1
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Haas DJ, Barbieri JDM, Dorneles EMS, Lage AP. Chemotactic behavior of Campylobacter fetus subspecies towards cervical mucus, bovine placenta and selected substances and ion. Anim Reprod 2021; 18:e20210008. [PMID: 34394754 PMCID: PMC8356073 DOI: 10.1590/1984-3143-ar2021-0008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Accepted: 06/25/2021] [Indexed: 12/05/2022] Open
Abstract
The chemotaxis of C. fetus subsp. venerealis and C. fetus subsp. fetus was determined in the presence of bovine cervical mucus and bovine placental extract. Some reported substances and ion in those materials, such amino acids, ferrous iron, hormones, sugars and organic acids were also investigated. Bovine cervical mucus, bovine placenta extracts and some substances and ion of these materials namely L–fucose, L– aspartate, L–glutamate, L–serine, ferrous iron, fumarate, pyruvate and succinate were chemoattractants. The chemottraction was significantly larger in higher concentrations of the tested substances and ion and significant differences among tested strains were also observed. Meso-erythritol and hormones bovine placental lactogen, 17β-estradiol, and progesterone did not elicit chemotactical response. In conclusion, this chemotactic behavior may guide the C. fetus navigation in the bovine host's genital tract and be an important cofactor of tissue tropism for this bacterium.
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Affiliation(s)
- Dionei Joaquim Haas
- Departamento de Medicina Veterinária Preventiva, Escola de Veterinária, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil
| | - Jonata de Melo Barbieri
- Departamento de Medicina Veterinária Preventiva, Escola de Veterinária, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil
| | | | - Andrey Pereira Lage
- Departamento de Medicina Veterinária Preventiva, Escola de Veterinária, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil
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2
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Sher AA, Jerome JP, Bell JA, Yu J, Kim HY, Barrick JE, Mansfield LS. Experimental Evolution of Campylobacter jejuni Leads to Loss of Motility, rpoN (σ54) Deletion and Genome Reduction. Front Microbiol 2020; 11:579989. [PMID: 33240235 PMCID: PMC7677240 DOI: 10.3389/fmicb.2020.579989] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 10/14/2020] [Indexed: 12/18/2022] Open
Abstract
Evolution experiments in the laboratory have focused heavily on model organisms, often to the exclusion of clinically relevant pathogens. The foodborne bacterial pathogen Campylobacter jejuni belongs to a genus whose genomes are small compared to those of its closest genomic relative, the free-living genus Sulfurospirillum, suggesting genome reduction during the course of evolution to host association. In an in vitro experiment, C. jejuni serially passaged in rich medium in the laboratory exhibited loss of flagellar motility-an essential function for host colonization. At early time points the motility defect was often reversible, but after 35 days of serial culture, motility was irreversibly lost in most cells in 5 independently evolved populations. Population re-sequencing revealed disruptive mutations to genes in the flagellar transcriptional cascade, rpoN (σ54)-therefore disrupting the expression of the genes σ54 regulates-coupled with deletion of rpoN in all evolved lines. Additional mutations were detected in virulence-related loci. In separate in vivo experiments, we demonstrate that a phase variable (reversible) motility mutant carrying an adenine deletion within a homopolymeric tract resulting in truncation of the flagellar biosynthesis gene fliR was deficient for colonization in a C57BL/6 IL-10-/- mouse disease model. Re-insertion of an adenine residue partially restored motility and ability to colonize mice. Thus, a pathogenic C. jejuni strain was rapidly attenuated by experimental laboratory evolution and demonstrated genomic instability during this evolutionary process. The changes observed suggest C. jejuni is able to evolve in a novel environment through genome reduction as well as transition, transversion, and slip-strand mutations.
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Affiliation(s)
- Azam A. Sher
- Comparative Enteric Diseases Laboratory, East Lansing, MI, United States
- Comparative Medicine and Integrative Biology, College of Veterinary Medicine, Michigan State University, East Lansing, MI, United States
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI, United States
| | - John P. Jerome
- Comparative Enteric Diseases Laboratory, East Lansing, MI, United States
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI, United States
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States
| | - Julia A. Bell
- Comparative Enteric Diseases Laboratory, East Lansing, MI, United States
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States
| | - Julian Yu
- Comparative Enteric Diseases Laboratory, East Lansing, MI, United States
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI, United States
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States
| | - Hahyung Y. Kim
- Comparative Enteric Diseases Laboratory, East Lansing, MI, United States
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States
| | - Jeffrey E. Barrick
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI, United States
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, United States
| | - Linda S. Mansfield
- Comparative Enteric Diseases Laboratory, East Lansing, MI, United States
- BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI, United States
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, United States
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3
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Pascoe B, Williams LK, Calland JK, Meric G, Hitchings MD, Dyer M, Ryder J, Shaw S, Lopes BS, Chintoan-Uta C, Allan E, Vidal A, Fearnley C, Everest P, Pachebat JA, Cogan TA, Stevens MP, Humphrey TJ, Wilkinson TS, Cody AJ, Colles FM, Jolley KA, Maiden MCJ, Strachan N, Pearson BM, Linton D, Wren BW, Parkhill J, Kelly DJ, van Vliet AHM, Forbes KJ, Sheppard SK. Domestication of Campylobacter jejuni NCTC 11168. Microb Genom 2019; 5. [PMID: 31310201 PMCID: PMC6700657 DOI: 10.1099/mgen.0.000279] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Reference and type strains of well-known bacteria have been a cornerstone of microbiology research for decades. The sharing of well-characterized isolates among laboratories has run in parallel with research efforts and enhanced the reproducibility of experiments, leading to a wealth of knowledge about trait variation in different species and the underlying genetics. Campylobacter jejuni strain NCTC 11168, deposited at the National Collection of Type Cultures in 1977, has been adopted widely as a reference strain by researchers worldwide and was the first Campylobacter for which the complete genome was published (in 2000). In this study, we collected 23 C. jejuni NCTC 11168 reference isolates from laboratories across the UK and compared variation in simple laboratory phenotypes with genetic variation in sequenced genomes. Putatively identical isolates, identified previously to have aberrant phenotypes, varied by up to 281 SNPs (in 15 genes) compared to the most recent reference strain. Isolates also display considerable phenotype variation in motility, morphology, growth at 37 °C, invasion of chicken and human cell lines, and susceptibility to ampicillin. This study provides evidence of ongoing evolutionary change among C. jejuni isolates as they are cultured in different laboratories and highlights the need for careful consideration of genetic variation within laboratory reference strains. This article contains data hosted by Microreact.
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Affiliation(s)
- Ben Pascoe
- MRC CLIMB Consortium, Bath, UK.,The Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK
| | - Lisa K Williams
- Swansea University Medical School, Swansea University, Singleton Park, Swansea, UK
| | - Jessica K Calland
- The Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK
| | - Guillaume Meric
- Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, 75 Commercial Rd, Melbourne 3004, Victoria, Australia.,Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia.,The Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK
| | - Matthew D Hitchings
- Swansea University Medical School, Swansea University, Singleton Park, Swansea, UK
| | - Myles Dyer
- Swansea University Medical School, Swansea University, Singleton Park, Swansea, UK
| | - Joseph Ryder
- The Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK
| | | | | | | | - Elaine Allan
- UCL Eastman Dental Institute, University College of London, London, UK
| | - Ana Vidal
- Animal and Plant Health Agency, Weybridge, Surrey, UK.,Present address: Antimicrobial Resistance Policy and Surveillance Team, Veterinary Medicines Directorate, Department for Environment, Food and Rural Affairs (Defra), Surrey, UK
| | | | | | | | - Tristan A Cogan
- School of Clinical Veterinary Science, Langford, Bristol, UK
| | | | - Thomas J Humphrey
- Swansea University Medical School, Swansea University, Singleton Park, Swansea, UK
| | - Thomas S Wilkinson
- Swansea University Medical School, Swansea University, Singleton Park, Swansea, UK
| | - Alison J Cody
- Department of Zoology, University of Oxford, Oxford, UK
| | | | | | - Martin C J Maiden
- Department of Zoology, University of Oxford, Oxford, UK.,NIHR Health Protections Research Unit in Gastrointestinal Infections, University of Oxford, Oxford, UK
| | | | | | | | - Brendan W Wren
- Quadram Institute Bioscience, Norwich, UK.,London School of Hygiene and Tropical Medicine, London, UK
| | - Julian Parkhill
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK
| | - David J Kelly
- Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, UK
| | | | | | - Samuel K Sheppard
- Swansea University Medical School, Swansea University, Singleton Park, Swansea, UK.,The Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK.,MRC CLIMB Consortium, Bath, UK.,Department of Zoology, University of Oxford, Oxford, UK
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4
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Aidley J, Wanford JJ, Green LR, Sheppard SK, Bayliss CD. PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter. Microb Genom 2018; 4. [PMID: 30351264 PMCID: PMC6321876 DOI: 10.1099/mgen.0.000228] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Hypermutable simple sequence repeats (SSRs) are drivers of phase variation (PV) whose stochastic, high-frequency, reversible switches in gene expression are a common feature of several pathogenic bacterial species, including the human pathogen Campylobacter jejuni. Here we examine the distribution and conservation of known and putative SSR-driven phase variable genes – the phasome – in the genus Campylobacter. PhasomeIt, a new program, was specifically designed for rapid identification of SSR-mediated PV. This program detects the location, type and repeat number of every SSR. Each SSR is linked to a specific gene and its putative expression state. Other outputs include conservation of SSR-driven phase-variable genes and the ‘core phasome’ – the minimal set of PV genes in a phylogenetic grouping. Analysis of 77 complete Campylobacter genome sequences detected a ‘core phasome’ of conserved PV genes in each species and a large number of rare PV genes with few, or no, homologues in other genome sequences. Analysis of a set of partial genome sequences, with food-chain-associated metadata, detected evidence of a weak link between phasome and source host for disease-causing isolates of sequence type (ST)-828 but not the ST-21 or ST-45 complexes. Investigation of the phasomes in the genus Campylobacter provided evidence of overlapping but distinctive mechanisms of PV-mediated adaptation to specific niches. This suggests that the phasome could be involved in host adaptation and spread of campylobacters. Finally, this tool is malleable and will have utility for studying the distribution and genic effects of other repetitive elements in diverse bacterial species.
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Affiliation(s)
- Jack Aidley
- 1Department of Genetics and Genome Biology, University of Leicester, Leicester, UK
| | - Joseph J Wanford
- 1Department of Genetics and Genome Biology, University of Leicester, Leicester, UK
| | - Luke R Green
- 1Department of Genetics and Genome Biology, University of Leicester, Leicester, UK
| | - Samuel K Sheppard
- 2Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, UK
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5
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Frirdich E, Biboy J, Huynh S, Parker CT, Vollmer W, Gaynor EC. Morphology heterogeneity within a Campylobacter jejuni helical population: the use of calcofluor white to generate rod-shaped C. jejuni 81-176 clones and the genetic determinants responsible for differences in morphology within 11168 strains. Mol Microbiol 2017; 104:948-971. [PMID: 28316093 PMCID: PMC5530802 DOI: 10.1111/mmi.13672] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/14/2017] [Indexed: 12/11/2022]
Abstract
Campylobacter jejuni helical shape is important for colonization and host interactions with straight mutants having altered biological properties. Passage on calcofluor white (CFW) resulted in C. jejuni 81‐176 isolates with morphology changes: either a straight morphology from frameshift mutations and single nucleotide polymorphisms in peptidoglycan hydrolase genes pgp1 or pgp2 or a reduction in curvature due a frameshift mutation in cjj81176_1105, a putative peptidoglycan endopeptidase. Shape defects were restored by complementation. Whole genome sequencing of CFW‐passaged strains showed no specific changes correlating to CFW exposure. The cjj81176_1279 (recR; recombinational DNA repair) and cjj81176_1449 (unknown function) genes were highly variable in all 81‐176 strains sequenced. A frameshift mutation in pgp1 of our laboratory isolate of the straight genome sequenced variant of 11168 (11168‐GS) was also identified. The PG muropeptide profile of 11168‐GS was identical to that of Δpgp1 in the original minimally passaged 11168 strain (11168‐O). Introduction of wild type pgp1 into 11168‐GS did not restore helical morphology. The recR gene was also highly variable in 11168 strains. Microbial cell‐to‐cell heterogeneity is proposed as a mechanism of ensuring bacterial survival in sub‐optimal conditions. In certain environments, changes in C. jejuni morphology due to genetic heterogeneity may promote C. jejuni survival.
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Affiliation(s)
- Emilisa Frirdich
- Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z3
| | - Jacob Biboy
- Institute for Cell and Molecular Biosciences, The Centre for Bacterial Cell Biology, Newcastle University, Newcastle Upon Tyne, NE2 4AX, UK
| | - Steven Huynh
- Agricultural Research Service, U.S. Department of Agriculture, Produce Safety and Microbiology Research Unit, Albany, CA, 94710, USA
| | - Craig T Parker
- Agricultural Research Service, U.S. Department of Agriculture, Produce Safety and Microbiology Research Unit, Albany, CA, 94710, USA
| | - Waldemar Vollmer
- Institute for Cell and Molecular Biosciences, The Centre for Bacterial Cell Biology, Newcastle University, Newcastle Upon Tyne, NE2 4AX, UK
| | - Erin C Gaynor
- Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z3
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6
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Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors. PLoS One 2015. [PMID: 26207372 PMCID: PMC4514472 DOI: 10.1371/journal.pone.0133420] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Research on the obligate intracellular bacterium Chlamydia trachomatis demands culture in cell-lines, but the adaptive process behind the in vivo to in vitro transition is not understood. We assessed the genomic and transcriptomic dynamics underlying C. trachomatis in vitro adaptation of strains representing the three disease groups (ocular, epithelial-genital and lymphogranuloma venereum) propagated in epithelial cells over multiple passages. We found genetic features potentially underlying phase variation mechanisms mediating the regulation of a lipid A biosynthesis enzyme (CT533/LpxC), and the functionality of the cytotoxin (CT166) through an ON/OFF mechanism. We detected inactivating mutations in CT713/porB, a scenario suggesting metabolic adaptation to the available carbon source. CT135 was inactivated in a tropism-specific manner, with CT135-negative clones emerging for all epithelial-genital populations (but not for LGV and ocular populations) and rapidly increasing in frequency (~23% mutants per 10 passages). RNA-sequencing analyses revealed that a deletion event involving CT135 impacted the expression of multiple virulence factors, namely effectors known to play a role in the C. trachomatis host-cell invasion or subversion (e.g., CT456/Tarp, CT694, CT875/TepP and CT868/ChlaDub1). This reflects a scenario of attenuation of C. trachomatis virulence in vitro, which may take place independently or in a cumulative fashion with the also observed down-regulation of plasmid-related virulence factors. This issue may be relevant on behalf of the recent advances in Chlamydia mutagenesis and transformation where culture propagation for selecting mutants/transformants is mandatory. Finally, there was an increase in the growth rate for all strains, reflecting gradual fitness enhancement over time. In general, these data shed light on the adaptive process underlying the C. trachomatis in vivo to in vitro transition, and indicates that it would be prudent to restrict culture propagation to minimal passages and check the status of the CT135 genotype in order to avoid the selection of CT135-negative mutants, likely originating less virulent strains.
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7
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Pendleton S, D’Souza D, Joshi S, Hanning I. Current Perspectives on Campylobacter. Food Saf (Tokyo) 2015. [DOI: 10.1016/b978-0-12-800245-2.00011-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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8
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Scott NE, Marzook NB, Cain JA, Solis N, Thaysen-Andersen M, Djordjevic SP, Packer NH, Larsen MR, Cordwell SJ. Comparative Proteomics and Glycoproteomics Reveal Increased N-Linked Glycosylation and Relaxed Sequon Specificity in Campylobacter jejuni NCTC11168 O. J Proteome Res 2014; 13:5136-50. [DOI: 10.1021/pr5005554] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
| | | | | | | | - Morten Thaysen-Andersen
- Department
of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Steven P. Djordjevic
- i3
Institute, University of Technology Sydney, Ultimo, New South Wales 2007, Australia
| | - Nicolle H. Packer
- Department
of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Martin R. Larsen
- Protein
Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense 5000, Denmark
| | - Stuart J. Cordwell
- Discipline
of Pathology, School of Medical Sciences, The University of Sydney, Sydney, New South Wales 2006, Australia
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9
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Mohawk KL, Poly F, Sahl JW, Rasko DA, Guerry P. High frequency, spontaneous motA mutations in Campylobacter jejuni strain 81-176. PLoS One 2014; 9:e88043. [PMID: 24558375 PMCID: PMC3928116 DOI: 10.1371/journal.pone.0088043] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Accepted: 01/02/2014] [Indexed: 12/28/2022] Open
Abstract
Campylobacter jejuni is an important cause of bacterial diarrhea worldwide. The pathogenesis of C. jejuni is poorly understood and complicated by phase variation of multiple surface structures including lipooligosaccharide, capsule, and flagellum. When C. jejuni strain 81-176 was plated on blood agar for single colonies, the presence of translucent, non-motile colonial variants was noted among the majority of opaque, motile colonies. High-throughput genomic sequencing of two flagellated translucent and two opaque variants as well as the parent strain revealed multiple genetic changes compared to the published genome. However, the only mutated open reading frame common between the two translucent variants and absent from the opaque variants and the parent was motA, encoding a flagellar motor protein. A total of 18 spontaneous motA mutations were found that mapped to four distinct sites in the gene, with only one class of mutation present in a phase variable region. This study exemplifies the mutative/adaptive properties of C. jejuni and demonstrates additional variability in C. jejuni beyond phase variation.
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Affiliation(s)
- Krystle L. Mohawk
- Enteric Diseases Department, Naval Medical Research Center, Silver Spring, Maryland, United States of America
| | - Frédéric Poly
- Enteric Diseases Department, Naval Medical Research Center, Silver Spring, Maryland, United States of America
| | - Jason W. Sahl
- Institute for Genome Sciences, Department of Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, Maryland, United States of America
| | - David A. Rasko
- Institute for Genome Sciences, Department of Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, Maryland, United States of America
| | - Patricia Guerry
- Enteric Diseases Department, Naval Medical Research Center, Silver Spring, Maryland, United States of America
- * E-mail:
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10
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Thomas DK, Lone AG, Selinger LB, Taboada EN, Uwiera RRE, Abbott DW, Inglis GD. Comparative variation within the genome of Campylobacter jejuni NCTC 11168 in human and murine hosts. PLoS One 2014; 9:e88229. [PMID: 24516617 PMCID: PMC3917866 DOI: 10.1371/journal.pone.0088229] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2013] [Accepted: 01/03/2014] [Indexed: 11/18/2022] Open
Abstract
Campylobacteriosis incited by C. jejuni is a significant enteric disease of human beings. A person working with two reference strains of C. jejuni National Collection of Type Cultures (NCTC) 11168 developed symptoms of severe enteritis including bloody diarrhea. The worker was determined to be infected by C. jejuni. In excess of 50 isolates were recovered from the worker's stool. All of the recovered isolates and the two reference strains were indistinguishable from each other based on comparative genomic fingerprint subtyping. Whole genome sequence analysis indicated that the worker was infected with a C. jejuni NCTC 11168 obtained from the American Type Culture Collection; this strain (NCTC 11168-GSv) is the genome sequence reference. After passage through the human host, major genetic changes including indel mutations within twelve contingency loci conferring phase variations were detected in the genome of C. jejuni. Specific and robust single nucleotide polymorphism (SNP) changes in the human host were also observed in two loci (Cj0144c, Cj1564). In mice inoculated with an isolate of C. jejuni NCTC 11168-GSv from the infected person, the isolate underwent further genetic variation. At nine loci, mutations specific to inoculated mice including five SNP changes were observed. The two predominant SNPs observed in the human host reverted in mice. Genetic variations occurring in the genome of C. jejuni in mice corresponded to increased densities of C. jejuni cells associated with cecal mucosa. In conclusion, C. jejuni NCTC 11168-GSv was found to be highly virulent in a human being inciting severe enteritis. Host-specific mutations in the person with enteritis occurred/were selected for in the genome of C. jejuni, and many were not maintained in mice. Information obtained in the current study provides new information on host-specific genetic adaptation by C. jejuni.
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Affiliation(s)
- Dallas K Thomas
- Agriculture and Agri-Food Canada Research Centre, Lethbridge, Alberta, Canada
| | - Abdul G Lone
- Agriculture and Agri-Food Canada Research Centre, Lethbridge, Alberta, Canada ; Department of Biological Sciences, University of Lethbridge, Lethbridge, Alberta, Canada
| | - L Brent Selinger
- Department of Biological Sciences, University of Lethbridge, Lethbridge, Alberta, Canada
| | | | - Richard R E Uwiera
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada
| | - D Wade Abbott
- Agriculture and Agri-Food Canada Research Centre, Lethbridge, Alberta, Canada
| | - G Douglas Inglis
- Agriculture and Agri-Food Canada Research Centre, Lethbridge, Alberta, Canada
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11
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Butcher J, Stintzi A. The transcriptional landscape of Campylobacter jejuni under iron replete and iron limited growth conditions. PLoS One 2013; 8:e79475. [PMID: 24223952 PMCID: PMC3815106 DOI: 10.1371/journal.pone.0079475] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2013] [Accepted: 09/24/2013] [Indexed: 01/18/2023] Open
Abstract
The genome-wide Campylobacter jejuni transcriptional response under iron replete and iron limited conditions was characterized using RNA-seq. We have identified 111 novel C. jejuni 5’UTRs and mapped 377 co-transcribed genes into 230 transcriptional operons. In contrast to previous microarray results, the C. jejuni iron stimulon is less extensive than previously believed and consists of 77 iron activated genes and 50 iron repressed genes. As anticipated, the iron repressed genes are primarily those involved in iron acquisition or oxidative stress defense. Interestingly, these experiments have revealed that iron is an important modulator of flagellar biogenesis with almost all the components of the flagella found to be iron activated. Given that motility is a well-known C. jejuni colonization factor, this suggests that there is an important regulatory coupling of flagellar biogenesis and iron level in C. jejuni. In addition we have identified several consensus mutations in the C. jejuni NCTC11168 strain that are widespread in the Campylobacter research community and which may explain conflicting phenotypic reports for this strain. Comparative analysis of iron responsive genes with the known Fur regulon indicates that many iron responsive genes are not Fur responsive; suggesting that additional iron regulatory factors remain to be characterized in C. jejuni. Further analysis of the RNA-seq data identified multiple novel transcripts including 19 potential ncRNAs. The expression of selected ncRNAs was confirmed and quantified with qRT-PCR. The qRT-PCR results indicate that several of these novel transcripts are either Fur and/or iron responsive. The fact that several of these ncRNAs are iron responsive or Fur regulated suggests that they may perform regulatory roles in iron homeostasis.
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Affiliation(s)
- James Butcher
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Ontario, Canada
| | - Alain Stintzi
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Ontario, Canada
- * E-mail:
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12
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Revez J, Schott T, Llarena AK, Rossi M, Hänninen ML. Genetic heterogeneity of Campylobacter jejuni NCTC 11168 upon human infection. INFECTION GENETICS AND EVOLUTION 2013; 16:305-9. [PMID: 23523819 DOI: 10.1016/j.meegid.2013.03.009] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Revised: 02/28/2013] [Accepted: 03/05/2013] [Indexed: 01/28/2023]
Abstract
Campylobacter jejuni NCTC 11168 variants before and after accidental human infection were sequenced with Illumina technology and mapped against the isogenic reference genome applying the Breseq pipeline. Only the frequencies of length variations of homopolymeric tracts in the contingency genes Cj0045c, Cj0456c, Cj1139c, Cj1145c, and Cj1306c and a deletion in Cj0184c were significantly different after human passage (p<0.01). Our results highlight differences in the selection of C. jejuni variants after human infection compared with those observed in animal models, emphasizing the genetic diversity of C. jejuni NCTC 11168 and the possible role of the host in the selection of bacterial determinants that might be involved in the adaptation and disease development.
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Affiliation(s)
- Joana Revez
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland.
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