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Albavera-Mata A, Prakash P, Gibson JB, Fonseca E, Ren S, Zhang XG, Cheng HP, Shatruk M, Trickey SB, Hennig RG. Discovery of Spin-Crossover Materials with Equivariant Graph Neural Networks and Relevance-Based Classification. J Chem Theory Comput 2025; 21:3913-3921. [PMID: 40168601 DOI: 10.1021/acs.jctc.4c01690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2025]
Abstract
Swift discovery of spin-crossover materials for their potential application in electronic and quantum devices requires techniques that enable efficient identification of suitable candidates. To this end, we screened the Cambridge Structural Database to develop a specialized database of 1439 materials and computed spin-switching energies from density functional theory for each material. The database was used to train an equivariant graph convolution neural network to predict the magnitude of the spin-conversion energy. A test mean absolute error was 360 meV. For candidate identification, we equipped the system with a relevance-based classifier. This approach leads to a nearly 4-fold improvement in identifying potential spin-crossover systems of interest as compared to conventional high-throughput screening.
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Affiliation(s)
- Angel Albavera-Mata
- Department of Physics, University of Florida, Gainesville, Florida 32611, United States
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
| | - Pawan Prakash
- Department of Physics, University of Florida, Gainesville, Florida 32611, United States
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
| | - Jason B Gibson
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
- Quantum Theory Project, University of Florida, Gainesville, Florida 32611, United States
| | - Eric Fonseca
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Sijin Ren
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Xiao-Guang Zhang
- Department of Physics, University of Florida, Gainesville, Florida 32611, United States
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
| | - Hai-Ping Cheng
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Physics, Northeastern University, Boston, Massachusetts 02115, United States
| | - Michael Shatruk
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - S B Trickey
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Physics and Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - Richard G Hennig
- Center for Molecular Magnetic Quantum Materials, Gainesville, Florida 32611, United States
- Department of Materials Science and Engineering, University of Florida, Gainesville, Florida 32611, United States
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2
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Zang Y, Liu Y, Lu R, Yang Q, Wang B, Zhang M, Mao Y, Wang Z, Lum Y. Tuning Transition Metal 3d Spin state on Single-atom Catalysts for Selective Electrochemical CO 2 Reduction. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2025; 37:e2417034. [PMID: 40079062 PMCID: PMC12016740 DOI: 10.1002/adma.202417034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Revised: 02/13/2025] [Indexed: 03/14/2025]
Abstract
Tuning transition metal spin states potentially offers a powerful means to control electrocatalyst activity. However, implementing such a strategy in electrochemical CO2 reduction (CO2R) is challenging since rational design rules have yet to be elucidated. Here we show how the addition of P dopants to a ferromagnetic element (Fe, Co, and Ni) single-atom catalyst (SAC) can shift its spin state. For instance, with Fe SAC, P dopants enable a switch from low spin state (dx2- y2 0, dz2 0, dxz 2, dyz 1, dxy 2) in Fe-N4 to high spin state (dx2-y2 0, dxz 1, dyz 1, dz2 1, dxy 2) in Fe-N3-P. This is studied using a suite of characterization efforts, including X-ray absorption spectroscopy (XAS), electron spin resonance (ESR) spectroscopy, and superconducting quantum interference device (SQUID) measurements. When used for CO2R, the SAC with Fe-N3-P active sites yields > 90% Faradaic efficiency to CO over a wide potential window of ≈530 mV and a maximum CO partial current density of ≈600 mA cm-2. Density functional theory calculations reveal that high spin state Fe3+ exhibits enhanced electron back donation via the dxz/dyz-π* bond, which enhances *COOH adsorption and promotes CO formation. Taken together, the results show how the SAC spin state can be intentionally tuned to boost CO2R performance.
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Affiliation(s)
- Yipeng Zang
- Department of Chemical and Biomolecular EngineeringNational University of SingaporeSingapore117585Republic of Singapore
| | - Yan Liu
- School of Chemical SciencesUniversity of AucklandAuckland1010New Zealand
| | - Ruihu Lu
- School of Chemical SciencesUniversity of AucklandAuckland1010New Zealand
| | - Qin Yang
- Department of Chemical and Biomolecular EngineeringNational University of SingaporeSingapore117585Republic of Singapore
| | - Bingqing Wang
- Department of Chemical and Biomolecular EngineeringNational University of SingaporeSingapore117585Republic of Singapore
| | - Mingsheng Zhang
- Institute of Materials Research and Engineering (IMRE)Agency for ScienceTechnology and Research (A*STAR)2 Fusionopolis Way, Innovis #08‐03Singapore138634Republic of Singapore
| | - Yu Mao
- School of Chemical SciencesUniversity of AucklandAuckland1010New Zealand
| | - Ziyun Wang
- School of Chemical SciencesUniversity of AucklandAuckland1010New Zealand
| | - Yanwei Lum
- Department of Chemical and Biomolecular EngineeringNational University of SingaporeSingapore117585Republic of Singapore
- Institute of Materials Research and Engineering (IMRE)Agency for ScienceTechnology and Research (A*STAR)2 Fusionopolis Way, Innovis #08‐03Singapore138634Republic of Singapore
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3
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Radoń M, Drabik G, Hodorowicz M, Szklarzewicz J. Performance of quantum chemistry methods for a benchmark set of spin-state energetics derived from experimental data of 17 transition metal complexes (SSE17). Chem Sci 2024; 15:20189-20204. [PMID: 39574537 PMCID: PMC11577268 DOI: 10.1039/d4sc05471g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Accepted: 10/27/2024] [Indexed: 11/24/2024] Open
Abstract
Accurate prediction of spin-state energetics for transition metal (TM) complexes is a compelling problem in applied quantum chemistry, with enormous implications for modeling catalytic reaction mechanisms and computational discovery of materials. Computed spin-state energetics are strongly method-dependent and credible reference data are scarce, making it difficult to conduct conclusive computational studies of open-shell TM systems. Here, we present a novel benchmark set of first-row TM spin-state energetics, which is derived from experimental data of 17 complexes containing FeII, FeIII, CoII, CoIII, MnII, and NiII with chemically diverse ligands. The estimates of adiabatic or vertical spin-state splittings, which are obtained from spin crossover enthalpies or energies of spin-forbidden absorption bands, suitably back-corrected for the vibrational and environmental effects, are employed as reference values for benchmarking density functional theory (DFT) and wave function methods. The results demonstrate a high accuracy of the coupled-cluster CCSD(T) method, which features the mean absolute error (MAE) of 1.5 kcal mol-1 and maximum error of -3.5 kcal mol-1, and outperforms all the tested multireference methods: CASPT2, MRCI+Q, CASPT2/CC and CASPT2+δMRCI. Switching from Hartree-Fock to Kohn-Sham orbitals is not found to consistently improve the CCSD(T) accuracy. The best performing DFT methods are double-hybrids (PWPB95-D3(BJ), B2PLYP-D3(BJ)) with the MAEs below 3 kcal mol-1 and maximum errors within 6 kcal mol-1, whereas the DFT methods so far recommended for spin states (e.g., B3LYP*-D3(BJ) and TPSSh-D3(BJ)) are found to perform much worse with the MAEs of 5-7 kcal mol-1 and maximum errors beyond 10 kcal mol-1. This work is the first such extensive benchmark study of quantum chemistry methods for TM spin-state energetics making use of experimental reference data. The results are relevant for the proper choice of methods to characterize TM systems in computational catalysis and (bio)inorganic chemistry, and may also stimulate new developments in quantum-chemical or machine learning approaches.
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Affiliation(s)
- Mariusz Radoń
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
| | - Gabriela Drabik
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
- Jagiellonian University, Doctoral School of Exact and Natural Sciences Łojasiewicza 11 30-348 Kraków Poland
| | - Maciej Hodorowicz
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
| | - Janusz Szklarzewicz
- Jagiellonian University, Faculty of Chemistry Gronostajowa 2 30-387 Kraków Poland +48 12 686 24 89
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Chamkin AA, Chamkina ES. Assessment of the applicability of DFT methods to [Cp*Rh]-catalyzed hydrogen evolution processes. J Comput Chem 2024; 45:2624-2639. [PMID: 39052232 DOI: 10.1002/jcc.27468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Revised: 07/04/2024] [Accepted: 07/10/2024] [Indexed: 07/27/2024]
Abstract
The present computational study provides a benchmark of density functional theory (DFT) methods in describing hydrogen evolution processes catalyzed by [Cp*Rh]-containing organometallic complexes. A test set was composed of 26 elementary reactions featuring chemical transformations and bonding situations essential for the field, including the emerging concept of non-innocent Cp* behavior. Reference values were obtained from a highly accurate 3/4 complete basis set and 6/7 complete PNO space extrapolated DLPNO-CCSD(T) energies. The performance of lower-level extrapolation procedures was also assessed. We considered 84 density functionals (DF) (including 13 generalized gradient approximations (GGA), nine meta-GGAs, 33 hybrids, and 29 double-hybrids) and three composite methods (HF-3c, PBEh-3c, and r2SCAN-3c), combined with different types of dispersion corrections (D3(0), D3BJ, D4, and VV10). The most accurate approach is the PBE0-DH-D3BJ (MAD of 1.36 kcal mol-1) followed by TPSS0-D3BJ (MAD of 1.60 kcal mol-1). Low-cost r2SCAN-3c composite provides a less accurate but much faster alternative (MAD of 2.39 kcal mol-1). The widely used Minnesota-family M06-L, M06, and M06-2X DFs should be avoided (MADs of 3.70, 3.94, and 4.01 kcal mol-1, respectively).
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Affiliation(s)
- Aleksandr A Chamkin
- A.N.Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences, Moscow, Russia
| | - Elena S Chamkina
- A.N.Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences, Moscow, Russia
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5
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Hehn L, Deglmann P, Kühn M. Chelate Complexes of 3d Transition Metal Ions─A Challenge for Electronic-Structure Methods? J Chem Theory Comput 2024; 20:4545-4568. [PMID: 38805381 DOI: 10.1021/acs.jctc.3c01375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2024]
Abstract
Different electronic-structure methods were assessed for their ability to predict two important properties of the industrially relevant chelating agent nitrilotriacetic acid (NTA): its selectivity with respect to six different first-row transition metal ions and the spin-state energetics of its complex with Fe(III). The investigated methods encompassed density functional theory (DFT), the random phase approximation (RPA), coupled cluster (CC) theory, and the auxiliary-field quantum Monte Carlo (AFQMC) method, as well as the complete active space self-consistent field (CASSCF) method and the respective on-top methods: second-order N-electron valence state perturbation theory (NEVPT2) and multiconfiguration pair-density functional theory (MC-PDFT). Different strategies for selecting active spaces were explored, and the density matrix renormalization group (DMRG) approach was used to solve the largest active spaces. Despite somewhat ambiguous multi-reference diagnostics, most methods gave relatively good agreement with experimental data for the chemical reactions connected to the selectivity, which only involved transition-metal complexes in their high-spin state. CC methods yielded the highest accuracy followed by range-separated DFT and AFQMC. We discussed in detail that even higher accuracies can be obtained with NEVPT2, under the prerequisite that consistent active spaces along the entire chemical reaction can be selected, which was not the case for reactions involving Fe(III). A bigger challenge for electronic-structure methods was the prediction of the spin-state energetics, which additionally involved lower spin states that exhibited larger multi-reference diagnostics. Conceptually different, typically accurate methods ranging from CC theory via DMRG-NEVPT2 in combination with large active spaces to AFQMC agreed well that the high-spin state is energetically significantly favored over the other spin states. This was in contrast to most DFT functionals and RPA which yielded a smaller stabilization and some common DFT functionals and MC-PDFT even predicting the low-spin state to be energetically most favorable.
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Affiliation(s)
- Lukas Hehn
- Next Generation Computing, BASF SE, Pfalzgrafenstr. 1, 67061 Ludwigshafen, Germany
| | - Peter Deglmann
- Quantum Chemistry, BASF SE, Carl-Bosch-Str. 38, 67063 Ludwigshafen, Germany
| | - Michael Kühn
- Next Generation Computing, BASF SE, Pfalzgrafenstr. 1, 67061 Ludwigshafen, Germany
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6
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Drabik G, Radoń M. Approaching the Complete Basis Set Limit for Spin-State Energetics of Mononuclear First-Row Transition Metal Complexes. J Chem Theory Comput 2024; 20:3199-3217. [PMID: 38574194 PMCID: PMC11044276 DOI: 10.1021/acs.jctc.4c00092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 03/19/2024] [Accepted: 03/20/2024] [Indexed: 04/06/2024]
Abstract
Convergence to the complete basis set (CBS) limit is analyzed for the problem of spin-state energetics in mononuclear first-row transition metal (TM) complexes by taking under scrutiny a benchmark set of 18 energy differences between spin states for 13 chemically diverse TM complexes. The performance of conventional CCSD(T) and explicitly correlated CCSD(T)-F12a/b calculations in approaching the CCSD(T)/CBS limits is systematically studied. An economic computational protocol is developed based on the CCSD-F12a approximation and (here proposed) modified scaling of the perturbative triples term (T#). This computational protocol recovers the relative spin-state energetics of the benchmark set in excellent agreement with the reference CCSD(T)/CBS limits (mean absolute deviation of 0.4, mean signed deviation of 0.2, and maximum deviation of 0.8 kcal/mol) and enables performing canonical CCSD(T) calculations for mononuclear TM complexes sized up to ca. 50 atoms, which is illustrated by application to heme-related metalloporphyrins. Furthermore, a good transferability of the basis set incompleteness error (BSIE) is demonstrated for spin-state energetics computed using CCSD(T) and other wave function methods (MP2, CASPT2, CASPT2/CC, NEVPT2, and MRCI + Q), which justifies efficient focal-point approximations and simplifies the construction of multimethod benchmark studies.
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Affiliation(s)
- Gabriela Drabik
- Jagiellonian
University, Doctoral School
of Exact and Natural Sciences, Łojasiewicza 11, 30-348 Kraków, Poland
- Jagiellonian
University, Faculty of Chemistry, Gronostajowa 2, 30-387, Kraków Poland
| | - Mariusz Radoń
- Jagiellonian
University, Faculty of Chemistry, Gronostajowa 2, 30-387, Kraków Poland
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7
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Nain S, Mukhopadhyaya A, Ali ME. Unravelling the Highest Magnetic Anisotropy Among all the nd-Shells in [WCp2]0 Metallocene. Inorg Chem 2024; 63:7401-7411. [PMID: 38578709 DOI: 10.1021/acs.inorgchem.4c00437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2024]
Abstract
Single-molecule magnets (SMMs) with a large magnetization reversal barrier are predominated by the lanthanide systems due to their strong spin-orbit coupling (SOC). However, the transition metals have also emerged as potential contenders and the largest magnetic anisotropy has been identified for a cobalt system among any d-series-based SMMs (Bunting et al. Science 2018, 362, eaat7319). In this work, we have explored the magnetic anisotropy in highly axial ligand field systems of metallocene, having different d-subshell (3d4, 4d4, and 5d4). The wave function-based multireference methods including static and dynamic electron correlations have been employed to investigate the zero-field splitting (ZFS) parameters. Here, we report exceptionally large magnetic anisotropy for a 5d complex of [WCp2]0 with the highest energy barrier that is nearly twice as high as the previous record value for the Co complex. We have also observed that the axial ZFS parameter (D) is increasing down the group in the order of 3d < 4d < 5d, pertaining to a large SOC.
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Affiliation(s)
- Sakshi Nain
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab 140306, India
| | - Aritra Mukhopadhyaya
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab 140306, India
| | - Md Ehesan Ali
- Institute of Nano Science and Technology, Sector-81, Mohali, Punjab 140306, India
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8
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Pecak J, Talmazan RA, Svatunek D, Kirchner K, Podewitz M. Is Mn(I) More Promising Than Fe(II)-A Comparison of Mn vs Fe Complexes for Olefin Metathesis. Organometallics 2024; 43:457-466. [PMID: 38425381 PMCID: PMC10900517 DOI: 10.1021/acs.organomet.3c00398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 01/05/2024] [Accepted: 01/11/2024] [Indexed: 03/02/2024]
Abstract
Olefin metathesis is one of the most significant transformations in organic chemistry and is an excellent example for efficient homogeneous catalysis. Although most currently used catalysts are primarily based on 4d and 5d metals, cycloaddition and cycloreversion reactions can also be attributed to first-row transition metals, such as Fe. Surprisingly, the potential of Mn(I)-based catalysts for olefin metathesis has been unexplored despite their prominence in homogeneous catalysis and their diagonal relationship to Ru(II). In the present study, we have investigated the prospective capabilities of Mn complexes for cycloaddition and reversion reactions using density functional theory. Therefore, we have initially compared the literature known iron model systems and their isoelectronic Mn counterparts regarding their reactivity and electronic structure. Next, we constructed potential Mn complexes derived from synthetically accessible species, including carbonyl ligands and obeying octahedral geometry. Based on thermodynamic parameters and the calculation of electronic descriptors, we were able to validate the isodiagonal relationship. Our study serves as guidance for the experimental chemist.
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Affiliation(s)
- Jan Pecak
- Institute
of Materials Chemistry, TU Wien, Getreidemarkt 9, Vienna 1060, Austria
| | - Radu A. Talmazan
- Institute
of Materials Chemistry, TU Wien, Getreidemarkt 9, Vienna 1060, Austria
| | - Dennis Svatunek
- Institute
of Applied Synthetic Chemistry, TU Wien, Getreidemarkt 9, Vienna 1060, Austria
| | - Karl Kirchner
- Institute
of Applied Synthetic Chemistry, TU Wien, Getreidemarkt 9, Vienna 1060, Austria
| | - Maren Podewitz
- Institute
of Materials Chemistry, TU Wien, Getreidemarkt 9, Vienna 1060, Austria
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9
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Stylianakis I, Zervos N, Lii JH, Pantazis DA, Kolocouris A. Conformational energies of reference organic molecules: benchmarking of common efficient computational methods against coupled cluster theory. J Comput Aided Mol Des 2023; 37:607-656. [PMID: 37597063 PMCID: PMC10618395 DOI: 10.1007/s10822-023-00513-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 06/03/2023] [Indexed: 08/21/2023]
Abstract
We selected 145 reference organic molecules that include model fragments used in computer-aided drug design. We calculated 158 conformational energies and barriers using force fields, with wide applicability in commercial and free softwares and extensive application on the calculation of conformational energies of organic molecules, e.g. the UFF and DREIDING force fields, the Allinger's force fields MM3-96, MM3-00, MM4-8, the MM2-91 clones MMX and MM+, the MMFF94 force field, MM4, ab initio Hartree-Fock (HF) theory with different basis sets, the standard density functional theory B3LYP, the second-order post-HF MP2 theory and the Domain-based Local Pair Natural Orbital Coupled Cluster DLPNO-CCSD(T) theory, with the latter used for accurate reference values. The data set of the organic molecules includes hydrocarbons, haloalkanes, conjugated compounds, and oxygen-, nitrogen-, phosphorus- and sulphur-containing compounds. We reviewed in detail the conformational aspects of these model organic molecules providing the current understanding of the steric and electronic factors that determine the stability of low energy conformers and the literature including previous experimental observations and calculated findings. While progress on the computer hardware allows the calculations of thousands of conformations for later use in drug design projects, this study is an update from previous classical studies that used, as reference values, experimental ones using a variety of methods and different environments. The lowest mean error against the DLPNO-CCSD(T) reference was calculated for MP2 (0.35 kcal mol-1), followed by B3LYP (0.69 kcal mol-1) and the HF theories (0.81-1.0 kcal mol-1). As regards the force fields, the lowest errors were observed for the Allinger's force fields MM3-00 (1.28 kcal mol-1), ΜΜ3-96 (1.40 kcal mol-1) and the Halgren's MMFF94 force field (1.30 kcal mol-1) and then for the MM2-91 clones MMX (1.77 kcal mol-1) and MM+ (2.01 kcal mol-1) and MM4 (2.05 kcal mol-1). The DREIDING (3.63 kcal mol-1) and UFF (3.77 kcal mol-1) force fields have the lowest performance. These model organic molecules we used are often present as fragments in drug-like molecules. The values calculated using DLPNO-CCSD(T) make up a valuable data set for further comparisons and for improved force field parameterization.
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Affiliation(s)
- Ioannis Stylianakis
- Department of Medicinal Chemistry, Faculty of Pharmacy, National and Kapodistrian University of Athens, Panepistimioupolis Zografou, 15771, Athens, Greece
| | - Nikolaos Zervos
- Department of Medicinal Chemistry, Faculty of Pharmacy, National and Kapodistrian University of Athens, Panepistimioupolis Zografou, 15771, Athens, Greece
| | - Jenn-Huei Lii
- Department of Chemistry, National Changhua University of Education, Changhua City, Taiwan
| | - Dimitrios A Pantazis
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
| | - Antonios Kolocouris
- Department of Medicinal Chemistry, Faculty of Pharmacy, National and Kapodistrian University of Athens, Panepistimioupolis Zografou, 15771, Athens, Greece.
- Laboratory of Medicinal Chemistry, Section of Pharmaceutical Chemistry, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis-Zografou, 15771, Athens, Greece.
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10
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Radoń M. Benchmarks for transition metal spin-state energetics: why and how to employ experimental reference data? Phys Chem Chem Phys 2023; 25:30800-30820. [PMID: 37938035 DOI: 10.1039/d3cp03537a] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
Accurate prediction of energy differences between alternative spin states of transition metal complexes is essential in computational (bio)inorganic chemistry-for example, in characterization of spin crossover materials and in the theoretical modeling of open-shell reaction mechanisms-but it remains one of the most compelling problems for quantum chemistry methods. A part of this challenge is to obtain reliable reference data for benchmark studies, as even the highest-level applicable methods are known to give divergent results. This Perspective discusses two possible approaches to method benchmarking for spin-state energetics: using either theoretically computed or experiment-derived reference data. With the focus on the latter approach, an extensive general review is provided for the available experimental data of spin-state energetics and their interpretations in the context of benchmark studies, targeting the possibility of back-correcting the vibrational effects and the influence of solvents or crystalline environments. With a growing amount of experience, these effects can be now not only qualitatively understood, but also quantitatively modeled, providing the way to derive nearly chemically accurate estimates of the electronic spin-state gaps to be used as benchmarks and advancing our understanding of the phenomena related to spin states in condensed phases.
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Affiliation(s)
- Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Krakow, Poland.
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11
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Chamkin AA, Chamkina ES. A larger basis set describes atomization energy core-valence correction better than a higher-order coupled-cluster method. Phys Chem Chem Phys 2023; 25:27438-27447. [PMID: 37795799 DOI: 10.1039/d3cp03893a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
The accuracy of coupled-cluster methods for the computation of core-valence correction to atomization energy was assessed. Truncation levels up to CCSDTQP were considered together with (aug-)cc-pwCVnZ (n = D, T, Q, 5) basis sets and three different extrapolation techniques (canonical and flexible Helgaker formula and Riemann zeta function extrapolation). With the exception of CCSD, a more accurate correction can be obtained from a larger basis set using a lower-level coupled-cluster method, and not vice versa. For the CCSD(T) level, it also implies faster computations with modern codes. We also discussed the importance of moving to higher-order or all-electron methods for geometry optimizations. The present study provides the general knowledge needed for the most accurate state-of-the-art computations.
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Affiliation(s)
- Aleksandr A Chamkin
- A.N.Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences Russia, Vavilova St. 28, bld. 1, INEOS, 119334, Moscow, Russian Federation.
| | - Elena S Chamkina
- A.N.Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences Russia, Vavilova St. 28, bld. 1, INEOS, 119334, Moscow, Russian Federation.
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12
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Altun A, Riplinger C, Neese F, Bistoni G. Exploring the Accuracy Limits of PNO-Based Local Coupled-Cluster Calculations for Transition-Metal Complexes. J Chem Theory Comput 2023; 19:2039-2047. [PMID: 36917767 PMCID: PMC10100528 DOI: 10.1021/acs.jctc.3c00087] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
Abstract
While the domain-based local pair natural orbital coupled-cluster method with singles, doubles, and perturbative triples (DLPNO-CCSD(T)) has proven instrumental for computing energies and properties of large and complex systems accurately, calculations on first-row transition metals with a complex electronic structure remain challenging. In this work, we identify and address the two main error sources that influence the DLPNO-CCSD(T) accuracy in this context, namely, (i) correlation effects from the 3s and 3p semicore orbitals and (ii) dynamic correlation-induced orbital relaxation (DCIOR) effects that are not described by the local MP2 guess. We present a computational strategy that allows us to completely eliminate the DLPNO error associated with semicore correlation effects, while increasing, at the same time, the efficiency of the method. As regards the DCIOR effects, we introduce a diagnostic for estimating the deviation between DLPNO-CCSD(T) and canonical CCSD(T) for systems with significant orbital relaxation.
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Affiliation(s)
- Ahmet Altun
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | | | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Giovanni Bistoni
- Department of Chemistry, Biology, and Biotechnology, University of Perugia, 06123 Perugia, Italy
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Malloum A, Conradie J. Solvation of Manganese(III) Ion in Water and in Ammonia. J Phys Chem A 2023; 127:1103-1111. [PMID: 36716408 DOI: 10.1021/acs.jpca.2c05913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
In this work, we have studied the solvation of manganese(III) ion in water and in ammonia using three levels of theory: MP2, MN15, and ωB97XD associated with the aug-cc-pVDZ basis set. The studied systems are constituted of Mn3+(H2O)6 and Mn3+(NH3)6 in gas and solvent phases as well as Mn3+(H2O)18 and Mn3+(NH3)18 in the gas phase. Four aspects of the solvation of manganese(III) ion have been examined for the aforementioned systems at the three levels of theory. First, we started by locating the Jahn-Teller elongated and compressed configuration in Mn3+(H2O)6 and Mn3+(NH3)6. Second, we calculated the spin state energies and the spin state free energies for temperatures ranging from 50 to 400 K to look at possible spin crossover in the studied systems. Third, we carried out a quantum theory of atoms in molecules (QTAIM) analysis, and we determined the ionic radii of manganese(III) ion in water and in ammonia. Fourth, we calculated the solvation free energies and the solvation enthalpies of manganese(III) ion in water and in ammonia using the cluster continuum solvation model. For these four aspects of the solvation of manganese(III) ion, most of the reported properties are provided in this work for the first time. We particularly found that the calculated solvation enthalpy of the manganese(III) ion in water is in good agreement with an experimental estimate.
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Affiliation(s)
- Alhadji Malloum
- Department of Chemistry, University of the Free State, Bloemfontein9300, South Africa.,Department of Physics, Faculty of Science, University of Maroua, Maroua, Cameroon
| | - Jeanet Conradie
- Department of Chemistry, University of the Free State, Bloemfontein9300, South Africa.,Department of Chemistry, UiT - The Arctic University of Norway, N-9037Tromsø, Norway
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Aðalsteinsson HM, Bjornsson R. Ionization energies of metallocenes: a coupled cluster study of cobaltocene. Phys Chem Chem Phys 2023; 25:4570-4587. [PMID: 36723003 DOI: 10.1039/d2cp04715b] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Open-shell transition metal chemistry presents challenges to contemporary electronic structure methods, based on either density functional or wavefunction theory. While CCSD(T) is the well-trusted gold standard for maingroup thermochemistry, the accuracy and robustness of the method is less clear for open-shell transition metal chemistry, requiring benchmarking of CCSD(T)-based protocols against either higher-level theory or experiment. Ionization energies (IEs) of metallocenes provide an interesting test case with metallocenes being common redox reagents as well as playing roles as redox mediators and cocatalysts in redox catalysis. Using highly accurate ZEKE-MATI experimental measurements of gas phase adiabatic (5.3275 ± 0.0006 eV) and vertical (5.4424 ± 0.0006 eV) ionization energies of cobaltocene, we systematically assessed the accuracy of the local coupled-cluster method DLPNO-CCSD(T) with respect to geometry, reference determinant, basis set size and extrapolation schemes, PNO cut-off and extrapolation, local triples approximation, relativistic effects and core-valence correlation. We show that PNO errors are controllable via the recently introduced PNO extrapolation schemes and that the expensive iterative triples (T1) contribution can be made more manageable by calculating it as a smaller-basis/smaller PNO-cutoff correction. The reference determinant turns out to be a critical aspect in these calculations with the HF determinant resulting in large DLPNO-CCSD(T) errors, likely due to the qualitatively flawed molecular orbital spectrum. The BP86 functional on the other hand was found to provide reference orbitals giving small DLPNO-CCSD(T) errors, likely due to more realistic orbitals as suggested by the more consistent MO spectrum compared to HF. A protocol including complete basis set extrapolations with correlation-consistent basis sets, complete PNO space extrapolations, iterative triples- and core-valence correlation corrections was found to give errors of -0.07 eV and -0.03 eV for adiabatic- and vertical-IE of cobaltocene, respectively, giving close to chemical accuracy for both properties. A computationally efficient DLPNO-CCSD(T) protocol was devised and tested against adiabatic ionization energies of 6 different metallocenes (V, Cr, Mn, Fe, Co, Ni). For the other metallocenes, the iterative triples (T1) and PNO extrapolation contributions turn out to be even more important. The results give errors close to the experimental uncertainty, similar to recent auxiliary-field quantum Monte Carlo results. The quality of the reference determinant orbitals is identified as the main source of uncertainty in CCSD(T) calculations of metallocenes.
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Affiliation(s)
| | - Ragnar Bjornsson
- Science Institute, University of Iceland, 107 Reykjavik, Iceland.,Univ Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, 17 Rue des Martyrs, F-38054 Grenoble Cedex, France.
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15
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Pyykkönen A, Vaara J. Computational NMR of the iron pyrazolylborate complexes [Tp 2Fe] + and Tp 2Fe including solvation and spin-crossover effects. Phys Chem Chem Phys 2023; 25:3121-3135. [PMID: 36621831 DOI: 10.1039/d2cp03721a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Transition metal complexes have important roles in many biological processes as well as applications in fields such as pharmacy, chemistry and materials science. Paramagnetic nuclear magnetic resonance (pNMR) is a valuable tool in understanding such molecules, and theoretical computations are often advantageous or even necessary in the assignment of experimental pNMR signals. We have employed density functional theory (DFT) and the domain-based local pair natural orbital coupled-cluster method with single and double excitations (DLPNO-CCSD), as well as a number of model improvements, to determine the critical hyperfine part of the chemical shifts of the iron pyrazolylborate complexes [Tp2Fe]+ and Tp2Fe using a modern version of the Kurland-McGarvey theory, which is based on parameterising the hyperfine, electronic Zeeman and zero-field splitting interactions via the parameters of the electron paramagnetic resonance Hamiltonian. In the doublet [Tp2Fe]+ system, the calculations suggest a re-assignment of the 13C signal shifts. Consideration of solvent via the conductor-like polarisable continuum model (C-PCM) versus explicit solvent molecules reveals C-PCM alone to be insufficient in capturing the most important solvation effects. Tp2Fe exhibits a spin-crossover effect between a high-spin quintet (S = 2) and a low-spin singlet (S = 0) state, and its recorded temperature dependence can only be reproduced theoretically by accounting for the thermal Boltzmann distribution of the open-shell excited state and the closed-shell ground-state occupations. In these two cases, DLPNO-CCSD is found, in calculating the hyperfine couplings, to be a viable alternative to DFT, the demonstrated shortcomings of which have been a significant issue in the development of computational pNMR.
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Affiliation(s)
- Ari Pyykkönen
- NMR Research Unit, University of Oulu, P.O. Box 3000, Oulu FIN-90014, Finland.
| | - Juha Vaara
- NMR Research Unit, University of Oulu, P.O. Box 3000, Oulu FIN-90014, Finland.
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Drosou M, Mitsopoulou CA, Pantazis DA. Reconciling Local Coupled Cluster with Multireference Approaches for Transition Metal Spin-State Energetics. J Chem Theory Comput 2022; 18:3538-3548. [PMID: 35582788 PMCID: PMC9202354 DOI: 10.1021/acs.jctc.2c00265] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
![]()
Spin-state energetics
of transition metal complexes remain one
of the most challenging targets for electronic structure methods.
Among single-reference wave function approaches, local correlation
approximations to coupled cluster theory, most notably the domain-based
local pair natural orbital (DLPNO) approach, hold the promise of bringing
the accuracy of coupled cluster theory with single, double, and perturbative
triple excitations, CCSD(T), to molecular systems of realistic size
with acceptable computational cost. However, recent studies on spin-state
energetics of iron-containing systems raised doubts about the ability
of the DLPNO approach to adequately and systematically approximate
energetics obtained by the reference-quality complete active space
second-order perturbation theory with coupled-cluster semicore correlation,
CASPT2/CC. Here, we revisit this problem using a diverse set of iron
complexes and examine several aspects of the application of the DLPNO
approach. We show that DLPNO-CCSD(T) can accurately reproduce both
CASPT2/CC and canonical CCSD(T) results if two basic principles are
followed. These include the consistent use of the improved iterative
(T1) versus the semicanonical perturbative triple corrections
and, most importantly, a simple two-point extrapolation to the PNO
space limit. The latter practically eliminates errors arising from
the default truncation of electron-pair correlation spaces and should
be viewed as standard practice in applications of the method to transition
metal spin-state energetics. Our results show that reference-quality
results can be readily achieved with DLPNO-CCSD(T) if these principles
are followed. This is important also in view of the applicability
of the method to larger single-reference systems and multinuclear
clusters, whose treatment of dynamic correlation would be challenging
for multireference-based approaches.
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Affiliation(s)
- Maria Drosou
- Inorganic Chemistry Laboratory, National and Kapodistrian University of Athens, Panepistimiopolis, Zografou 15771, Greece
| | - Christiana A Mitsopoulou
- Inorganic Chemistry Laboratory, National and Kapodistrian University of Athens, Panepistimiopolis, Zografou 15771, Greece
| | - Dimitrios A Pantazis
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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Affiliation(s)
- Milica Feldt
- Leibniz Institute for Catalysis: Leibniz-Institut fur Katalyse eV Theory & Catalysis Albert-Einstein-Str 29A 18059 Rostock GERMANY
| | - Quan Manh Phung
- Nagoya University: Nagoya Daigaku Department of Chemistry JAPAN
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18
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Altun A, Ghosh S, Riplinger C, Neese F, Bistoni G. Addressing the System-Size Dependence of the Local Approximation Error in Coupled-Cluster Calculations. J Phys Chem A 2021; 125:9932-9939. [PMID: 34730360 PMCID: PMC8607505 DOI: 10.1021/acs.jpca.1c09106] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Over the last two decades, the local approximation has been successfully used to extend the range of applicability of the "gold standard" singles and doubles coupled-cluster method with perturbative triples CCSD(T) to systems with hundreds of atoms. The local approximation error grows in absolute value with the increasing system size, i.e., by increasing the number of electron pairs in the system. In this study, we demonstrate that the recently introduced two-point extrapolation scheme for approaching the complete pair natural orbital (PNOs) space limit in domain-based pair natural orbital CCSD(T) calculations drastically reduces the dependence of the error on the system size, thus opening up unprecedented opportunities for the calculation of benchmark quality relative energies for large systems.
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Affiliation(s)
- Ahmet Altun
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Soumen Ghosh
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | | | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Giovanni Bistoni
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
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