Dynamic variations of microbial community structure in Myriophyllum aquaticum constructed wetlands in response to different NH4+-N concentrations

Uncovering anaerobic oxidation of methane and active microorganisms in landfills by using stable isotope probing

Anaerobic oxidation of methane (AOM) coupled electron acceptor reduction has been shown to regulate methane (CH4) emissions from the habitats. Landfill is one of the most important anthropogenic CH4 emission sources. However, the effect of electron acceptors on the AOM process and its microbial mechanism in landfills is poorly characterized. Herein, electron acceptors including nitrate, nitrite, sulfate and ferric iron were used to regulate the AOM process in landfill microcosms by using stable isotope probing analysis. The addition of electron acceptors could promote AOM in the landfilled waste. Among them, nitrate and nitrite had the strongest promoting effect on AOM in the waste with the maximum activities of 5.60-5.76 μg g-1 d-1, which increased by 1070.9%-1103.6% compared with the control without electron acceptor amendation. Candidatus Methylomirabilis was only detected in assimilating CH4 in the ferric iron-amended treatment. The proteobacterial methanotrophs and Methylacidiphilum were mainly observed in the ferric iron 13C-DNA, likely due to O2 released from the conversion of nitric oxide. Methanomassiliicoccus were the most abundant archaea in the treatments with nitrate, nitrite and sulfate, while Methanosarcina dominated in the ferric iron-amended treatment. Nitrate, nitrite, sulfate and ferric iron all could prompt the growth of sulfur, iron, nitrate and nitrite metabolizing microorganisms. Partial least squares path modeling indicated that AOM in the landfilled waste could be driven by electron acceptors via the changes of environmental variables, while the direct effect of electron acceptors on the AOM activity was weak with an intensity of 0.06. Taken together, this study demonstrated that the AOM process in landfills can be regulated by electron acceptors, especially nitrate and nitrite, to mitigate CH4 emissions from landfills.

The combination of metagenomics and metabolomics reveals the effect of nitrogen fertilizer application driving the remobilization of immobilization remediation cadmium and rhizosphere microbial succession in rice

The remobilization of cadmium (Cd) in contaminated farmland soil due to nitrogen fertilizer addition has raised significant concerns regarding the effectiveness of immobilization remediation. This study investigated the effects of ammonia nitrogen (NH4+-N) and nitrogen (NO3--N) application (100 kg/ha) on the remobilization of immobilization of remediation Cd (bound to clay palygorskite) during various growth stages of rice through field experiments. Our findings revealed that increased organic acid secretion (e.g., benzoic acid and malic acid) from rice roots, induced by NH4+-N, significantly enhanced the NH4NO3-extractable Cd content. Consequently, the concentration of Cd in brown rice varied from 39.84 to 43.25 μg/kg to 78.31-90.44 μg/kg. While NO3--N exhibited a relatively weaker capacity for Cd remobilization (Cd content in brown rices: 50.17-65.23 μg/kg). Meanwhile, the organic acid secretion in roots inhibited the expression of most functional genes (e.g., nifK and napA), leading to shifts in microbial communities and functional metabolism (e.g., Cd2+ exporting). According to the results of metagenome-assembled genome (MAG) composition, specific MAGs with fewer functional annotations were enriched under NH4+-N treatment, may further increased risk of Cd exposure in rice by stimulating amt expression. Interaction analysis of metabolic products and microbial communities indicated acids linked to branched-chain amino acid (BCAA) metabolism and urea cycle might serve as a potentially key process influencing microbial dynamics.

Heavy metals removal from industrial wastewater of Biskra (Algeria) by Arundo donax and Phragmites australis

Industrial effluents pose a serious environmental problem, because they contain toxic contaminants mainly heavy metals that are the most dangerous to humans, animals, plants, and the environment in general. Phytoremediation using macrophytes is an adopted technique for the environment decontamination due to its efficiency and cost-effectiveness. The present study aims to highlight the capabilities of macrophytes to remove heavy metals from wastewater of Biskra region (Algeria). The methodology consists of filling out the filters planted with Arundo donax and Phragmites australis with raw industrial wastewater, then recovering decontaminated water after 15 days to assess removal of lead, copper, zinc, and iron. Both plants had shown a good efficiency for the removal of metals loaded in wastewater eliminating about 94 to 98% of initial concentration. In addition, calculated bioaccumulation factor (BAF) had confirmed the accumulation of heavy metals in different parts of experimental plants; recorded values of BAF > 1 allowed the consideration of Arundo donax and Phragmites australis as good hyper-accumulator plants. Obtained results confirm the efficiency of phytoremediation technology using macrophytes for the wastewater treatment in particular and the environment decontamination in general.

Molecular and microbial insights towards anaerobic biodegradation of anionic polyacrylamide in oil sands tailings

Anionic polyacrylamide (A-PAM) is widely used as a flocculant in the management of oil sands tailings. Nevertheless, apprehensions arise regarding its potential biodegradation and environmental consequences within the context of oil sands tailings. Consequently, it is imperative to delve into the anaerobic biodegradation of A-PAM in oil sands tailings to gain a comprehensive understanding of its influence on tailings water quality. This work explored the dynamics of A-PAM biodegradation across concentrations: 50, 100, 250, 500, 1000, and 2000 mg/kg TS. The results showed a significant decrease in A-PAM concentration and molecular weight at lower concentrations (50 and 100 mg/kg TS) compared to higher ones, suggesting enhanced degradation efficiency. Likewise, the organic transformation and methane production exhibited dependency on A-PAM concentrations. The peak concentrations observed were 20.0 mg/L for volatile fatty acids (VFAs), 0.07 mg/L for acrylamide (AMD), and 8.9 mL for methane yield, with these maxima being recorded at 50 mg/kg TS. The biodegradation efficiency diminishes at higher concentrations of A-PAM, potentially due to the inhibitory effects of polyacrylic acid accumulation. A-PAM biodegradation under anaerobic condition did not contribute to acute toxicity or genotoxicity. SEM-EDS, FT-IR and XRD analyses further revealed that higher concentrations of A-PAM inhibited the biodegradation by altering floc structure and composition, thereby restricting the microbial activity. Major microorganisms, including Smithella, Candidatus_Cloacimonas, W5, XBB1006, and DMER64 were identified, highlighting A-PAM's dual role as a source of carbon and nitrogen under anaerobic conditions. The above findings from this research not only significantly advance understanding of A-PAM's environmental behavior but also contribute to the effective management practices in oil sands tailings.

The potential of ferrihydrite-synthetic humic-like acid composite as a soil amendment for metal-contaminated agricultural soil: Immobilization mechanisms by combining abiotic and biotic perspectives

In-situ passivation technique has attracted increasing attention for metal-contaminated agricultural soil remediation. However, metal immobilization mechanisms are mostly illustrated based on metal speciation changes and alterations in soil physicochemical properties from a macroscopic and abiotic perspective. In this study, a ferrihydrite-synthetic humic-like acid composite (FH-SHLA) was fabricated and applied as a passivator for a 90-day soil incubation. The heavy metals immobilization mechanisms of FH-SHLA were investigated by combining both abiotic and biotic perspectives. Effects of FH-SHLA application on soil micro-ecology were also evaluated. The results showed that the 5%FH-SHLA treatment significantly decreased the DTPA-extractable Pb, Cd and Zn by 80.75%, 46.82% and 63.63% after 90 days of incubation (P < 0.05), respectively. Besides, 5% FH-SHLA addition significantly increased soil pH, soil organic matter content and cation exchange capacity (P < 0.05). The SEM, FTIR, and XPS characterizations revealed that the abiotic metal immobilization mechanisms by FH-SHLA included surface complexation, precipitation, electrostatic attraction, and cation-π interactions. For biotic perspective, in-situ microorganisms synergistically participated in the immobilization process via sulfide precipitation and Fe mineral production. FH-SHLA significantly altered the diversity and composition of the soil microbial community, and enhanced the intensity and complexity of the microbial co-occurrence network. Both metal bioavailability and soil physiochemical parameters played a vital role in shaping microbial communities, while the former contributed more. Overall, this study provides new insight into the heavy metal passivation mechanism and demonstrates that FH-SHLA is a promising and environmentally friendly amendment for metal-contaminated soil remediation.

Relationship between Nitrogen Dynamics and Key Microbial Nitrogen-Cycling Genes in an Intensive Freshwater Aquaculture Pond

Intensive aquaculture in high-density hybrid snakehead [Channa maculata (♀) × Channa argus (♂)] fishponds can lead to toxic conditions for fish. This study investigated nitrogen migration and transformation in these fishponds during different cultivation periods. Using qPCR technology, we analyzed the abundance variation of nitrogen-cycling microorganisms in water and sediment to reveal the nitrogen metabolism characteristics of hybrid snakehead fishponds. The results showed that fish biomass significantly impacts suspended particulate matter (SPM) flux. At the sediment-water interface, inorganic nitrogen fluxes showed predominant NO3--N absorption by sediments and NH4+-N and NO2--N release, especially in later cultivation stages. Sediments were rich in nirS and AMX 16S rRNA genes (ranging from 4.04 × 109 to 1.01 × 1010 and 1.19 × 108 to 2.62 × 108 copies/g, respectively) with nirS-type denitrifiers potentially dominating the denitrification process. Ammonia-oxidizing bacteria (AOB) were found to dominate the ammonia oxidation process over ammonia-oxidizing archaea (AOA) in both water and sediment. Redundancy analysis revealed a positive correlation between SPM flux, Chlorophyll a (Chl-a), and denitrification genes in the water, and between nitrogen-cycling genes and NH4+/NO2- fluxes at the interface. These findings provide a scientific basis for nitrogen control in hybrid snakehead fishponds.

High Ammonium Addition Changes the Diversity and Structure of Bacterial Communities in Temperate Wetland Soils of Northeastern China

The soil microbiome is an important component of wetland ecosystems and plays a pivotal role in nutrient cycling and climate regulation. Nitrogen (N) addition influences the soil's microbial diversity, composition, and function by affecting the soil's nutrient status. The change in soil bacterial diversity and composition in temperate wetland ecosystems in response to high ammonium nitrogen additions remains unclear. In this study, we used high-throughput sequencing technology to study the changes of soil bacterial diversity and community structure with increasing ammonium concentrations [CK (control, 0 kg ha-1 a-1), LN (low nitrogen addition, 40 kg ha-1 a-1), and HN (high nitrogen addition, 80 kg ha-1 a-1)] at a field experimental site in the Sanjiang Plain wetland, China. Our results showed that except for soil organic carbon (SOC), other soil physicochemical parameters, i.e., soil moisture content (SMC), dissolved organic nitrogen (DON), total nitrogen (TN), pH, ammonium nitrogen (NH4+), and dissolved organic carbon (DOC), changed significantly among three ammonium nitrogen addition concentrations (p < 0.05). Compared to CK, LN did not change soil bacterial α-diversity (p > 0.05), and HN only decreased the Shannon (p < 0.05) and did not change the Chao (p > 0.05) indices of soil bacterial community. Ammonium nitrogen addition did not significantly affect the soil's bacterial community structure based on non-metric multidimensional scaling (NMDS) and PERMANOVA (ADONIS) analyses. Acidobacteriota (24.96-31.11%), Proteobacteria (16.82-26.78%), Chloroflexi (10.34-18.09%), Verrucomicrobiota (5.23-11.56%), and Actinobacteriota (5.63-8.75%) were the most abundant bacterial phyla in the soils. Nitrogen addition changed the complexity and stability of the bacterial network. SMC, NO3-, and pH were the main drivers of the bacterial community structure. These findings indicate that enhanced atmospheric nitrogen addition may have an impact on bacterial communities in soil, and this study will allow us to better understand the response of the soil microbiome in wetland ecosystems in the framework of increasing nitrogen deposition.

Microbial community structure analyses and cultivable denitrifier isolation of Myriophyllum aquaticum constructed wetland under low C/N ratio

With the rapid expansion of livestock production, the amount of livestock wastewater accumulated rapidly. Lack of biodegradable organic matter makes denitrification of livestock wastewater after anaerobic digestion more difficult. In this study, Myriophyllum aquaticum constructed wetlands (CWs) with efficient nitrogen removal performance were established under different carbon/nitrogen (C/N) ratios. Analysis of community composition reveals the change of M. aquaticum CWs in microbial community structure with C/N ratios. The proportion of Proteobacteria which is one of the dominant phyla among denitrifier communities increased significantly under low C/N ratio conditions. Besides, to obtain cultivable denitrifier that could be added into CWs in situ, 33 strains belonging to phylum Proteobacteria were isolated from efficient M. aquaticum CWs, while the best-performing denitrification strain M3-1 was identified as Bacillus velezensis JT3-1 (GenBank No. CP032506.1). Redundancy analysis and quadratic models showed that C/N ratio had significant effects on disposal of nitrate (NO₃^--N) and the strains isolated could perform well in denitrification when C/N ratio is relatively low. In addition, they have relatively wide ranges of carbon sources, temperature and a high NO₃^- removal rate of 9.12 mg/(L·hr) at elevated concentrations of 800 mg/L nitrate. Thus, strains isolated from M. aquaticum CWs with low C/N ratio have a practical application value in the treatment of nitrate-containing wastewater. These denitrifying bacteria could be added to CWs to enhance nitrogen removal efficiency of CWs for livestock wastewater with low C/N ratio in the future.

Evaluation of the ecological impacts of short- and long-chain perfluoroalkyl acids on constructed wetland systems: Perfluorobutyric acid and perfluorooctanoic acid

Perfluoroalkyl substances (PFASs) contamination of aquatic system has attracted widespread attention in recent years. From both plant and microbial perspectives, the ecological risk of CWs by comparing PFASs with different chain lengths have not been fully understood. In this study, the influences of perfluorobutyric acid (PFBA) and perfluorooctanoic acid (PFOA) as typical of short- and long-chains on the ecological effect of CWs have been specifically studied. The results showed that plants produced oxidative stress response and the activities of superoxide dismutase (SOD) and peroxidase (POD) in leaves were stimulated by 17.23-28.13% and 10.49-14.17% upon 10 mg/L PFBA and PFOA exposure. Under the high level of PFBA and PFOA stress, the chlorophyll content was reduced by 15.20-39.40% and lipid peroxidation was observed in leaves with the accumulation of malondialdehyde (MDA) at 1.20-1.22 times of the control. Dehydrogenase (DHA) exhibited the most sensitivity in the presence of PFBA and PFOA with an inhibition ratio of over 90%. The biotoxicity of PFOA was higher than that of PFBA in terms of the inhibition degree of several substrate enzymes. The information of Illumina Miseq sequencing indicated that the diversity and structure of microbial community in CWs were significantly altered by PFBA and PFOA addition and led to an enrichment of more PFASs-tolerant bacteria.

Bioretention system mediated by different dry-wet alterations on nitrogen removal: Performance, fate, and microbial community

In laboratory experiments, the nitrogen migration and transformation in the stormwater bioretention system under different dry-wet alterations were studied. The removal efficiency showed that nitrogen could be removed efficiently in bioretention system under all dry-wet alterations, and the shorter antecedent dry days (ADDs) (1-5 days) were beneficial to the removal of nitrogen before plants decay, compared to the longer ADDs (7-22 days). Using a new method combined with Hydrus-1D model, water transport was simulated and nitrogen migration in bioretention system was quantified, indicating that NH₄⁺-N was mainly removed in the planting layer, and the removal of NO₃^--N was occurred in the submerged layer. Fate experiment showed the main fate of the nitrogen was microorganisms (1-5 ADDs) and soil immobilization (7-22 ADDs). Microbial analysis showed that shorter ADDs (1-5 days) were suitable for Firmicutes growth, while Proteobacteria and Actinobacteria accounted for greater abundance under longer ADDs (7-22 days). Canonical correlation analysis (CCA) revealed the relationships between microbial community and environmental factors. Soil moisture content, soil organic matter (SOM), TN (water), root length, and NO₃^--N (water) were significantly correlated with bacterial community. This work may give new insights into nitrogen migration and transformation, and can provide a reference for the further mechanism study and construction of stormwater bioretention systems.

Corpse decomposition increases the diversity and abundance of antibiotic resistance genes in different soil types in a fish model

As a common natural phenomenon, corpse decomposition may lead to serious environmental pollution such as nitrogen pollution. However, less is known about antibiotic resistance genes (ARGs), an emerging contaminant, during corpse degradation. Here, ARGs and microbiome in three soil types (black, red and yellow soil) have been investigated between experimental and control groups based on next-generation sequencing and high-throughput quantitative PCR techniques. We found that the absolute abundance of total ARGs and mobile genetic elements (MGEs) in the experimental groups were respectively enriched 536.96 and 240.60 times in different soil types, and the number of ARGs in experimental groups was 7-25 more than that in control groups. For experimental groups, the distribution of ARGs was distinct in different soil types, but sulfonamide resistance genes were always enriched. Corpse decomposition was a primary determinant for ARGs profiles. Microbiome, NH₄⁺ concentrates and pH also significantly affected ARGs profiles. Nevertheless, soil types had few effects on ARGs. For soil microbiome, some genera were elevated in experimental groups such as the Ignatzschineria and Myroides. The alpha diversity is decreased in experimental groups and microbial community structures are different between treatments. Additionally, the Escherichia and Neisseria were potential pathogens elevated in experimental groups. Network analysis indicated that most of ARGs like sulfonamide and multidrug resistance genes presented strong positively correlations with NH₄⁺ concentrates and pH, and some genera like Ignatzschineria and Dysgonomonas were positively correlated with several ARGs such as aminoglycoside and sulfonamide resistance genes. Our study reveals a law of ARGs' enrichment markedly during corpse decomposing in different soil types, and these ARGs contaminant maintaining in environment may pose a potential threat to environmental safety and human health.

The fate and long-term toxic effects of NiO nanoparticles at environmental concentration in constructed wetland: Enzyme activity, microbial property, metabolic pathway and functional genes

Although the potential threats of metallic oxide nanoparticles (MNPs) to constructed wetland (CW) have been broadly reported, limited information is available regarding the long-term impact of nickel oxide nanoparticles (NiO NPs) on CWs at the environmentally relevant concentrations. Here, we comprehensively elucidated the responses in the treatment performance, enzyme activities, microbial properties, metabolic pathways and functional genes of CWs to chronic exposure of NiO NPs (0.1 and 1 mg/L) for 120 days, with a quantitative analysis on the fate and migration of NiO NPs within CWs. Nitrogen removal evidently declined under the long-term exposure to NiO NPs. Besides, NiO NPs induced a deterioration in phosphorus removal, but gradually restored over time. The activities of dehydrogenase (DHA), phosphatase (PST), urease (URE), ammonia oxygenase (AMO) and nitrate reductase (NAR) were inhibited to some extent under NiO NPs stress. Furthermore, NiO NPs exposure reduced bacterial diversity, shifted microbial composition and obviously inhibited the transcription of the ammonia oxidizing and denitrifying functional genes. The results of nickel mass balance indicated that the major removal mechanism of NiO NPs in CWs was through substrate adsorption and plants uptake. Thus, the ecological impacts of prolonged NiO NPs exposure at environmental concentrations should not be neglected.

Genomic studies on natural and engineered aquatic denitrifying eco-systems: A research update

Excess nitrogenous compounds in municipal or industrial wastewaters can stimulate growth of denitrifying bacteria, in return, to convert potentially hazardous nitrate to inorganic nitrogen gas. To explore the community structure, distributions and succession of functional strains, and their interactions with other microbial communities, contemporary studies were performed based on detailed genomic analysis. This mini-review updated contemporary genomic studies on denitrifying genes in natural and engineered aquatic systems, with the constructed wetlands being the demonstrative system for the latter. Prospects for the employment of genomic studies on denitrifying systems for process design, optimization and development of novel denitrifying processes were discussed.

Application of basalt fiber in vertical flow constructed wetland for different pollution loads wastewater: Performance, substrate enzyme activity and microorganism community

The cost-effective and environmentally friendly substrates are vital for the design of constructed wetlands (CWs). This study explored the incorporation of basalt fiber (BF) into CWs as substrates for enhancing purification performance and comparative investigated the advantage of enzyme activities and microbial community of basalt fiber constructed wetland (BF-CW) compared with conventional constructed wetland (C-CW). It was found that the addition of BF obviously improved removal efficiencies of nitrogen and phosphorus around 10 ~ 25%, especially under high pollutant loading. Further substrate enzyme activity analysis showed that the dehydrogenase (DHA), urease (UA) and phosphatase (PST) activities of BF-CW were higher than those of C-CW. Moreover, high-throughput sequencing analysis revealed that the abundance of key functional bacteria was higher in BF-CW than C-CW, and the community structure in BF-CW was more resistant to changes in pollutant loadings. These results indicated that BF could be used as a new alternative substrate in CWs technology.