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For: Izmalkova TY, Mavrodi DV, Sokolov SL, Kosheleva IA, Smalla K, Thomas CM, Boronin AM. Molecular classification of IncP-9 naphthalene degradation plasmids. Plasmid 2006;56:1-10. [PMID: 16472859 DOI: 10.1016/j.plasmid.2005.12.004] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2005] [Revised: 12/19/2005] [Accepted: 12/24/2005] [Indexed: 10/25/2022]
Number Cited by Other Article(s)
1
Kang WN, Jin L, Ma HY, Li GQ. Integrated Microbiome-Metabolome Analysis Reveals Stage-Dependent Alterations in Bacterial Degradation of Aromatics in Leptinotarsa decemlineata. Front Physiol 2021;12:739800. [PMID: 34658924 PMCID: PMC8515180 DOI: 10.3389/fphys.2021.739800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 08/16/2021] [Indexed: 11/16/2022]  Open
2
Alanin KWS, Jørgensen TS, Browne PD, Petersen B, Riber L, Kot W, Hansen LH. An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms. Plasmid 2021;115:102576. [PMID: 33872684 DOI: 10.1016/j.plasmid.2021.102576] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Revised: 04/12/2021] [Accepted: 04/12/2021] [Indexed: 10/21/2022]
3
Pozdnyakova-Filatova I, Petrikov K, Vetrova A, Frolova A, Streletskii R, Zakharova M. The Naphthalene Catabolic Genes of Pseudomonas putida BS3701: Additional Regulatory Control. Front Microbiol 2020;11:1217. [PMID: 32582120 PMCID: PMC7291925 DOI: 10.3389/fmicb.2020.01217] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Accepted: 05/13/2020] [Indexed: 11/13/2022]  Open
4
Izmalkova TY, Gafarov AB, Sazonova OI, Sokolov SL, Kosheleva IA, Boronin AM. Diversity of Oil-Degrading Microorganisms in the Gulf of Finland (Baltic Sea) in Spring and in Summer. Microbiology (Reading) 2018. [DOI: 10.1134/s0026261718020054] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
5
Leite DCA, Salles JF, Calderon EN, van Elsas JD, Peixoto RS. Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont. Ecol Evol 2018;8:1818-1832. [PMID: 29435256 PMCID: PMC5792611 DOI: 10.1002/ece3.3717] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 11/15/2017] [Accepted: 11/16/2017] [Indexed: 12/24/2022]  Open
6
Puntus IF, Vlasova EP, Sokolov AP, Zakharchenko NS, Funtikova TV. Properties of non-homologous salicylate hydroxylases of pseudomonus bacteria. APPL BIOCHEM MICRO+ 2015. [DOI: 10.1134/s0003683815020155] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
7
Jørgensen TS, Kiil AS, Hansen MA, Sørensen SJ, Hansen LH. Current strategies for mobilome research. Front Microbiol 2015;5:750. [PMID: 25657641 PMCID: PMC4302988 DOI: 10.3389/fmicb.2014.00750] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 12/10/2014] [Indexed: 11/30/2022]  Open
8
Kosheleva IA, Sazonova OI, Izmalkova TY, Boronin AM. Occurrence of the SAL+ phenotype in soil pseudomonads. Microbiology (Reading) 2014. [DOI: 10.1134/s0026261714060101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
9
Dealtry S, Ding GC, Weichelt V, Dunon V, Schlüter A, Martini MC, Papa MFD, Lagares A, Amos GCA, Wellington EMH, Gaze WH, Sipkema D, Sjöling S, Springael D, Heuer H, van Elsas JD, Thomas C, Smalla K. Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats. PLoS One 2014;9:e89922. [PMID: 24587126 PMCID: PMC3933701 DOI: 10.1371/journal.pone.0089922] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2013] [Accepted: 01/25/2014] [Indexed: 11/24/2022]  Open
10
Izmalkova TY, Sazonova OI, Kosheleva IA, Boronin AM. Phylogenetic analysis of the genes for naphthalene and phenanthrene degradation in Burkholderia sp. strains. RUSS J GENET+ 2013. [DOI: 10.1134/s1022795413060033] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
11
Panov AV, Esikova TZ, Sokolov SL, Kosheleva IA, Boronin AM. Influence of soil pollution on the composition of a microbial community. Microbiology (Reading) 2013. [DOI: 10.1134/s0026261713010116] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
12
Volkova OV, Panov AV, Kosheleva IA, Boronin AM. Classification of IncP-7 plasmids based on structural diversity of their basic replicons. Mol Biol 2013. [DOI: 10.1134/s0026893313020167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
13
Panov AV, Volkova OV, Puntus IF, Esikova TZ, Kosheleva IA, Boronin AM. scpA, a new salicylate hydroxylase gene localized in salicylate/caprolactam degradation plasmids. Mol Biol 2013. [DOI: 10.1134/s0026893313010147] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
14
Babin D, Ding GC, Pronk GJ, Heister K, Kögel-Knabner I, Smalla K. Metal oxides, clay minerals and charcoal determine the composition of microbial communities in matured artificial soils and their response to phenanthrene. FEMS Microbiol Ecol 2013;86:3-14. [DOI: 10.1111/1574-6941.12058] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2012] [Revised: 12/06/2012] [Accepted: 12/09/2012] [Indexed: 11/30/2022]  Open
15
The organization of naphthalene degradation genes in Pseudomonas putida strain AK5. Res Microbiol 2012;164:244-53. [PMID: 23266498 DOI: 10.1016/j.resmic.2012.12.007] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Accepted: 12/07/2012] [Indexed: 11/21/2022]
16
Heuer H, Smalla K. Plasmids foster diversification and adaptation of bacterial populations in soil. FEMS Microbiol Rev 2012;36:1083-104. [DOI: 10.1111/j.1574-6976.2012.00337.x] [Citation(s) in RCA: 194] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Revised: 10/15/2011] [Accepted: 02/24/2012] [Indexed: 11/26/2022]  Open
17
Miyakoshi M, Shintani M, Inoue K, Terabayashi T, Sai F, Ohkuma M, Nojiri H, Nagata Y, Tsuda M. ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids. Environ Microbiol 2012;14:2946-59. [PMID: 22925377 DOI: 10.1111/j.1462-2920.2012.02861.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2012] [Revised: 07/26/2012] [Accepted: 07/28/2012] [Indexed: 01/09/2023]
18
Volkova OV, Kosheleva IA, Boronin AM. Structure of replication initiation region in Pseudomonas IncP-7 streptomycin resistance plasmid Rms148. Mol Biol 2012. [DOI: 10.1134/s0026893312030120] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
19
Li L, Norman A, Hansen L, Sorensen S. Metamobilomics – expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing. Clin Microbiol Infect 2012;18 Suppl 4:5-7. [DOI: 10.1111/j.1469-0691.2012.03862.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
20
Ding GC, Heuer H, He Z, Xie J, Zhou J, Smalla K. More functional genes and convergent overall functional patterns detected by geochip in phenanthrene-spiked soils. FEMS Microbiol Ecol 2012;82:148-56. [DOI: 10.1111/j.1574-6941.2012.01413.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2012] [Revised: 05/02/2012] [Accepted: 05/08/2012] [Indexed: 11/30/2022]  Open
21
Occurrence of plasmids in the aromatic degrading bacterioplankton of the baltic sea. Genes (Basel) 2011;2:853-68. [PMID: 24710296 PMCID: PMC3927600 DOI: 10.3390/genes2040853] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2011] [Revised: 09/23/2011] [Accepted: 10/20/2011] [Indexed: 11/21/2022]  Open
22
Sazonova OI, Izmalkova TY, Kosheleva IA, Boronin AM. Salicylate degradation by Pseudomonas putida strains not involving the “Classical” nah2 operon. Microbiology (Reading) 2008. [DOI: 10.1134/s002626170806009x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
23
Sevastsyanovich YR, Krasowiak R, Bingle LEH, Haines AS, Sokolov SL, Kosheleva IA, Leuchuk AA, Titok MA, Smalla K, Thomas CM. Diversity of IncP-9 plasmids of Pseudomonas. MICROBIOLOGY (READING, ENGLAND) 2008;154:2929-2941. [PMID: 18832300 PMCID: PMC2885752 DOI: 10.1099/mic.0.2008/017939-0] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2008] [Revised: 04/30/2008] [Accepted: 06/30/2008] [Indexed: 11/18/2022]
24
Huang WE, Stoecker K, Griffiths R, Newbold L, Daims H, Whiteley AS, Wagner M. Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function. Environ Microbiol 2007;9:1878-89. [PMID: 17635536 DOI: 10.1111/j.1462-2920.2007.01352.x] [Citation(s) in RCA: 217] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
25
Yano H, Garruto CE, Sota M, Ohtsubo Y, Nagata Y, Zylstra GJ, Williams PA, Tsuda M. Complete Sequence Determination Combined with Analysis of Transposition/Site-specific Recombination Events to Explain Genetic Organization of IncP-7 TOL Plasmid pWW53 and Related Mobile Genetic Elements. J Mol Biol 2007;369:11-26. [PMID: 17408691 DOI: 10.1016/j.jmb.2007.02.098] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2006] [Revised: 02/22/2007] [Accepted: 02/26/2007] [Indexed: 11/19/2022]
26
Ono A, Miyazaki R, Sota M, Ohtsubo Y, Nagata Y, Tsuda M. Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches. Appl Microbiol Biotechnol 2006;74:501-10. [PMID: 17096121 DOI: 10.1007/s00253-006-0671-4] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2006] [Revised: 09/06/2006] [Accepted: 09/10/2006] [Indexed: 10/23/2022]
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