptoms, along with rapidly decreased water potential in leaves, while the high RH treatment significantly lessened the drop in leaf water potential, together with increased photosynthetic pigment contents, net photosynthetic rate, stomatal conductance and transpiration rate, decreased leaf stomatal aperture and density, and thus reduced the incidence of leaf burn in 'Sijiu' and 'Chixin', from 28.89% and 18.52% to zero, respectively. Taken together, high canopy RH may favor maintaining leaf water potential and improving photosynthesis performance, jointly regulating leaf burn incidence and plant growth.
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Affiliation(s)
- Yunyan Kang
- College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
| | - Qiaobo Wu
- College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
| | - Jinming Qin
- College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
| | - Min Zhong
- College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
| | - Xian Yang
- College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
| | - Xirong Chai
- College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
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20
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Wang H, Zhong L, Fu X, Huang S, Fu H, Shi X, Hu L, Cai Y, He H, Chen X. Physiological and Transcriptomic Analyses Reveal the Mechanisms of Compensatory Growth Ability for Early Rice after Low Temperature and Weak Light Stress. PLANTS 2022; 11:plants11192523. [PMID: 36235390 PMCID: PMC9570567 DOI: 10.3390/plants11192523] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 09/19/2022] [Accepted: 09/21/2022] [Indexed: 11/16/2022]
Abstract
“Late spring coldness” (T) is a frequent meteorological disaster in the spring in southern China, often causing severe yield losses of direct-seeded early rice. In this study, we investigated the mechanisms underlying the differences in the compensatory growth ability of different rice genotypes by focusing on agronomic traits, physiological indicators, and transcriptome. The results showed that there were significant differences in the compensatory growth recovery ability of different genotypes after a combination of four days of low temperature and weak light stress. Only the strong compensatory growth genotype B116 was able to grow rapidly and reduce soluble protein and H2O2 concentrations rapidly after stress. By analyzing enzyme activity as well as endogenous hormone concentration, we found that the high superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activities and high levels of abscisic acid (ABA) could reduce the damage of B116 during stress. Meanwhile, higher glutamine synthetase (GS) and nitrate reductase (NR) activity and higher levels of gibberellin A3(GA3), indoleacetic acid (IAA), and zeatin nucleoside (ZR) could enable B116 to grow rapidly after stress. The identified differentially expressed genes (DEGs) indicated that there were large differences in POD-related genes and gibberellin metabolism between B116 and B144 after stress; RT-PCR quantification also showed a trend consistent with RNA-seq, which may be an important reason for the differences in compensatory growth ability.
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Affiliation(s)
- Hui Wang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Lei Zhong
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Xiaoquan Fu
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Shiying Huang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Haihui Fu
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Xiang Shi
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Lifang Hu
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Yicong Cai
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Haohua He
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
| | - Xiaorong Chen
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang 330045, China
- Jiangxi Super Rice Engineering Technology Center, Jiangxi Agricultural University, Nanchang 330045, China
- College of Agriculture, Jiangxi Agricultural University, Nanchang 330045, China
- Correspondence:
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21
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Leaf and Branch Hydraulic Plasticity of Two Light-Demanding Broadleaved Tree Species Differing in Water-Use Strategy. FORESTS 2022. [DOI: 10.3390/f13040594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Global climate change creates new environmental scenarios and selective pressures; thus, a better understanding of the plasticity of plant functional traits is needed to predict how plant species will respond to shifts in climate. Among the important functional traits for plants are their hydraulic properties which ultimately determine their photosynthetic capacity, growth rate, and survival in a changing environment. In this study, the light sensitivity of leaf (KL) and branch hydraulic conductance (KB) to fast changes in irradiance, and hydraulic plasticity (PIh) was studied in two broadleaved tree species differing in water-use strategy—silver birch (Betula pendula) and hybrid aspen (Populus × wettsteinii). The KL increased by a factor of 3.5 and 1.5 from minimal values recorded in darkness to maximal values in high light conditions for birch and aspen, respectively, indicating a significantly higher PIh for birch (0.72) than for aspen leaves (0.35). KB increased 1.5-fold from dark to light conditions for both species. The high light sensitivity of KL and KB provides a regulatory mechanism to maintain a balance between transpirational demand and hydraulic supply. The plasticity of these traits increases the ability of plants to cope with a rapidly changing environment and to adapt to global climate change.
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22
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Abstract
Several investigations have shown that enhanced mixing brought about by wind turbines alters near-surface meteorological conditions within and downstream of a wind farm. When scalar meteorological parameters have been considered, the focus has most often centered on temperature changes. A subset of these works has also considered humidity to various extents. These limited investigations are complemented by just a few studies dedicated to analyzing humidity changes. With onshore wind turbines often sited in agricultural areas, any changes to the microclimate surrounding a turbine can impact plant health and the length of the growing season; any changes to the environment around an offshore wind farm can change cloud and fog formation and dissipation, among other impacts. This article provides a review of observational field campaigns and numerical investigations examining changes to humidity within wind turbine array boundary layers. Across the range of empirical observations and numerical simulations, changes to humidity were observed in stably stratified conditions. In addition to the role of atmospheric stability, this review reveals that the nature of the change depends on the upstream moisture profile; robustness of the mixing; turbine array layout; distance from the turbine, in all three directions; and vertical temperature profile.
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23
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Sell M, Ostonen I, Rohula-Okunev G, Rusalepp L, Rezapour A, Kupper P. Responses of fine root exudation, respiration and morphology in three early successional tree species to increased air humidity and different soil nitrogen sources. TREE PHYSIOLOGY 2022; 42:557-569. [PMID: 34505158 DOI: 10.1093/treephys/tpab118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 08/16/2021] [Accepted: 09/01/2021] [Indexed: 06/13/2023]
Abstract
Global climate change scenarios predict an increase in air temperature, precipitation and air humidity for northern latitudes. Elevated air humidity may significantly reduce the water flux through forest canopies and affect interactions between water and nutrient uptake. However, we have limited understanding of how altered transpiration would affect root respiration and carbon (C) exudation as fine root morphology acclimates to different water flux. We investigated the effects of elevated air relative humidity (eRH) and different inorganic nitrogen sources (NO3- and NH4+) on above and belowground traits in hybrid aspen (Populus × wettsteinii Hämet-Ahti), silver birch (Betula pendula Roth.) and Scots pine (Pinus sylvestris L.) grown under controlled climate chamber conditions. The eRH significantly decreased the transpiration flux in all species, decreased root mass-specific exudation in pine, and increased root respiration in aspen. eRH also affected fine root morphology, with specific root area increasing for birch but decreasing in pine. The species comparison revealed that pine had the highest C exudation, whereas birch had the highest root respiration rate. Both humidity and nitrogen treatments affected the share of absorptive and pioneer roots within fine roots; however, the response was species-specific. The proportion of absorptive roots was highest in birch and aspen, the share of pioneer roots was greatest in aspen and the share of transport roots was greatest in pine. Fine roots with lower root tissue density were associated with pioneer root tips and had a higher C exudation rate. Our findings underline the importance of considering species-specific differences in relation to air humidity and soil nitrogen availability that interactively affect the C input-output balance. We highlight the role of changes in the fine root functional distribution as an important acclimation mechanism of trees in response to environmental change.
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Affiliation(s)
- Marili Sell
- University of Tartu, Institute of Ecology and Earth Sciences, Vanemuise 46, 51003, Tartu, Estonia
| | - Ivika Ostonen
- University of Tartu, Institute of Ecology and Earth Sciences, Vanemuise 46, 51003, Tartu, Estonia
| | - Gristin Rohula-Okunev
- University of Tartu, Institute of Ecology and Earth Sciences, Vanemuise 46, 51003, Tartu, Estonia
| | - Linda Rusalepp
- University of Tartu, Institute of Ecology and Earth Sciences, Vanemuise 46, 51003, Tartu, Estonia
| | - Azadeh Rezapour
- University of Tartu, Institute of Ecology and Earth Sciences, Vanemuise 46, 51003, Tartu, Estonia
| | - Priit Kupper
- University of Tartu, Institute of Ecology and Earth Sciences, Vanemuise 46, 51003, Tartu, Estonia
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24
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Phylloplane Biodiversity and Activity in the City at Different Distances from the Traffic Pollution Source. PLANTS 2022; 11:plants11030402. [PMID: 35161383 PMCID: PMC8839900 DOI: 10.3390/plants11030402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Revised: 01/24/2022] [Accepted: 01/27/2022] [Indexed: 11/17/2022]
Abstract
The phylloplane is an integrated part of green infrastructure which interacts with plant health. Taxonomic characterization of the phylloplane with the aim to link it to ecosystem functioning under anthropogenic pressure is not sufficient because only active microorganisms drive biochemical processes. Activity of the phylloplane remains largely overlooked. We aimed to study the interactions among the biological characteristics of the phylloplane: taxonomic diversity, functional diversity and activity, and the pollution grade. Leaves of Betula pendula were sampled in Moscow at increasing distances from the road. For determination of phylloplane activity and functional diversity, a MicroResp tool was utilized. Taxonomic diversity of the phylloplane was assessed with a combination of microorganism cultivation and molecular techniques. Increase of anthropogenic load resulted in higher microbial respiration and lower DNA amount, which could be viewed as relative inefficiency of phylloplane functioning in comparison to less contaminated areas. Taxonomic diversity declined with road vicinity, similar to the functional diversity pattern. The content of Zn in leaf dust better explained the variation in phylloplane activity and the amount of DNA. Functional diversity was linked to variation in nutrient content. The fraction of pathogenic fungi of the phylloplane was not correlated with any of the studied elements, while it was significantly high at the roadsides. The bacterial classes Gammaproteobacteria and Cytophagia, as well as the Dothideomycetes class of fungi, are exposed to the maximal effect of distance from the highway. This study demonstrated the sensitivity of the phylloplane to road vicinity, which combines the effects of contaminants (mainly Zn according to this study) and potential stressful air microclimatic conditions (e.g., low relative air humidity, high temperature, and UV level). Microbial activity and taxonomic diversity of the phylloplane could be considered as an additional tool for bioindication.
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25
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Battache M, Lebrun MH, Sakai K, Soudière O, Cambon F, Langin T, Saintenac C. Blocked at the Stomatal Gate, a Key Step of Wheat Stb16q-Mediated Resistance to Zymoseptoria tritici. FRONTIERS IN PLANT SCIENCE 2022; 13:921074. [PMID: 35832231 PMCID: PMC9271956 DOI: 10.3389/fpls.2022.921074] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 06/03/2022] [Indexed: 05/11/2023]
Abstract
Septoria tritici blotch (STB), caused by the fungus Zymoseptoria tritici, is among the most threatening wheat diseases in Europe. Genetic resistance remains one of the main environmentally sustainable strategies to efficiently control STB. However, the molecular and physiological mechanisms underlying resistance are still unknown, limiting the implementation of knowledge-driven management strategies. Among the 22 known major resistance genes (Stb), the recently cloned Stb16q gene encodes a cysteine-rich receptor-like kinase conferring a full broad-spectrum resistance against Z. tritici. Here, we showed that an avirulent Z. tritici inoculated on Stb16q quasi near isogenic lines (NILs) either by infiltration into leaf tissues or by brush inoculation of wounded tissues partially bypasses Stb16q-mediated resistance. To understand this bypass, we monitored the infection of GFP-labeled avirulent and virulent isolates on Stb16q NILs, from germination to pycnidia formation. This quantitative cytological analysis revealed that 95% of the penetration attempts were unsuccessful in the Stb16q incompatible interaction, while almost all succeeded in compatible interactions. Infectious hyphae resulting from the few successful penetration events in the Stb16q incompatible interaction were arrested in the sub-stomatal cavity of the primary-infected stomata. These results indicate that Stb16q-mediated resistance mainly blocks the avirulent isolate during its stomatal penetration into wheat tissue. Analyses of stomatal aperture of the Stb16q NILs during infection revealed that Stb16q triggers a temporary stomatal closure in response to an avirulent isolate. Finally, we showed that infiltrating avirulent isolates into leaves of the Stb6 and Stb9 NILs also partially bypasses resistances, suggesting that arrest during stomatal penetration might be a common major mechanism for Stb-mediated resistances.
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Affiliation(s)
- Mélissa Battache
- Université Clermont Auvergne, INRAE, GDEC, Clermont-Ferrand, France
| | - Marc-Henri Lebrun
- Université Paris-Saclay, INRAE, UR BIOGER, Thiverval-Grignon, France
| | - Kaori Sakai
- Université Paris-Saclay, INRAE, UR BIOGER, Thiverval-Grignon, France
| | - Olivier Soudière
- Université Clermont Auvergne, INRAE, GDEC, Clermont-Ferrand, France
| | - Florence Cambon
- Université Clermont Auvergne, INRAE, GDEC, Clermont-Ferrand, France
| | - Thierry Langin
- Université Clermont Auvergne, INRAE, GDEC, Clermont-Ferrand, France
| | - Cyrille Saintenac
- Université Clermont Auvergne, INRAE, GDEC, Clermont-Ferrand, France
- *Correspondence: Cyrille Saintenac,
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26
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Rosenvald K, Lõhmus K, Kukumägi M, Ostonen I, Kaasik A, Tullus T, Tullus A. The initial overreaction of carbon cycle to elevated atmospheric humidity levels off over time - a FAHM study in a young birch forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 796:148917. [PMID: 34271376 DOI: 10.1016/j.scitotenv.2021.148917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 06/30/2021] [Accepted: 07/05/2021] [Indexed: 06/13/2023]
Abstract
Ecosystem responses to climate change are mainly predicted based on short-term studies. However, the first response can be a temporary overreaction, different from the later response of the more acclimated ecosystem. The current paper is a follow-up study of our previous article, where the effect of elevated atmospheric humidity on forest ecosystem carbon (C) balance was studied in a young silver birch (Betula pendula Roth) forest after two years of humidification. Here, we present the C balance of the same forest measured two years later when humidification treatment had been performed for four years. We revealed that the higher C sequestration capacity of the humidified birch forest ecosystem was an initial overreaction, which levelled off after four years of humidification, when the ecosystem became more acclimated to wetter conditions. Understorey production reacted rapidly and strongly by increasing belowground production more than twofold, but this reaction ceased after four years of humidification treatment. Trees responded to a lesser extent, and the initially decreased aboveground growth was recovered after four years of humidification, when the biomass allocation to tree fine-roots was increased. Our results showed that at early forest age, understorey plant production dominated in the whole ecosystem C sequestration capacity. But in the later stage, the most important C sink was biomass production of birches, and since the tree biomass production no longer differed between the treatments, C sequestration of the whole ecosystem did not differ either. The findings confirm that a preliminary reaction of an ecosystem can be different from the later response, which needs to be taken into account when prognosing the climate change consequences for carbon sequestration.
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Affiliation(s)
- Katrin Rosenvald
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu 51003, Estonia.
| | - Krista Lõhmus
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu 51003, Estonia.
| | - Mai Kukumägi
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu 51003, Estonia.
| | - Ivika Ostonen
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu 51003, Estonia.
| | - Ants Kaasik
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu 51003, Estonia.
| | - Tea Tullus
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Kreutzwaldi 5, Tartu 51006, Estonia.
| | - Arvo Tullus
- Institute of Ecology and Earth Sciences, University of Tartu, Vanemuise 46, Tartu 51003, Estonia.
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27
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Zhang D, Du Q, Sun P, Lou J, Li X, Li Q, Wei M. Physiological and Transcriptomic Analyses Revealed the Implications of Abscisic Acid in Mediating the Rate-Limiting Step for Photosynthetic Carbon Dioxide Utilisation in Response to Vapour Pressure Deficit in Solanum Lycopersicum (Tomato). FRONTIERS IN PLANT SCIENCE 2021; 12:745110. [PMID: 34858453 PMCID: PMC8631768 DOI: 10.3389/fpls.2021.745110] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 09/24/2021] [Indexed: 06/13/2023]
Abstract
The atmospheric vapour pressure deficit (VPD) has been demonstrated to be a significant environmental factor inducing plant water stress and affecting plant photosynthetic productivity. Despite this, the rate-limiting step for photosynthesis under varying VPD is still unclear. In the present study, tomato plants were cultivated under two contrasting VPD levels: high VPD (3-5 kPa) and low VPD (0.5-1.5 kPa). The effect of long-term acclimation on the short-term rapid VPD response was examined across VPD ranging from 0.5 to 4.5 kPa. Quantitative photosynthetic limitation analysis across the VPD range was performed by combining gas exchange and chlorophyll fluorescence. The potential role of abscisic acid (ABA) in mediating photosynthetic carbon dioxide (CO2) uptake across a series of VPD was evaluated by physiological and transcriptomic analyses. The rate-limiting step for photosynthetic CO2 utilisation varied with VPD elevation in tomato plants. Under low VPD conditions, stomatal and mesophyll conductance was sufficiently high for CO2 transport. With VPD elevation, plant water stress was gradually pronounced and triggered rapid ABA biosynthesis. The contribution of stomatal and mesophyll limitation to photosynthesis gradually increased with an increase in the VPD. Consequently, the low CO2 availability inside chloroplasts substantially constrained photosynthesis under high VPD conditions. The foliar ABA content was negatively correlated with stomatal and mesophyll conductance for CO2 diffusion. Transcriptomic and physiological analyses revealed that ABA was potentially involved in mediating water transport and photosynthetic CO2 uptake in response to VPD variation. The present study provided new insights into the underlying mechanism of photosynthetic depression under high VPD stress.
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Affiliation(s)
- Dalong Zhang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
- State Key Laboratory of Crop Biology, Tai'an, China
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture, Beijing, China
| | - Qingjie Du
- College of Horticulture, Henan Agricultural University, Zhengzhou, China
| | - Po Sun
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
| | - Jie Lou
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
| | - Xiaotian Li
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
| | - Qingming Li
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
- State Key Laboratory of Crop Biology, Tai'an, China
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture, Beijing, China
| | - Min Wei
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, China
- State Key Laboratory of Crop Biology, Tai'an, China
- Scientific Observing and Experimental Station of Environment Controlled Agricultural Engineering in Huang-Huai-Hai Region, Ministry of Agriculture, Beijing, China
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28
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Extending Shelf Life and Maintaining Quality of Tomato Fruit by Calcium Chloride, Hydrogen Peroxide, Chitosan, and Ozonated Water. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7090309] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Tomatoes are perishable fruit that makes them deteriorate rapidly during the post-harvest chain. Therefore, the effect of calcium chloride (CaCl2), chitosan, hydrogen peroxide (H2O2), and ozonated water on the storage abil\ity and quality of tomato fruit (Solanumlycopersicum L. cv. 448) stored at 10 °C for 28 d was studied. Weight loss, firmness, fruit color, total soluble solids (TSS), titratable acidity, total carotenoids, and ascorbic acid content (AsA) of treated tomato fruit were recorded. Our results revealed that all tested treatments significantly extended the shelf-life and maintained quality of tomato fruit compared to the control. Chitosan and CaCl2 were the most effective treatments in maintaining quality attributes. Furthermore, a correlation study suggested that AsA and total carotenoids played a vital role in conserving tomato fruit quality during storage. PC1 had strong positive loading for pH, appearance, firmness, AsA, TSS, carotene, fruit color (L* & b*) and a strong negative loading for lycopene content, color (a), weight loss, and color index. PC2 had high positive loading for total acidity and total sugar content.
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29
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Leaf Transcriptome Analysis of Broomcorn Millet Uncovers Key Genes and Pathways in Response to Sporisorium destruens. Int J Mol Sci 2021; 22:ijms22179542. [PMID: 34502461 PMCID: PMC8430493 DOI: 10.3390/ijms22179542] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/19/2021] [Accepted: 08/27/2021] [Indexed: 01/26/2023] Open
Abstract
Broomcorn millet (Panicum miliaceum L.) affected by smut (caused by the pathogen Sporisorium destruens) has reduced production yields and quality. Determining the tolerance of broomcorn millet varieties is essential for smut control. This study focuses on the differences in the phenotypes, physiological characteristics, and transcriptomes of resistant and susceptible broomcorn millet varieties under Sporisorium destruens stress. In diseased broomcorn millet, the plant height and stem diameter were reduced, while the number of nodes increased. After infection, the activities of superoxide dismutase and peroxidase decreased, and malondialdehyde and relative chlorophyll content (SPAD) decreased. Transcriptome analysis showed 514 and 5452 differentially expressed genes (DEGs) in the resistant and susceptible varieties, respectively. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of DEGs showed that pathways related to plant disease resistance, such as phenylpropanoid biosynthesis, plant–pathogen interaction, and plant hormone signal transduction, were significantly enriched. In addition, the transcriptome changes of cluster leaves and normal leaves in diseased broomcorn millet were analysed. Gene ontology and KEGG enrichment analyses indicated that photosynthesis played an important role in both varieties. These findings lay a foundation for future research on the molecular mechanism of the interaction between broomcorn millet and Sporisorium destruens.
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30
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Moosavi-Nezhad M, Salehi R, Aliniaeifard S, Tsaniklidis G, Woltering EJ, Fanourakis D, Żuk-Gołaszewska K, Kalaji HM. Blue Light Improves Photosynthetic Performance during Healing and Acclimatization of Grafted Watermelon Seedlings. Int J Mol Sci 2021; 22:ijms22158043. [PMID: 34360809 PMCID: PMC8347074 DOI: 10.3390/ijms22158043] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 06/11/2021] [Accepted: 06/24/2021] [Indexed: 11/16/2022] Open
Abstract
To investigate the importance of light on healing and acclimatization, in the present study, grafted watermelon seedlings were exposed to darkness (D) or light, provided by blue (B), red (R), a mixture of R (68%) and B (RB), or white (W; 35% B, 49% intermediate spectra, 16% R) LEDs for 12 days. Survival ratio, root and shoot growth, soluble carbohydrate content, photosynthetic pigments content, and photosynthetic performance were evaluated. Seedling survival was not only strongly limited in D but the survived seedlings had an inferior shoot and root development, reduced chlorophyll content, and attenuated photosynthetic efficiency. RB-exposed seedlings had a less-developed root system. R-exposed seedlings showed leaf epinasty, and had the smallest leaf area, reduced chlorophyll content, and suppressed photosynthetic apparatus performance. The R-exposed seedlings contained the highest amount of soluble carbohydrate and together with D-exposed seedlings the lowest amount of chlorophyll in their scions. B-exposed seedlings showed the highest chlorophyll content and improved overall PSII photosynthetic functioning. W-exposed seedling had the largest leaf area, and closely resembled the photosynthetic properties of RB-exposed seedlings. We assume that, during healing of grafted seedlings monochromatic R light should be avoided. Instead, W and monochromatic B light may be willingly adopted due to their promoting effect on shoot, pigments content, and photosynthetic efficiency.
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Affiliation(s)
- Moein Moosavi-Nezhad
- Department of Horticultural Sciences, Campus of Agriculture and Natural Resources, University of Tehran, Karaj P.O. Box 31587-77871, Iran;
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, Tehran P.O. Box 33916-53755, Iran
| | - Reza Salehi
- Department of Horticultural Sciences, Campus of Agriculture and Natural Resources, University of Tehran, Karaj P.O. Box 31587-77871, Iran;
- Correspondence: (R.S.); (S.A.); Tel.: +98-263-224-8721 (R.S.); +98-212-252-0188 (S.A.)
| | - Sasan Aliniaeifard
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, Tehran P.O. Box 33916-53755, Iran
- Correspondence: (R.S.); (S.A.); Tel.: +98-263-224-8721 (R.S.); +98-212-252-0188 (S.A.)
| | - Georgios Tsaniklidis
- Laboratory of Vegetable Crops, Institute of Olive Tree, Subtropical Plants and Viticulture, Hellenic Agricultural Organization ‘ELGO DIMITRA’, 73100 Chania, Greece;
| | - Ernst J. Woltering
- Wageningen Food & Biobased Research, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands;
- Horticulture & Product Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Dimitrios Fanourakis
- Laboratory of Quality and Safety of Agricultural Products, Landscape and Environment, Department of Agriculture, School of Agricultural Sciences, Hellenic Mediterranean University, Estavromenos, 71004 Heraklion, Greece;
| | - Krystyna Żuk-Gołaszewska
- Department of Agrotechnology and Agribusiness, Faculty of Agriculture and Forestry, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 8, 10-718 Olsztyn, Poland;
| | - Hazem M. Kalaji
- Department of Plant Physiology, Institute of Biology, Warsaw, University of Life Sciences SGGW, 02-776 Warsaw, Poland;
- Institute of Technology and Life Sciences—National Research Institute, Falenty, Al. Hrabska 3, 05-090 Raszyn, Poland
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Seif M, Aliniaeifard S, Arab M, Mehrjerdi MZ, Shomali A, Fanourakis D, Li T, Woltering E. Monochromatic red light during plant growth decreases the size and improves the functionality of stomata in chrysanthemum. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:515-528. [PMID: 33453752 DOI: 10.1071/fp20280] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 12/15/2020] [Indexed: 06/12/2023]
Abstract
Light emitting diodes (LEDs) now enable precise light quality control. Prior to commercialisation however, the plant response to the resultant light quality regime ought to be addressed. The response was examined here in chrysanthemum by evaluating growth, chlorophyll fluorescence (before and following water deficit), as well as stomatal anatomy (density, size, pore dimensions and aperture heterogeneity) and closing ability. Plants were grown under blue (B), red (R), a mixture of R (70%) and B (RB), or white (W; 41% B, 39% intermediate spectrum, 20% R) light LEDs. Although R light promoted growth, it also caused leaf deformation (epinasty) and disturbed the photosynthetic electron transport system. The largest stomatal size was noted following growth under B light, whereas the smallest under R light. The largest stomatal density was observed under W light. Monochromatic R light stimulated both the rate and the degree of stomatal closure in response to desiccation compared with the other light regimes. We conclude that stomatal size is mainly controlled by the B spectrum, whereas a broader spectral range is important for determining stomatal density. Monochromatic R light enhanced stomatal ability to regulate water loss upon desiccation.
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Affiliation(s)
- Mehdi Seif
- Photosynthesis laboratory, Department of Horticulture, Aburaihan campus, University of Tehran, Tehran, Iran
| | - Sasan Aliniaeifard
- Photosynthesis laboratory, Department of Horticulture, Aburaihan campus, University of Tehran, Tehran, Iran; and Corresponding author. ;
| | - Mostafa Arab
- Photosynthesis laboratory, Department of Horticulture, Aburaihan campus, University of Tehran, Tehran, Iran
| | - Mahboobeh Zare Mehrjerdi
- Photosynthesis laboratory, Department of Horticulture, Aburaihan campus, University of Tehran, Tehran, Iran
| | - Aida Shomali
- Photosynthesis laboratory, Department of Horticulture, Aburaihan campus, University of Tehran, Tehran, Iran
| | - Dimitrios Fanourakis
- Hellenic Mediterranean University, Department of Agriculture, Laboratory of Quality and Safety of Agricultural Products, Landscape and Environment, Specialisation of Floriculture and Landscape Architecture, Estavromenos, Heraklion, Crete, 71004, Greece; and Corresponding author. ;
| | - Tao Li
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Ernst Woltering
- Wageningen Food and Biobased Research, Bornse Weilanden 9, 6708 WG Wageningen, Netherlands; and Wageningen University, Horticulture and Product Physiology, Droevendaalsesteeg 1, 6708 PB Wageningen, Netherlands
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32
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Kupper P, Kaasik A, Kukumägi M, Rohula-Okunev G, Rusalepp L, Sõber A. Predawn leaf conductance depends on previous day irradiance but is not related to growth in aspen saplings grown under artificially manipulated air humidity. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:422-433. [PMID: 33287949 DOI: 10.1071/fp20254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 11/17/2020] [Indexed: 06/12/2023]
Abstract
Recent studies have suggested that predawn stomatal opening may enhance early-morning photosynthesis (A) and improve the relative growth rate of trees. However, the causality between night-time stomatal conductance, A, and tree growth is disputable because stomatal opening in darkness can be mediated by previous day photosynthate loads and might be a consequence of growth-related processes like dark respiration (R). To identify linkages between night-time leaf conductance (gl_night), A, R, and tree growth, we conducted an experiment in hybrid aspen saplings grown under different air relative humidity (RH) conditions and previous day irradiance level (IR_pday). Predawn leaf conductance (gl_predawn) depended on RH, IR_pday and R (P < 0.05), whereas early-morning gross A (Agross_PAR500) depended on IR_pday and gl_predawn (P < 0.001). Daytime net A was positively related to Agross_PAR500 and leaf [N] (P < 0.05). Tree diameter and height increment correlated positively with gl at the beginning and middle of the night (P < 0.05) but not before dawn. Although our results demonstrate that gl_night was related to tree growth, the relationship was not determined by R. The linkage between gl_predawn and Agross_PAR500 was modified by IR_pday, indicating that daily CO2 assimilation probably provides feedback for stomatal opening before dawn.
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Affiliation(s)
- Priit Kupper
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia; and Corresponding author.
| | - Ants Kaasik
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia
| | - Mai Kukumägi
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia
| | | | - Linda Rusalepp
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia
| | - Anu Sõber
- Institute of Ecology and Earth Sciences, University of Tartu, 51005 Tartu, Estonia
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Xiong Z, Dun Z, Wang Y, Yang D, Xiong D, Cui K, Peng S, Huang J. Effect of Stomatal Morphology on Leaf Photosynthetic Induction Under Fluctuating Light in Rice. FRONTIERS IN PLANT SCIENCE 2021; 12:754790. [PMID: 35185944 PMCID: PMC8851391 DOI: 10.3389/fpls.2021.754790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Accepted: 12/20/2021] [Indexed: 05/06/2023]
Abstract
Plants are often confronted with light fluctuations from seconds to minutes due to altering sun angles, mutual shading, and clouds under natural conditions, which causes a massive carbon loss and water waste. The effect of stomatal morphology on the response of leaf gas exchange to fluctuating light remains disputable. In this study, we investigated the differences in leaf stomatal morphology and photosynthetic induction across twelve rice genotypes after a stepwise increase in light intensity. A negative correlation was observed between stomatal size and density across rice genotypes. Smaller and denser stomata contributed to a faster stomatal response under fluctuating light. Plants with faster stomatal opening also showed faster photosynthetic induction and higher biomass accumulation but lower intrinsic water use efficiency ( i WUE) under fluctuating light. Moreover, stomatal morphology seemed to have less effect on the initial and final stomatal conductance, and there was a minimal correlation between steady-state and non-steady-state stomatal conductance among different rice genotypes. These results highlight the important role of stomatal morphology in regulating photosynthetic efficiency and plant growth under fluctuating light conditions. To simultaneously enhance leaf i WUE when improving the photosynthetic efficiency under fluctuating light, it may be necessary to take biochemical processes into account in the future.
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Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance. PLANTS 2020; 9:plants9111613. [PMID: 33233729 PMCID: PMC7699937 DOI: 10.3390/plants9111613] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 11/16/2020] [Accepted: 11/17/2020] [Indexed: 12/17/2022]
Abstract
The CO2 and water vapor exchange between leaf and atmosphere are relevant for plant physiology. This process is done through the stomata. These structures are fundamental in the study of plants since their properties are linked to the evolutionary process of the plant, as well as its environmental and phytohormonal conditions. Stomatal detection is a complex task due to the noise and morphology of the microscopic images. Although in recent years segmentation algorithms have been developed that automate this process, they all use techniques that explore chromatic characteristics. This research explores a unique feature in plants, which corresponds to the stomatal spatial distribution within the leaf structure. Unlike segmentation techniques based on deep learning tools, we emphasize the search for an optimal threshold level, so that a high percentage of stomata can be detected, independent of the size and shape of the stomata. This last feature has not been reported in the literature, except for those results of geometric structure formation in the salt formation and other biological formations.
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An Automatic Method for Stomatal Pore Detection and Measurement in Microscope Images of Plant Leaf Based on a Convolutional Neural Network Model. FORESTS 2020. [DOI: 10.3390/f11090954] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Stomata are microscopic pores on the plant epidermis that regulate the water content and CO2 levels in leaves. Thus, they play an important role in plant growth and development. Currently, most of the common methods for the measurement of pore anatomy parameters involve manual measurement or semi-automatic analysis technology, which makes it difficult to achieve high-throughput and automated processing. This paper presents a method for the automatic segmentation and parameter calculation of stomatal pores in microscope images of plant leaves based on deep convolutional neural networks. The proposed method uses a type of convolutional neural network model (Mask R-CNN (region-based convolutional neural network)) to obtain the contour coordinates of the pore regions in microscope images of leaves. The anatomy parameters of pores are then obtained by ellipse fitting technology, and the quantitative analysis of pore parameters is implemented. Stomatal microscope image datasets for black poplar leaves were obtained using a large depth-of-field microscope observation system, the VHX-2000, from Keyence Corporation. The images used in the training, validation, and test sets were taken randomly from the datasets (562, 188, and 188 images, respectively). After 10-fold cross validation, the 188 test images were found to contain an average of 2278 pores (pore widths smaller than 0.34 μm (1.65 pixels) were considered to be closed stomata), and an average of 2201 pores were detected by our network with a detection accuracy of 96.6%, and the intersection of union (IoU) of the pores was 0.82. The segmentation results of 2201 stomatal pores of black poplar leaves showed that the average measurement accuracies of the (a) pore length, (b) pore width, (c) area, (d) eccentricity, and (e) degree of stomatal opening, with a ratio of width-to-maximum length of a stomatal pore, were (a) 94.66%, (b) 93.54%, (c) 90.73%, (d) 99.09%, and (e) 92.95%, respectively. The proposed stomatal pore detection and measurement method based on the Mask R-CNN can automatically measure the anatomy parameters of pores in plants, thus helping researchers to obtain accurate stomatal pore information for leaves in an efficient and simple way.
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