1
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Aguilar-Llanos E, Carrera-Pacheco SE, González-Pastor R, Zúñiga-Miranda J, Rodríguez-Pólit C, Mayorga-Ramos A, Carrillo-Naranjo O, Guamán LP, Romero-Benavides JC, Cevallos-Morillo C, Echeverría GA, Piro OE, Alcívar-León CD, Heredia-Moya J. Crystal Structure, Hirshfeld Surface Analysis, and Biological Activities of Schiff-Base Derivatives of 4-Aminoantipyrine. ACS OMEGA 2023; 8:42632-42646. [PMID: 38024734 PMCID: PMC10652364 DOI: 10.1021/acsomega.3c05372] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 09/26/2023] [Indexed: 12/01/2023]
Abstract
Eight Schiff bases, synthesized by the reaction of 4-aminoantipyrine with different cinnamaldehydes, were studied in the solid state by using vibrational spectroscopy (IR) and X-ray diffraction techniques. The analysis was extended to the solution phase through ultraviolet-vis, fluorescence spectroscopy, and cyclic voltammetry. Finally, the crystal structures of four compounds (3b, 3d, 3g, and 3h) were determined and studied. In addition to the experimental study, theoretical calculations using the semiempirical method PM6/ZDO were performed to understand better the compound's molecular properties, UV-vis, and infrared spectra. The primary difference is the angular conformation of the terminal phenyl rings around the corresponding linking C-N and C-C σ-bonds. Furthermore, as a result of extended bonding, the > C=N- azomethine group-containing Cpyr-N=(CH)-(CR)=(CH)-Cbz chain (with R=H for 3b, 3d, and 3h, and R=CH3 for 3g) is planar, nearly coplanar, with the mean plane of the pyrazole ring. Hirshfeld surface (HS) analysis was used to investigate the crystal packing and intermolecular interactions, which revealed that intermolecular C-H···O and C-H···N hydrogen bonds, π···π stacking, and C-H···π and C=O···π interactions stabilize the compounds. The energy contributions to the lattice energies of potential hydrogen bonds were primarily dispersive and repulsive. All derivatives were tested in vitro on LPS-stimulated mouse macrophages to assess their ability to suppress the LPS-induced inflammatory responses. Only a slight reduction in the level of NO production was found in activated macrophages treated with 3h. Additionally, the derivatives were tested for antimicrobial activity against several clinical bacteria and fungi strains, including three biofilm-forming microorganisms. Nevertheless, only Schiff base 3f showed interesting antibacterial activities with minimum inhibitory concentration (MIC) values as low as 15.6 μM against Enterobacter gergoviae. On the other hand, Schiff base 3f and, to a lesser extent, 3b and 3h showed antifungal activity against clinical isolates of Candida. The lowest MIC value was for 3f against Candida albicans (15.6 μM). It is interesting to note that the same Schiff bases exhibit the highest activity in both biological evaluations.
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Affiliation(s)
- Esteban Aguilar-Llanos
- Facultad
de Ciencias Químicas, Universidad
Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador
| | - Saskya E. Carrera-Pacheco
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Rebeca González-Pastor
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Johana Zúñiga-Miranda
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Cristina Rodríguez-Pólit
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Arianna Mayorga-Ramos
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Oscar Carrillo-Naranjo
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Linda P. Guamán
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Juan Carlos Romero-Benavides
- Departamento
de Química, Facultad de Ciencias Exactas y Naturales, Universidad Técnica Particular de Loja, Loja 1101608, Ecuador
| | - Carlos Cevallos-Morillo
- Facultad
de Ciencias Químicas, Universidad
Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador
| | - Gustavo A. Echeverría
- Departamento
de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata and Institute IFLP (CONICET, CCT-La
Plata), C. C. 67, La Plata 1900, Argentina
| | - Oscar E. Piro
- Departamento
de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata and Institute IFLP (CONICET, CCT-La
Plata), C. C. 67, La Plata 1900, Argentina
| | - Christian D. Alcívar-León
- Facultad
de Ciencias Químicas, Universidad
Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador
| | - Jorge Heredia-Moya
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
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2
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Alam M. Exploration of Binding Affinities of a 3β,6β-Diacetoxy-5α-cholestan-5-ol with Human Serum Albumin: Insights from Synthesis, Characterization, Crystal Structure, Antioxidant and Molecular Docking. Molecules 2023; 28:5942. [PMID: 37630192 PMCID: PMC10459092 DOI: 10.3390/molecules28165942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/03/2023] [Accepted: 08/04/2023] [Indexed: 08/27/2023] Open
Abstract
The present study describes the synthesis, characterization, and in vitro molecular interactions of a steroid 3β,6β-diacetoxy-5α-cholestan-5-ol. Through conventional and solid-state methods, a cholestane derivative was successfully synthesized, and a variety of analytical techniques were employed to confirm its identity, including high-resolution mass spectrometry (HRMS), Fourier transforms infrared (FT-IR), nuclear magnetic resonance (NMR), elemental analysis, and X-ray single-crystal diffraction. Optimizing the geometry of the steroid was undertaken using density functional theory (DFT), and the results showed great concordance with the data from the experiments. Fluorescence spectral methods and ultraviolet-vis absorption titration were employed to study the in vitro molecular interaction of the steroid regarding human serum albumin (HSA). The Stern-Volmer, modified Stern-Volmer, and thermodynamic parameters' findings showed that steroids had a significant binding affinity to HSA and were further investigated by molecular docking studies to understand the participation of active amino acids in forming non-bonding interactions with steroids. Fluorescence studies have shown that compound 3 interacts with human serum albumin (HSA) through a static quenching mechanism. The binding affinity of compound 3 for HSA was found to be 3.18 × 104 mol-1, and the Gibbs free energy change (ΔG) for the binding reaction was -9.86 kcal mol-1 at 298 K. This indicates that the binding of compound 3 to HSA is thermodynamically favorable. The thermodynamic parameters as well as the binding score obtained from molecular docking at various Sudlow's sites was -8.2, -8.5, and -8.6 kcal/mol for Sites I, II, and III, respectively, supporting the system's spontaneity. Aside from its structural properties, the steroid demonstrated noteworthy antioxidant activity, as evidenced by its IC50 value of 58.5 μM, which is comparable to that of ascorbic acid. The findings presented here contribute to a better understanding of the pharmacodynamics of steroids.
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Affiliation(s)
- Mahboob Alam
- Department of Safety Engineering, Dongguk University Wise, 123 Dongdae-ro, Gyeongju-si 780714, Gyeongbuk, Republic of Korea
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3
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Karthikeyan S, Grishina M, Kandasamy S, Mangaiyarkarasi R, Ramamoorthi A, Chinnathambi S, Pandian GN, John Kennedy L. A review on medicinally important heterocyclic compounds and importance of biophysical approach of underlying the insight mechanism in biological environment. J Biomol Struct Dyn 2023; 41:14599-14619. [PMID: 36914255 DOI: 10.1080/07391102.2023.2187640] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 02/12/2023] [Indexed: 03/16/2023]
Abstract
Heterocyclic derivatives have more interesting biological properties which hold a remarkable place in pharmaceutical industries due to their unique physiochemical properties and ease of adaption in various biological environments. Of many, the above-said derivatives have been recently examined for their promising action against a few malignancies. Specifically, anti-cancer research has benefited from these derivatives' natural flexibility and dynamic core scaffold. In any case, concerning some other promising anti-cancer drugs, heterocyclic derivative doesn't come without deficiencies. To be a successful drug candidate it should poses Absorption, Distribution, Metabolism and Eliminations (ADME) parameter, and must also have good binding interaction towards carrier protein as well as DNA and less in toxic nature, economically feasible. In this review, we described the overview of biologically important heterocyclic derivatives and their main application in medicine. Further, we focus types of biophysical techniques to understand the binding interaction mechanism.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Subramani Karthikeyan
- Division of Physics, School of Advanced Sciences, Vellore Institute of Technology University, Chennai, India
- Centre for Healthcare Advancement, Innovation and Research, Vellore Institute of Technology University, Chennai, India
| | - Maria Grishina
- Laboratory of Computational Modelling of Drugs, South Ural State University, Chelyabinsk, Russia
| | | | | | - Anitha Ramamoorthi
- Department of Chemistry, Velammal Intitute of Technology, Velammal Knowledge Park, Panchetti, India
| | - Shanmugavel Chinnathambi
- Institute for Integrated Cell-Material Sciences, Institute for Advanced Study, Kyoto University, Kyoto, Japan
| | - Ganesh N Pandian
- Institute for Integrated Cell-Material Sciences, Institute for Advanced Study, Kyoto University, Kyoto, Japan
- Department of Molecular Engineering, Kyoto University, Kyoto, Japan
| | - L John Kennedy
- Division of Physics, School of Advanced Sciences, Vellore Institute of Technology University, Chennai, India
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4
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Improving gas-water interface properties and bioactivities of α-lactalbumin induced by three structurally different saponins. Food Hydrocoll 2023. [DOI: 10.1016/j.foodhyd.2023.108463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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5
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Zhu H, Zhang M, Wang P, Sun C, Xu W, Ma J, Zhu Y, Wang D. Exploring the regulating mechanism of heat induced gelation of myosin by binding with Mb hemin prosthetic group. Food Chem 2022; 382:132354. [DOI: 10.1016/j.foodchem.2022.132354] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 12/31/2021] [Accepted: 02/02/2022] [Indexed: 01/30/2023]
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6
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Ye YT, Zhang H, Deng JL, Li MZ, Chen ZX. l-Arginine inhibits the activity of α-amylase: Rapid kinetics, interaction and functional implications. Food Chem 2022; 380:131836. [PMID: 35086017 DOI: 10.1016/j.foodchem.2021.131836] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 11/15/2021] [Accepted: 12/08/2021] [Indexed: 11/27/2022]
Abstract
In this work, the rapid unfolding kinetics of pancreas α-amylase (PPA) induced by l-arginine and the interaction mechanism were investigated. The unfolding followed a first-level reaction kinetics equation, without intermediates. l-arginine interacted with PPA though diffusion-controlled process rather than complexion. The interaction between l-arginine and PPA resulted in a pronounced decrease in β-sheet and a significant increase in random coil, and thereby the enzyme activity decreased. However, the unfolding of PPA could be compensated and the second structure change could be recovered to some extent by the macromolecular crowded medium of Pluronics. Further insight into the mechanism disclosed that the broken H-bond network of water may contribute to PPA unfolding. This work provides a new perspective on the interaction of l-arginine with digestive enzyme. The unfolding mechanism of enzymes by may help to understand the effects of other structurally similar drugs, which is of concern in food-drug interactions.
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Affiliation(s)
- Yu-Tong Ye
- Molecular Food Science Laboratory, College of Food & Biology Engineering, Zhejiang Gongshang University, Hangzhou 310018, China
| | - Hai Zhang
- Molecular Food Science Laboratory, College of Food & Biology Engineering, Zhejiang Gongshang University, Hangzhou 310018, China
| | - Jun-Ling Deng
- Molecular Food Science Laboratory, College of Food & Biology Engineering, Zhejiang Gongshang University, Hangzhou 310018, China
| | - Mi-Zhuan Li
- Molecular Food Science Laboratory, College of Food & Biology Engineering, Zhejiang Gongshang University, Hangzhou 310018, China
| | - Zhong-Xiu Chen
- Molecular Food Science Laboratory, College of Food & Biology Engineering, Zhejiang Gongshang University, Hangzhou 310018, China.
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7
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Factors Influencing Dechlorane plus Distributions in Various Sheep Tissues. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19138004. [PMID: 35805663 PMCID: PMC9265682 DOI: 10.3390/ijerph19138004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 06/27/2022] [Accepted: 06/28/2022] [Indexed: 02/04/2023]
Abstract
Dechlorane plus (DP) is a potential persistent organic pollutant and its distribution in various tissues and organs of terrestrial organisms is currently unknown. DP concentrations in sheep tissues were determined in this study. The DP concentrations in the tissues decreased in the following order: abdominal fat > liver > stomach > heart > outer tenderloin > lung > hind leg meat > kidney > small intestine > tail fat > spleen > brain. Apart from brain and fat, anti-DP is enriched more readily than syn-DP in sheep tissues, but syn-DP is more readily enriched in brain and abdominal fat. The factors influencing DP distributions in sheep tissues were assessed by determining the DP to sheep serum albumin binding forces, binding types, and binding sites by fluorescence spectroscopy. The results indicated that anti-DP more readily binds to sheep serum albumin than does syn-DP. Therefore, sheep serum albumin will more readily transport anti-DP than syn-DP to sheep tissues, and anti-DP will be enriched more than syn-DP in the tissues. The molecular diameter of DP is the main factor affecting DP concentrations in sheep brain and fat because of the blood−brain barrier and because the main source of DP to abdominal fat is dermal contact.
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8
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4-Dimethylaminoantipyrine as a Broad Electrochemical Indicator for Immunosensors Platform. SENSORS 2022; 22:s22103681. [PMID: 35632090 PMCID: PMC9146155 DOI: 10.3390/s22103681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 04/21/2022] [Accepted: 05/03/2022] [Indexed: 11/17/2022]
Abstract
Here, we describe 4-dimethylaminoantipyrine (4-DMAA)-mediated interfacing as a broad biochemical indicator to stabilize and promote the higher response of electrodes for immunological detection. We hypothesized that the improved biological interactions of 4-DMAA with electrodes and biological samples may be due to the interaction properties of the benzene and pyrazole chemical groups with graphite and proteins, respectively. In order to demonstrate that 4-DMAA could be used as a general indicator in electrochemical immunoassays, we used peptides as probes for the diagnosis of four neglected tropical infectious diseases Tegumentary leishmaniasis, Visceral leishmaniasis, Strongyloidiasis, and Leprosy on commercial graphite screen-printed electrodes. 4-DMAA oxidation was used to indicate specific biological recognition between the epitope-based peptide and serum immunoglobulin G (IgG) from infected patients. We demonstrated that 4-DMAA should be incorporated into the electrodes prior to serum application, which avoids interference with its sensitivity and specificity. In addition, 4-DMAA oxidizes at a low anodic potential, and the oxidation peak is useful for detecting proteins in biological fluids. In summary, we have successfully demonstrated the broad application of 4-DMAA as a general indicator for the specific diagnosis of four infectious diseases in electrochemical immunosensors. Such a strategy is quite advantageous for indirect detection of proteins that lack electrochemical activities or are spatially inaccessible on the electrode surface. This new indicator opens a new avenue for monitoring biological recognition, especially for immunosensors.
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9
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Comparison of interaction mechanism between chlorogenic acid/luteolin and glutenin/gliadin by multi-spectroscopic and thermodynamic methods. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131219] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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10
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Alves JEF, Lucena MLC, de Souza Lucena AE, das Merces AAD, de Azevedo RDS, Sousa GLS, de Moura RO, Alves de Lima MDC, de Carvalho Júnior LB, de Almeida SMV. A simple method for obtaining human albumin and its use for in vitro interaction assays with indole-thiazole and indole-thiazolidinone derivatives. Int J Biol Macromol 2021; 192:126-137. [PMID: 34562539 DOI: 10.1016/j.ijbiomac.2021.09.109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 09/15/2021] [Accepted: 09/17/2021] [Indexed: 12/20/2022]
Abstract
This work aimed to develop a simple and low-cost method to obtain human serum albumin (HSA) and its consequent application for in vitro drug interaction assays. The HSA was purified by classic principles of plasma precipitation and thermocoagulation, using a multiple-stage fractionation. The quality of the final product was assessed by electrophoresis, protein dosage by the Lowry method and the pharmacopeial thermal stability. At the end, an isotonic solution of HSA with a total protein concentration of 2.7 mg·mL-1 was obtained, which was visualized as a single band corresponding to the molecular weight of 66 kDa. After the thermal stability test, there was no indication of turbidity or color change of the solution. Finally, the HSA was useful for interaction assays with indole-thiazole and indole-thiazolidinone derivatives through UV-vis absorption and fluorescence spectroscopic studies, as well as by docking molecular analysis. Derivatives quenched the intrinsic fluorescence of HSA, disrupted the tryptophan residues microenvironment, and probably bind at Sudlow's site I. Therefore, the simplified methodology developed in this work proved to be effective in obtaining HSA that can be applied to research goals including drug interaction assays.
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Affiliation(s)
| | | | | | | | - Rafael David Souto de Azevedo
- Laboratório de Biologia Molecular, Universidade de Pernambuco (UPE), Multicampi Garanhuns, Garanhuns, PE 55290-000, Brazil
| | - Gleyton Leonel Silva Sousa
- Programa de Doutorado em Química, Universidade Federal Rural do Rio de Janeiro, Seropédica, RJ 23897-000, Brazil
| | - Ricardo Olimpio de Moura
- Departamento de Ciências Biológicas e da Saúde, Universidade Estadual da Paraíba, João Pessoa, PB 58429-500, Brazil
| | - Maria do Carmo Alves de Lima
- Laboratório de Química e Inovação Terapêutica (LQIT) - Departamento de Antibióticos, Universidade Federal de Pernambuco, Recife, PE 50670-901, Brazil
| | | | - Sinara Mônica Vitalino de Almeida
- Laboratório de Imunopatologia Keizo Asami (LIKA), Universidade Federal de Pernambuco, Recife, PE 50670-901, Brazil; Laboratório de Biologia Molecular, Universidade de Pernambuco (UPE), Multicampi Garanhuns, Garanhuns, PE 55290-000, Brazil.
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11
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Copper(II) and oxidovanadium(IV) complexes of chromone Schiff bases as potential anticancer agents. J Biol Inorg Chem 2021; 27:89-109. [PMID: 34817681 DOI: 10.1007/s00775-021-01913-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 09/30/2021] [Indexed: 12/14/2022]
Abstract
We report the synthesis, characterization and biological screening of new chromone Schiff bases derived from the condensation of three 6-substituted-3-formyl-chromones with pyridoxal (HL1-3) and its Cu(II) complexes [Cu(L1-3)Cl], 1-3. For the 6-methyl derivative, HL2, the VIVO-complex [VO(L2)Cl] (5), as well as ternary Cu and VIVO complexes with 1,10-phenanthroline (phen), [Cu(L2)(phen)Cl] (4) and [VO(L2)(phen)Cl] (6), were also prepared and evaluated. Their stability in aqueous medium and radical scavenging activity toward DPPH are screened, with [Cu(L2)(phen)Cl] (4) showing hydrolytic stability and [VO(L2)(phen)Cl] (6) high radical scavenging activity. Spectroscopic studies establish bovine serum albumin (BSA), a model for HSA, as a potential reversible carrier of [Cu(L2)(phen)Cl] in blood with KBC ≈ 105 M-1. The cytotoxic activity of a group of compounds is evaluated against a panel of human cancer cell lines of different origin (ovary, cervix, brain and breast) and compared to normal cells. Our results indicate that Cu complexes are more cytotoxic than the ligands but not selective towards cancer cells. The most potent complexes (4 and 6) are further evaluated for their apoptotic potential, induction of reactive oxygen species (ROS) and genotoxicity. Both complexes efficiently triggered cell death through apoptosis as evaluated by DNA morphology and TUNEL assay, increased ROS formation as determined by DCFDA (2',7'-dichlorodihydrofluorescein diacetate) analysis, and induced genotoxic damage as visualized via COMET assay in all cancer cells under study. Therefore, 4 and 6 may be potential precursor anticancer molecules, yet they need to be targeted toward cancer cells.
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12
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Ribeiro AG, Alves JEF, Soares JCS, dos Santos KL, Jacob ÍTT, da Silva Ferreira CJ, dos Santos JC, de Azevedo RDS, de Almeida SMV, de Lima MDCA. Albumin roles in developing anticancer compounds. Med Chem Res 2021. [DOI: 10.1007/s00044-021-02748-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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13
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Recent advances in the determination of unbound concentration and plasma protein binding of drugs: Analytical methods. Talanta 2021; 225:122052. [DOI: 10.1016/j.talanta.2020.122052] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 12/17/2020] [Accepted: 12/23/2020] [Indexed: 02/08/2023]
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14
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Manganese Metal–Organic Framework: Chemical Stability, Photoluminescence Studies, and Biosensing Application. J Inorg Organomet Polym Mater 2021. [DOI: 10.1007/s10904-021-01888-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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15
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Sakthivel A, Jeyasubramanian K, Thangagiri B, Raja JD. Recent advances in schiff base metal complexes derived from 4-aminoantipyrine derivatives and their potential applications. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128885] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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16
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Binding Studies of AICAR and Human Serum Albumin by Spectroscopic, Theoretical, and Computational Methodologies. Molecules 2020; 25:molecules25225410. [PMID: 33228044 PMCID: PMC7699360 DOI: 10.3390/molecules25225410] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Revised: 11/08/2020] [Accepted: 11/10/2020] [Indexed: 12/01/2022] Open
Abstract
The interactions of small molecule drugs with plasma serum albumin are important because of the influence of such interactions on the pharmacokinetics of these therapeutic agents. 5-Aminoimidazole-4-carboxamide ribonucleoside (AICAR) is one such drug candidate that has recently gained attention for its promising clinical applications as an anti-cancer agent. This study sheds light upon key aspects of AICAR’s pharmacokinetics, which are not well understood. We performed in-depth experimental and computational binding analyses of AICAR with human serum albumin (HSA) under simulated biochemical conditions, using ligand-dependent fluorescence sensitivity of HSA. This allowed us to characterize the strength and modes of binding, mechanism of fluorescence quenching, validation of FRET, and intermolecular interactions for the AICAR–HSA complexes. We determined that AICAR and HSA form two stable low-energy complexes, leading to conformational changes and quenching of protein fluorescence. Stern–Volmer analysis of the fluorescence data also revealed a collision-independent static mechanism for fluorescence quenching upon formation of the AICAR–HSA complex. Ligand-competitive displacement experiments, using known site-specific ligands for HSA’s binding sites (I, II, and III) suggest that AICAR is capable of binding to both HSA site I (warfarin binding site, subdomain IIA) and site II (flufenamic acid binding site, subdomain IIIA). Computational molecular docking experiments corroborated these site-competitive experiments, revealing key hydrogen bonding interactions involved in stabilization of both AICAR–HSA complexes, reaffirming that AICAR binds to both site I and site II.
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17
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Liu Y, Huang L, Li D, Wang Y, Chen Z, Zou C, Liu W, Ma Y, Cao MJ, Liu GM. Re-assembled oleic acid-protein complexes as nano-vehicles for astaxanthin: Multispectral analysis and molecular docking. Food Hydrocoll 2020. [DOI: 10.1016/j.foodhyd.2020.105689] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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18
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Jiang Z, Li T, Ma L, Chen W, Yu H, Abdul Q, Hou J, Tian B. Comparison of interaction between three similar chalconoids and α-lactalbumin: Impact on structure and functionality of α-lactalbumin. Food Res Int 2020; 131:109006. [DOI: 10.1016/j.foodres.2020.109006] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Revised: 01/08/2020] [Accepted: 01/12/2020] [Indexed: 12/31/2022]
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19
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Parveen M, Aslam A, Nami SAA, Ahmad M. Z-Acrylonitrile Derivatives: Improved Synthesis, X-ray Structure, and Interaction with Human Serum Albumin. Curr Org Synth 2020; 16:1149-1160. [PMID: 31984921 DOI: 10.2174/1570179416666191008085806] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Revised: 07/22/2019] [Accepted: 08/05/2019] [Indexed: 11/22/2022]
Abstract
AIMS AND OBJECTIVE In the synthesis of heterocyclic compounds, acrylonitrile derivatives are the most important and appropriate precursors. These compounds are the most important intermediates and subunits for the enhancement of molecules having pharmaceutical or biological interests. Nitrogen-containing compounds have received extensive consideration in the literature over the years. MATERIALS AND METHODS A facile, economic and efficient method has been developed for the synthesis of acrylonitrile derivatives using p-nitrophenylacetonitrile and aromatic/heterocyclic aldehydes in the presence of zinc chloride at room temperature. Spectroscopic data were obtained using the following instruments: Fourier transform infrared spectra (KBr discs, 4000-400 cm-1) by Shimadzu IR-408 Perkin-Elmer 1800 instrument; 1H NMR and 13C NMR spectra by Bruker Avance-II 400 MHz using DMSO-d6 as a solvent containing TMS as the internal standard. RESULTS To continue our ongoing studies to synthesize heterocyclic and pharmaceutical compounds by mild, facile and efficient protocols, herein we wish to report our experimental results on the synthesis of acrylonitrile derivatives, using various aromatic/heterocyclic aldehydes and p-nitrophenylacetonitrile in the presence of zinc chloride in ethanolic media at room temperature. Some of the new compounds were tested for their human serum albumin activity (HSA) while a study of interaction with HSA protein was performed for compounds 3a and 3b. The results show that compound 3b binds tightly to HSA as compared to compound 3a. CONCLUSION It can be concluded that acrylonitrile derivatives can be synthesized by an efficient method via the reaction of p-nitrophenylacetonitrile with aromatic/heterocyclic aldehydes by the use of zinc chloride as an effective solid catalyst. The remarkable features of this procedure include excellent yields (90-95%), short reaction period (30 min.), moderate reaction environment, easy workup procedure and managing of the catalyst. This method may find a wide significance in organic synthesis for the synthesis of the Z-acrylonitrile.
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Affiliation(s)
- Mehtab Parveen
- Division of Organic Synthesis, Department of Chemistry, Aligarh Muslim University, Aligarh 202002, India
| | - Afroz Aslam
- Division of Organic Synthesis, Department of Chemistry, Aligarh Muslim University, Aligarh 202002, India
| | - Shahab A A Nami
- Department of Kulliyat, Faculty of Unani Medicine, Aligarh Muslim University, Aligarh 202002, India
| | - Musheer Ahmad
- Department of Applied Chemistry, Aligarh Muslim University, Aligarh 202002, India
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Parveen M, Aslam A, Alam M, Siddiqui MF, Bano B, Azaz S, Silva MR, Silva PSP. Synthesisand Characterization of Benzothiophene‐3‐carbonitrile Derivative and Its Interactions with Human Serum Albumin (HSA). ChemistrySelect 2019. [DOI: 10.1002/slct.201902378] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Mehtab Parveen
- Division of Organic SynthesisDepartment of ChemistryAligarh Muslim University Aligarh 202002 India
| | - Afroz Aslam
- Division of Organic SynthesisDepartment of ChemistryAligarh Muslim University Aligarh 202002 India
| | - Mahboob Alam
- Division of Chemistry and BiotechnologyDongguk University 123Dongdae-ro Gyeongju 780-714 Republic of Korea
| | | | - Bilqees Bano
- Department of BiochemistryAligarh Muslim University Aligarh 202002 India
| | - Shaista Azaz
- Division of Organic SynthesisDepartment of ChemistryAligarh Muslim University Aligarh 202002 India
| | - Manuela Ramos Silva
- CFisUCDepartment of PhysicsUniversity of Coimbra, P- 3004-516 Coimbra Portugal
| | - P. S. Pereira Silva
- CFisUCDepartment of PhysicsUniversity of Coimbra, P- 3004-516 Coimbra Portugal
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21
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Sheta SM, El‐Sheikh SM, Abd‐Elzaher MM, Salem SR, Moussa HA, Mohamed RM, Mkhalid IA. A novel biosensor for early diagnosis of liver cancer cases using smart nano‐magnetic metal–organic framework. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5249] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Sheta M. Sheta
- Department of Inorganic ChemistryNational Research Centre 33 El‐Behouth Street, Dokki Giza 12622 Egypt
| | - Said M. El‐Sheikh
- Department of Nanomaterials and NanotechnologyCentral Metallurgical R & D Institute Cairo 11421 Egypt
| | - Mohkles M. Abd‐Elzaher
- Department of Inorganic ChemistryNational Research Centre 33 El‐Behouth Street, Dokki Giza 12622 Egypt
| | - Salem R. Salem
- Biochemistry DepartmentEgypt Centre for Research and Regenerative Medicine Cairo 11887 Egypt
| | - Hanan A. Moussa
- Department of Inorganic ChemistryNational Research Centre 33 El‐Behouth Street, Dokki Giza 12622 Egypt
| | - Reda M. Mohamed
- Department of Nanomaterials and NanotechnologyCentral Metallurgical R & D Institute Cairo 11421 Egypt
- Chemistry Department, Faculty of ScienceKing Abdul‐Aziz University PO Box 80203 Jeddah 21589 Saudi Arabia
| | - Ibraheem A. Mkhalid
- Chemistry Department, Faculty of ScienceKing Abdul‐Aziz University PO Box 80203 Jeddah 21589 Saudi Arabia
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22
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Hu Y, Xie M, Wu X. Interaction studies of sodium cyclamate with DNA revealed by spectroscopy methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 220:117085. [PMID: 31146213 DOI: 10.1016/j.saa.2019.04.077] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 04/22/2019] [Accepted: 04/27/2019] [Indexed: 06/09/2023]
Abstract
The interaction between sodium cyclamate (SC) and calf thymus DNA in simulated physiological buffer (pH 7.4) using ethidium bromide (EB) as fluorescence probe was investigated by UV-vis spectrometry (UV), fluorescence, resonance light scattering (RLS) and Fourier transform infrared (FT-IR) spectroscopy, along with DNA melting studies and cyclic voltammetric (CV) measurements. The results indicate that SC can not only bind into the minor groove of DNA, but also intercalate into the DNA Base pairs. Based on UV data, the binding constant K and binding sites n of the formed DNA/SC complex were estimated to be 2.83 × 103 mol/L and 2.0, respectively. Fluorescence results demonstrate that the quenching of DNA/EB induced by SC can mainly be attributed to static procedure. The melting studies and CV analysis further confirm that the interaction mechanism between the SC and DNA is similar to that of DNA intercalator.The results of FT-IR spectra show that a specific interaction mainly exist between SC and adenine and guanine bases of DNA, which resulting in potential damage due to some change in the information structure. The DNA saturation binding value estimated to be 1.67 based on the RLS data also indicated that SC may cause damage of DNA.
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Affiliation(s)
- Yong Hu
- School of Food Science, Guangdong Pharmaceutical University, Zhong Shan 528458, PR China.
| | - Meiyi Xie
- School of Food Science, Guangdong Pharmaceutical University, Zhong Shan 528458, PR China
| | - Xiaoyong Wu
- School of Food Science, Guangdong Pharmaceutical University, Zhong Shan 528458, PR China
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23
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Sheta SM, El-Sheikh SM, Abd-Elzaher MM. Promising photoluminescence optical approach for triiodothyronine hormone determination based on smart copper metal-organic framework nanoparticles. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5069] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Sheta M. Sheta
- Department of Inorganic Chemistry; National Research Centre; 33, El-Behouth St., Dokki Giza 12622 Egypt
| | - Said M. El-Sheikh
- Department of Nanomaterials and Nanotechnology; Central Metallurgical R & D Institute; Cairo 11421 Egypt
| | - Mohkles M. Abd-Elzaher
- Department of Inorganic Chemistry; National Research Centre; 33, El-Behouth St., Dokki Giza 12622 Egypt
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24
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Sheta SM, El-Sheikh SM, Abd-Elzaher MM, Wassel AR. A novel nano-size lanthanum metal-organic framework based on 5-amino-isophthalic acid and phenylenediamine: Photoluminescence study and sensing applications. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.4777] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Sheta M. Sheta
- Inorganic Chemistry Department; National Research Centre; 33 El-Behouth St., Dokki Giza 12622 Egypt
| | - Said M. El-Sheikh
- Nanomaterials and Nanotechnology Department; Central Metallurgical R & D Institute; Cairo 11421 Egypt
| | - Mohkles M. Abd-Elzaher
- Inorganic Chemistry Department; National Research Centre; 33 El-Behouth St., Dokki Giza 12622 Egypt
| | - Ahmed R. Wassel
- Electron Microscope & Thin films Department, Physics Division; National Research Centre; 33 El-Behouth St., Dokki Giza 12622 Egypt
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25
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Zhan Z, Jia Y, Li D, Zhang X, Hu M. A water-stable terbium-MOF sensor for the selective, sensitive, and recyclable detection of Al3+ and CO32− ions. Dalton Trans 2019; 48:15255-15262. [DOI: 10.1039/c9dt03318a] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
A layered Tb-MOF structure exhibits high sensitivity, selectivity, and concurrently low limits of detection in relation to Al3+ and CO32− ions.
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Affiliation(s)
- Zhiying Zhan
- Inner Mongolia Key Laboratory of Chemistry and Physics of Rare Earth Materials; School of Chemistry and Chemical Engineering
- Inner Mongolia University
- Hohhot 010021
- China
| | - Yuejiao Jia
- Inner Mongolia Key Laboratory of Chemistry and Physics of Rare Earth Materials; School of Chemistry and Chemical Engineering
- Inner Mongolia University
- Hohhot 010021
- China
| | - Donghua Li
- Inner Mongolia Key Laboratory of Chemistry and Physics of Rare Earth Materials; School of Chemistry and Chemical Engineering
- Inner Mongolia University
- Hohhot 010021
- China
| | - Xiaolei Zhang
- Inner Mongolia Key Laboratory of Chemistry and Physics of Rare Earth Materials; School of Chemistry and Chemical Engineering
- Inner Mongolia University
- Hohhot 010021
- China
| | - Ming Hu
- Inner Mongolia Key Laboratory of Chemistry and Physics of Rare Earth Materials; School of Chemistry and Chemical Engineering
- Inner Mongolia University
- Hohhot 010021
- China
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26
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Karthikeyan S, Bharanidharan G, Ragavan S, Kandasamy S, Chinnathambi S, Udayakumar K, Mangaiyarkarasi R, Sundaramoorthy A, Aruna P, Ganesan S. Comparative Binding Analysis of N-Acetylneuraminic Acid in Bovine Serum Albumin and Human α-1 Acid Glycoprotein. J Chem Inf Model 2018; 59:326-338. [PMID: 30481010 DOI: 10.1021/acs.jcim.8b00558] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The present study focuses on the determination of the biologically significant N-acetylneuraminic acid (NANA) drug binding interaction mechanism between bovine serum albumin (BSA) and human α-1 acid glycoprotein (HAG) using various optical spectroscopy and computational methods. The steady state fluorescence spectroscopy result suggests that the fluorescence intensity of BSA and HAG was quenched by NANA in a static mode of quenching. Further time-resolved emission spectroscopy measurements confirm that mode of quenching mechanism of NANA in the BSA and HAG system. The FT-IR, excitation-emission matrix and circular dichroism (CD) analysis confirms the presence of NANA in the HAG, BSA system, and fluorescence resonance energy transfer analysis shows that NANA transfers energy between the HAG and BSA system. The molecular docking result shows good binding affinity in both protein complexes, and further molecular dynamics simulations and charge distribution analysis were performed to gain more insight into the binding interaction mechanism of NANA in the HAG and BSA complex.
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Affiliation(s)
- Subramani Karthikeyan
- Department of Medical Physics , Anna University , Chennai - 600 025 , India.,Department of Organic Chemistry, Science Faculty , Peoples' Friendship University of Russia (RUDN University) , MikluhoMaklaya St., 6 , Moscow , Russia , 117198
| | | | - Sriram Ragavan
- Centre of Advanced Study in Crystallography and Biophysics , University of Madras , Chennai - 600 025 , India
| | | | - Shanmugavel Chinnathambi
- International Center for Young Scientists , National Institute for Materials Science (NIMS) , 1-2-1 Sengen , Tsukuba , Ibaraki 305-0047 , Japan
| | - Kanniyappan Udayakumar
- Postdoctoral Research Fellow, University of Montreal , Saint-Justine Hospital University Center , 3175 Cote Sainte-Catherine , Montreal , Quebec H3T1C5 , Canada
| | | | | | - Prakasarao Aruna
- Department of Medical Physics , Anna University , Chennai - 600 025 , India
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27
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Siddiqui MF, Khan MS, Husain FM, Bano B. Deciphering the binding of carbendazim (fungicide) with human serum albumin: A multi-spectroscopic and molecular modelling studies. J Biomol Struct Dyn 2018; 37:2230-2241. [DOI: 10.1080/07391102.2018.1481768] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Mohd Faizan Siddiqui
- Department of Biochemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Mohd Shahnawaz Khan
- Protein Research Chair, Department of Biochemistry, College of Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Fohad Mabood Husain
- Department of Food Science and Nutrition, Faculty of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi ArabiaCommunicated by Ramaswamy H. Sarma
| | - Bilqees Bano
- Department of Biochemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
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28
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Ali HM, El-Hashemy MA. Analytical investigation of the influence of ornidazole on the native protein fluorescence. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 201:178-184. [PMID: 29751351 DOI: 10.1016/j.saa.2018.05.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Revised: 04/06/2018] [Accepted: 05/01/2018] [Indexed: 06/08/2023]
Abstract
A novel spectrofluorimetric method for the determination of ornidazole (ORN) in pure form and dosage forms was developed based on the influence of ORN on the native fluorescence of bovine serum albumin (BSA) in a stimulated physiological environment. The obtained data reveal that the presence of ORN has a strong quenching effect on the fluorescence of BSA through both a dynamic and a static process. The parameters of the binding of ORN to BSA were calculated at different temperatures. Thermodynamic parameters values suggest a role of electrostatic and hydrophobic forces in the binding of ORN to BSA. The investigated method for the determination of ORN is accurate, precise and sensitive with a detection limit of 0.106 μg/mL and a quantification limit of 0.353 μg/mL. The quenching method was applied successfully in the determination of ORN in pure form and dosage forms.
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Affiliation(s)
- Hazim M Ali
- Department of Chemistry, College of Science, Jouf University, Sakaka, Saudi Arabia; Forensic Chemistry Department, Forensic Medicine Authority, Egypt.
| | - Mohammed A El-Hashemy
- Department of Chemistry, College of Science, Jouf University, Sakaka, Saudi Arabia; Air Pollution Research Department, Environmental Research Division, National Research Centre, 12622, Egypt
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29
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Jiao Q, Wang R, Jiang Y, Liu B. Study on the interaction between active components from traditional Chinese medicine and plasma proteins. Chem Cent J 2018; 12:48. [PMID: 29728878 PMCID: PMC5935606 DOI: 10.1186/s13065-018-0417-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Accepted: 04/24/2018] [Indexed: 02/06/2023] Open
Abstract
Traditional Chinese medicine (TCM), as a unique form of natural medicine, has been used in Chinese traditional therapeutic systems over two thousand years. Active components in Chinese herbal medicine are the material basis for the prevention and treatment of diseases. Research on drug-protein binding is one of the important contents in the study of early stage clinical pharmacokinetics of drugs. Plasma protein binding study has far-reaching influence on the pharmacokinetics and pharmacodynamics of drugs and helps to understand the basic rule of drug effects. It is important to study the binding characteristics of the active components in Chinese herbal medicine with plasma proteins for the medical science and modernization of TCM. This review summarizes the common analytical methods which are used to study the active herbal components-protein binding and gives the examples to illustrate their application. Rules and influence factors of the binding between different types of active herbal components and plasma proteins are summarized in the end. Finally, a suggestion on choosing the suitable technique for different types of active herbal components is provided, and the prospect of the drug-protein binding used in the area of TCM research is also discussed.
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Affiliation(s)
- Qishu Jiao
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, 102488, China
| | - Rufeng Wang
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, 102488, China
| | - Yanyan Jiang
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, 102488, China
| | - Bin Liu
- School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing, 102488, China.
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30
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Characterization of the Interaction Between Caffeine and Soybean Selenoprotein by Spectroscopic and Cyclic Voltammetric Methods. J SOLUTION CHEM 2017. [DOI: 10.1007/s10953-017-0697-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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31
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Nerusu A, Reddy PS, Ramachary DB, Subramanyam R. Unraveling the Stability of Plasma Proteins upon Interaction of Synthesized Androstenedione and Its Derivatives-A Biophysical and Computational Approach. ACS OMEGA 2017; 2:6514-6524. [PMID: 30023521 PMCID: PMC6045264 DOI: 10.1021/acsomega.7b00577] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 09/20/2017] [Indexed: 06/08/2023]
Abstract
4-Androstene-3-17-dione (4A), also known as androstenedione, is the key intermediate of steroid metabolism. 5β-Androstane-3-17-dione (5A) and (+)-6-methyl-5β-androstane-3-17-dione (6M) are the steroid derivatives of androstenedione. The interactions of androstenedione and its derivatives with plasma proteins are important in understanding the distribution and bioavailability of these molecules. In our present study, we have studied the binding affinity of androstenedione and its derivatives with plasma proteins such as human serum albumin (HSA) and α1-acid glycoprotein (AGP). Our results showed that the 4A, 5A, and 6M steroid molecules can form stable complexes with HSA and AGP. The affinity of the studied steroid molecules with HSA is high compared to that with AGP, and the binding constants obtained for 4A, 5A, and 6M with HSA are 5.3 ± 2 × 104, 5.3 ± 1 × 104, and 9.5 ± 0.2 × 104 M-1, respectively. Further, binding sites of these steroid molecules in HSA are identified using molecular displacement and docking studies: it is found that 4A and 5A bind to domain III while 6M binds to domain II of HSA. Furthermore, the circular dichroism data revealed that there is a partial unfolding of the protein while interacting with androstenedione and its derivatives. Also, molecular dynamics simulations were carried out for HSA-androstenedione and its derivative complexes to understand their stability; hence, these results yielded that HSA-androstenedione and its derivative complexes were stabilized after 15 ns and maintained their stable structures.
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Affiliation(s)
- Aparna Nerusu
- Department
of Plant Science, School of Life Sciences,
University of Hyderabad, Gachibowli, Hyderabad, Telangana 500046, India
| | - P. Srinivasa Reddy
- Catalysis
Laboratory, School of Chemistry, University
of Hyderabad, Gachibowli, Hyderabad, Telangana 500046, India
| | - Dhevalapally B. Ramachary
- Catalysis
Laboratory, School of Chemistry, University
of Hyderabad, Gachibowli, Hyderabad, Telangana 500046, India
| | - Rajagopal Subramanyam
- Department
of Plant Science, School of Life Sciences,
University of Hyderabad, Gachibowli, Hyderabad, Telangana 500046, India
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Chaves OA, Jesus CSH, Cruz PF, Sant'Anna CMR, Brito RMM, Serpa C. Evaluation by fluorescence, STD-NMR, docking and semi-empirical calculations of the o-NBA photo-acid interaction with BSA. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 169:175-181. [PMID: 27376757 DOI: 10.1016/j.saa.2016.06.028] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 06/03/2016] [Accepted: 06/17/2016] [Indexed: 06/06/2023]
Abstract
Serum albumins present reversible pH dependent conformational transitions. A sudden laser induced pH-jump is a methodology that can provide new insights on localized protein (un)folding processes that occur within the nanosecond to microsecond time scale. To generate the fast pH jump needed to fast-trigger a protein conformational event, a photo-triggered acid generator as o-nitrobenzaldehyde (o-NBA) can be conveniently used. In order to detect potential specific or nonspecific interactions between o-NBA and BSA, we have performed ligand-binding studies using fluorescence spectroscopy, saturation transfer difference (STD) NMR, molecular docking and semi-empirical calculations. Fluorescence quenching indicates the formation of a non-fluorescent complex in the ground-state between the fluorophore and the quencher, but o-NBA does not bind much effectively to the protein (Ka~4.34×10(3)M(-1)) and thus can be considered a relatively weak binder. The corresponding thermodynamic parameters: ΔG°, ΔS° and ΔH° showed that the binding process is spontaneous and entropy driven. Results of (1)H STD-NMR confirm that the photo-acid and BSA interact, and the relative intensities of the signals in the STD spectra show that all o-NBA protons are equally involved in the binding process, which should correspond to a nonspecific interaction. Molecular docking and semi-empirical calculations suggest that the o-NBA binds preferentially to the Trp-212-containing site of BSA (FA7), interacting via hydrogen bonds with Arg-217 and Tyr-149 residues.
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Affiliation(s)
- Otávio A Chaves
- Departament of Chemistry, Universidade Federal Rural do Rio de Janeiro, BR 465, km 47, 23890-000 Seropédica, RJ, Brazil; CQC, Chemistry Department, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Catarina S H Jesus
- CQC, Chemistry Department, University of Coimbra, 3004-535 Coimbra, Portugal; Center for Neuroscience and Cell Biology, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Pedro F Cruz
- CQC, Chemistry Department, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Carlos M R Sant'Anna
- Departament of Chemistry, Universidade Federal Rural do Rio de Janeiro, BR 465, km 47, 23890-000 Seropédica, RJ, Brazil
| | - Rui M M Brito
- Departament of Chemistry, Universidade Federal Rural do Rio de Janeiro, BR 465, km 47, 23890-000 Seropédica, RJ, Brazil; CQC, Chemistry Department, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Carlos Serpa
- CQC, Chemistry Department, University of Coimbra, 3004-535 Coimbra, Portugal.
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Buddanavar AT, Nandibewoor ST. Multi-spectroscopic characterization of bovine serum albumin upon interaction with atomoxetine. J Pharm Anal 2016; 7:148-155. [PMID: 29404031 PMCID: PMC5790691 DOI: 10.1016/j.jpha.2016.10.001] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Revised: 10/07/2016] [Accepted: 10/14/2016] [Indexed: 01/16/2023] Open
Abstract
The quenching interaction of atomoxetine (ATX) with bovine serum albumin (BSA) was studied in vitro under optimal physiological condition (pH=7.4) by multi-spectroscopic techniques. The mechanism of ATX-BSA system was a dynamic quenching process and was confirmed by the fluorescence spectra and lifetime measurements. The number of binding sites, binding constants and other binding characteristics were computed. Thermodynamic parameters ∆H° and ∆S° indicated that intermolecular hydrophobic forces predominantly stabilized the drug-protein system. The average binding distance between BSA and ATX was studied by Försters theory. UV-absorption, Fourier transform infrared spectroscopy (FT-IR), circular dichroism (CD), synchronous spectra and three-dimensional (3D) fluorescence spectral results revealed the changes in micro-environment of secondary structure of protein upon the interaction with ATX. Displacement of site probes and the effects of some common metal ions on the binding of ATX with BSA interaction were also studied.
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Naggar AH, El Kaoutit M, Naranjo-Rodriguez I, El-Sayed AY, Hidalgo-Hidalgo de Cisneros JL. Voltammetric and Spectroscopic Investigation of the Interaction Between 1,4-Benzodiazepines and Bovine Serum Albumin. J SOLUTION CHEM 2016. [DOI: 10.1007/s10953-016-0532-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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35
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Peng SH, Lv BB, Ali A, Wang JM, Ying X, Wang H, Liu JB, Ji LN, Liu HY. The magnetic properties, DNA/HSA binding and nuclease activity of manganese N-confused porphyrin. J PORPHYR PHTHALOCYA 2016. [DOI: 10.1142/s1088424616500449] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The first oxidative cleavage of DNA by manganese [Formula: see text]-confused porphyrin [chloro(2-aza-2-methyl-5,10,15,20-tetrakis([Formula: see text]-chlorophenyl)-21-carbaporphyrin)manganese(III), 1] using H2O2 as oxidant agent and its magnetic, calf thymus DNA(ct-DNA)- and human serum albumin (HSA) binding properties were investigated. The magnitude of the axial (D) zero-field splitting for the mononuclear Mn(III) center in 1 was determined to be approximately 2.71 cm[Formula: see text] by paramagnetic susceptibility measurements. The DNA- and HSA binding experimental results showed that 1 bound to ct-DNA via an outside groove binding mode and the hydrophobic cavity located in subdomain IIA of HSA with the binding constant of 4.144 × 105 M[Formula: see text] and [Formula: see text] 106 M[Formula: see text], respectively. Thermodynamic parameters revealed that both DNA- and HSA binding were spontaneous process. The main driven forces were the hydrogen bond and van der Waals for the former, but hydrophobic interaction for the latter, which were further confirmed by molecular docking modeling. Manganese [Formula: see text]-confused porphyrin 1 could cleave the supercoiled plasmid DNA efficiently in the presence of hydrogen peroxide. Hydroxyl radical ([Formula: see text]OH) was found the active species for oxidative damage of DNA.
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Affiliation(s)
- Su-Hong Peng
- Department of Chemistry, South China University of Technology, Guangzhou 510641, China
| | - Biao-Biao Lv
- Department of Applied Physics, South China University of Technology, Guangzhou 510641, China
| | - Atif Ali
- Department of Chemistry, South China University of Technology, Guangzhou 510641, China
| | - Jia-Min Wang
- Department of Chemistry, South China University of Technology, Guangzhou 510641, China
| | - Xiao Ying
- Department of Applied Physics, South China University of Technology, Guangzhou 510641, China
| | - Hui Wang
- State Key Laboratory Optoelectronics Materials and Technologies, Sun Yat-Sen University, Guangzhou 510275, China
| | - Jin-Bin Liu
- Department of Chemistry, South China University of Technology, Guangzhou 510641, China
| | - Liang-Nian Ji
- State Key Laboratory Optoelectronics Materials and Technologies, Sun Yat-Sen University, Guangzhou 510275, China
- MOE Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, China
| | - Hai-Yang Liu
- Department of Chemistry, South China University of Technology, Guangzhou 510641, China
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36
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Li T, Cheng Z, Cao L, Jiang X. Comparison of interactions between three food colorants and BSA. Food Chem 2016; 194:740-8. [DOI: 10.1016/j.foodchem.2015.08.067] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2015] [Revised: 08/07/2015] [Accepted: 08/18/2015] [Indexed: 10/23/2022]
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Premnath D, Selvakumar PM, Ravichandiran P, Selvan GT, Indiraleka M, Vennila JJ. Synthesis and spectroscopic characterization of fluorescent 4-aminoantipyrine analogues: Molecular docking and in vitro cytotoxicity studies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 153:118-123. [PMID: 26298678 DOI: 10.1016/j.saa.2015.08.008] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2015] [Revised: 07/23/2015] [Accepted: 08/04/2015] [Indexed: 06/04/2023]
Abstract
Two substituted aromatic carbonyl compounds (compounds 1 and 2) of 4-aminoantipyrine were synthesized by condensation of fluorine substituted benzoyl chlorides and 4-aminoantipyrine. The structures of synthesized derivatives were established on the basis of UV-Vis, IR, and Mass, (1)H, (13)C NMR and Fluorescence spectroscopy. Both compounds showed significant fluorescence emission and two broad emission bands were observed in the region at 340 nm and 450 nm on excitation at 280 nm. Theoretically to prove that the molecule has anticancer activity against cervical cancer cells, the compounds were analyzed for molecular docking interactions with HPV16-E7 target protein by Glide protocol. Furthermore, 4-aminoantipyrine derivatives were evaluated for their in vitro cytotoxic activity against human cervical cancer cells (SiHa) by MTT assay. Compound 1 showed two fold higher activity (IC50=0.912 μM) over compound 2, and its activity was similar to that of Pazopanib, suggesting that although the two compounds were chemically very similar the difference in substituent on the phenyl moiety caused changes in properties.
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Affiliation(s)
- D Premnath
- Department of Bioinformatics, School of Biotechnology and Health Science, Karunya University, Coimbatore 641114, Tamilnadu, India.
| | - P Mosae Selvakumar
- Department of Chemistry, School of Science and Humanities, Karunya University, Coimbatore 641114, Tamilnadu, India
| | - P Ravichandiran
- Department of Chemistry, School of Science and Humanities, Karunya University, Coimbatore 641114, Tamilnadu, India
| | - G Tamil Selvan
- Department of Chemistry, School of Science and Humanities, Karunya University, Coimbatore 641114, Tamilnadu, India
| | - M Indiraleka
- Department of Bio Technology, Mepco Schlenk Engineering College, Sivakasi, Tamilnadu, India
| | - J Jannet Vennila
- Department of Bioinformatics, School of Biotechnology and Health Science, Karunya University, Coimbatore 641114, Tamilnadu, India
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38
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Tu B, Wang Y, Mi R, Ouyang Y, Hu YJ. Evaluation of the interaction between naringenin and human serum albumin: Insights from fluorescence spectroscopy, electrochemical measurement and molecular docking. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 149:536-543. [PMID: 25978022 DOI: 10.1016/j.saa.2015.04.087] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2015] [Revised: 03/18/2015] [Accepted: 04/21/2015] [Indexed: 06/04/2023]
Abstract
Naringenin (Nar) is a flavanone compound found in grapefruits that is endowed with diverse pharmacological and biological activities. Here, the interaction between Nar and human serum albumin (HSA) was investigated via various methods, including fluorescence spectroscopy, electrochemical methods and molecular docking. The Stern-Volmer quenching constants inversely correlated with temperature, demonstrating that the fluorescence quenching about HSA-Nar system is initiated by the formation of a compound, which has confirmed by electrochemical measurements. Three-dimensional fluorescence demonstrated that Nar induces the slight unfolding of the polypeptides of HSA. The calculated thermodynamic parameters suggesting that the binding of Nar to HSA is spontaneous, and the mainly force is electrostatic interactions. In addition, site marker competitive experiments indicated that Nar binds to HSA both on site I (subdomain IIA) and site II (subdomain IIIA), with higher affinity to the latter one, consistence with molecular docking. Furthermore, the fluorescence resonance energy transfer (FRET) experiment showed the binding distance (r) is 2.65 nm. And the effects of metal ions on the HSA-Nar system are also discussed.
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Affiliation(s)
- Bao Tu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry, Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, Department of Chemistry, Hubei Normal University, Huangshi 435002, PR China
| | - Yang Wang
- Hubei Collaborative Innovation Center for Rare Metal Chemistry, Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, Department of Chemistry, Hubei Normal University, Huangshi 435002, PR China
| | - Ran Mi
- Hubei Collaborative Innovation Center for Rare Metal Chemistry, Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, Department of Chemistry, Hubei Normal University, Huangshi 435002, PR China
| | - Yu Ouyang
- Hubei Collaborative Innovation Center for Rare Metal Chemistry, Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, Department of Chemistry, Hubei Normal University, Huangshi 435002, PR China.
| | - Yan-Jun Hu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry, Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, Department of Chemistry, Hubei Normal University, Huangshi 435002, PR China.
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Farahani BV, Bardajee GR, Rajabi FH, Hooshyar Z. Study on the interaction of Co (III) DiAmsar with serum albumins: spectroscopic and molecular docking methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 135:410-416. [PMID: 25105263 DOI: 10.1016/j.saa.2014.06.078] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Revised: 05/27/2014] [Accepted: 06/01/2014] [Indexed: 06/03/2023]
Abstract
This study was designed to examine the interaction of cobalt-3,6,10,13,16,19-hexaazabicyclo[6.6.6]eicosane-1,8-diamine (Co(III) DiAmsar) as a hexadentate ligand with human serum albumin (HSA) and bovine serum albumin (BSA) under physiological conditions in Tris-HCl buffer solution at pH 7.4. To this aim, at first, Co (III) DiAmsar was synthesized and characterized by nuclear magnetic resonance (NMR), and mass spectroscopy and then its interaction with HSA and BSA was investigated by means of various spectroscopic methods (Fourier transform infrared (FT-IR), UV-visible (UV-vis), fluorescence, and cyclic voltammetry (CV)) and molecular docking technique. The results of fluorescence titration revealed that the Co (III) DiAmsar strongly quench the intrinsic fluorescence of HSA and BSA through a static quenching procedure. Binding constants (Ka) and the number of binding sites (n∼1) were calculated using Stern-Volmer equations. The ΔG parameters at different temperatures were calculated. Subsequently, the values of ΔH and ΔS were also calculated, which revealed that the van der Waals and hydrogen bonding interaction splay a major role in Co (III) DiAmsar-HSA and Co (III) DiAmsar-BSA associations. The distance r between donor (HSA and BSA) and acceptor (Co (III) DiAmsar) was obtained according to fluorescence resonance energy transfer. The data obtained by the molecular modeling study revealed the surrounding residues of HSA and BSA around Co (III) DiAmsar.
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Affiliation(s)
- Bahman Vasheghani Farahani
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, P.O. Box 288, Qazvin 34149, Iran.
| | | | - Farzaneh Hosseinpour Rajabi
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, P.O. Box 288, Qazvin 34149, Iran
| | - Zari Hooshyar
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, P.O. Box 288, Qazvin 34149, Iran
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40
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Tu B, Chen ZF, Liu ZJ, Cheng LY, Hu YJ. Interaction of flavones with DNA in vitro: structure–activity relationships. RSC Adv 2015. [DOI: 10.1039/c5ra04505c] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
The structure–activity relationship of the different flavones has been investigated, which may meaningful for drug discovery, and novel drug design.
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Affiliation(s)
- Bao Tu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Zhi-Feng Chen
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Zhi-Juan Liu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Li-Yang Cheng
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
| | - Yan-Jun Hu
- Hubei Collaborative Innovation Center for Rare Metal Chemistry
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology
- Department of Chemistry
- Hubei Normal University
- Huangshi 435002
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Madrakian T, Bagheri H, Afkhami A. Determination of human albumin in serum and urine samples by constant-energy synchronous fluorescence method. LUMINESCENCE 2014; 30:576-82. [PMID: 25377137 DOI: 10.1002/bio.2788] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2013] [Revised: 07/27/2014] [Accepted: 09/03/2014] [Indexed: 12/16/2022]
Abstract
A sensitive spectrofluorimetric method using constant-energy synchronous fluorescence technique is proposed for the determination of human albumin without separation. In this method, no reagent was used for enhancement of the fluorescence signal of albumin in the solution. Effects of some parameters, such as energy difference between excitation and emission monochromators (ΔE), emission and excitation slit widths and scan rate of wavelength were studied and the optimum conditions were established. For this purpose factorial design and response surface method were employed for optimization of the effective parameters on the fluorescence signal. The results showed that the scan rate of the wavelength has no significant effect on the analytical signal. The calibration curve was linear in the range 0.1-220.0 µg mL(-1) of albumin with a detection limit of 7.0 × 10(-3) µg mL(-1). The relative standard deviations (RSD) for six replicate measurements of albumin were calculated as 2.2%, 1.7% and 1.3% for 0.5, 10.0 and 100.0 µg mL(-1) albumin, respectively. Furthermore the proposed method has been employed for the determination of albumin in human serum and urine samples.
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Affiliation(s)
| | | | - Abbas Afkhami
- Faculty of Chemistry, Bu-Ali Sina University, Hamedan, Iran
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In vitro study on the interaction of Mn(II)-DiAmsar with human serum albumin (HSA) and bovine serum albumin (BSA) by spectroscopic and molecular docking methods. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2014. [DOI: 10.1007/s13738-014-0530-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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