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Chakroborty S, Shakerzadeh E, Yadav T, Mishra NP, Barik A, Upadhyay V, Abhilasha, Soren S, Malviya J, Panda AR, Uniyal K, Kumar N, Wagadre S, Pandey FP. In silico investigation on interaction of small Ag 6 nano-particle cluster with tyramine neurotransmitter. Sci Rep 2023; 13:20200. [PMID: 37980377 PMCID: PMC10657472 DOI: 10.1038/s41598-023-45847-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 10/24/2023] [Indexed: 11/20/2023] Open
Abstract
The interaction of tyramine neurotransmitter with silver nano-particle (Ag6) cluster is explored in terms of the molecular structure, electronic properties and NBO analysis of tyramine-AgNPs bio-molecular conjugate. The adsorption mechanism of tyramine onto the Ag6 cluster has been investigated through computing of the electronic and geometrical properties in addition to the adsorption energies in various possible configurations. The magnitude of adsorption energy corresponding to the most favorable tyramine-Ag6 bio-molecular conjugate has been computed to be - 14.36 kcal/mol in the gas phase, which infers a good adsorption of tyramine with AgNPs cluster suggesting the practical applications of tyramine-AgNPs bio-molecular conjugates in bio-sensing, drug delivery, bio-imaging and other applications. Different electronic properties such as the energy gap of HOMO-LUMO, Fermi level and work function have been investigated in detail. Moreover, the effect of aqueous media on adsorption energy and electronic properties of the most favorable tyramine-AgNPs bio-molecular conjugate is investigated in order to understand the impact of the real biological situation.
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Affiliation(s)
- Subhendu Chakroborty
- Department of Basic Sciences, IITM, IES University, Bhopal, Madhya Pradesh, 462044, India.
| | - E Shakerzadeh
- Chemistry Department, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - T Yadav
- Department of Basic Sciences, IITM, IES University, Bhopal, Madhya Pradesh, 462044, India.
| | - Nilima Priyadarsini Mishra
- Department of Chemistry, Indian Institute of Technology Ropar, Nangal Road, Rupnagar, 140001, Punjab, India
| | - Arundhati Barik
- CIPET: Institute of Petrochemicals Technology [IPT], Bhubaneswar, Odisha, India
| | - Versha Upadhyay
- Botany Department, Maya Group of Colleges Dehradun, Dehradun, India
| | - Abhilasha
- Dolphin PG Institute of Biomedical and Natural Sciences, Manduwala, Dehradun, Uttrakhand, India
| | - Siba Soren
- Department of Chemistry, Govt. Women's College, Baripada, 757001, India
| | - Jitendra Malviya
- Department of Life Sciences & Biological Sciences, IES University, Bhopal, India.
| | - Amiya Ranjan Panda
- Kabi Samrat Upendra Bhanja (KSUB) College, Bhanjanagar, Ganjam, Odisha, India
| | - Kartik Uniyal
- Department of Biochemistry and Biotechnology, Sardar Bhagwan Singh University Balawala, Dehradun, 248161, Uttrakhand, India
| | - Narendra Kumar
- Alpine Institute of Management and Technology Dehradun (Uttarakhand), Dehradun, India
| | - Shradha Wagadre
- Department of Basic Sciences, IITM, IES University, Bhopal, Madhya Pradesh, 462044, India
| | - F P Pandey
- Scitechesy Research and Technology Private Limited, Central Discovery Center, Banaras Hindu University, Varanasi, Uttar Pradesh, India
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Pan X, Matthews K, Lawson B, Kamenetska M. Single-Molecule Conductance of Intramolecular Hydrogen Bonding in Histamine on Gold. J Phys Chem Lett 2023; 14:8327-8333. [PMID: 37695735 DOI: 10.1021/acs.jpclett.3c02172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/13/2023]
Abstract
We perform single-molecule conductance measurements and DFT calculations on histamine, a biogenic amine that contains a flexible aliphatic linker and several nitrogen moieties with a potential for hydrogen bonding. Our study determines that junctions containing the free-base form of histamine can bridge through a molecular structure containing an intramolecular hydrogen bond. Conductance of this structure is higher than that through the saturated aliphatic linker. Flicker noise analysis of junction conductance confirms that transport occurs through the hydrogen bond and establishes a benchmark for noise measurements in hydrogen-bonded junctions. Overall, our work provides insights into the formation and conduction of intramolecular hydrogen bonding in single-molecule conductance measurements and into the conformations of the neurotransmitter histamine on noble metal surfaces.
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Affiliation(s)
- Xiaoyun Pan
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Katherine Matthews
- Department of Physics and Astronomy, Haverford College, Haverford, Pennsylvania 1904, United States
| | - Brent Lawson
- Department of Physics, Boston University, Boston, Massachusetts 02215, United States
| | - Maria Kamenetska
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
- Department of Physics, Boston University, Boston, Massachusetts 02215, United States
- Divistion of Material Science and Engineering, Boston University, Boston, Massachusetts 02215, United States
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Zhu H, Liu S, Guo Z, Yan K, Shen J, Zhang Z, Chen J, Guo Y, Liu L, Wu X. Strong histamine torsion Raman spectrum enables direct, rapid, and ultrasensitive detection of allergic diseases. iScience 2021; 24:103384. [PMID: 34825143 PMCID: PMC8605255 DOI: 10.1016/j.isci.2021.103384] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 09/29/2021] [Accepted: 10/27/2021] [Indexed: 11/24/2022] Open
Abstract
Allergic diseases are closely related to degranulation and release of histamine and difficult to diagnose because non-allergic diseases also exhibit the same clinical symptoms as allergy. Here, we report direct, rapid, and ultrasensitive detection of histamine using low-frequency molecular torsion Raman spectroscopy. We show that the low-frequency (<200 cm-1) Raman spectral intensities are stronger by one order of magnitude than those of the high-frequency Raman ones. Density functional theory calculation and nuclear magnetic resonance spectroscopy identify the strong spectral feature to be from torsions of carbon-carbon single bonds, which produce large variations of the polarizability densities in the imidazole ring and ethyl amino side chain. Using an omniphobic substrate and surface plasmonic effect of Au@SiO2 nanoparticles, the detection limit (signal-noise ratio >3) of histamine reaches 10-8 g/L in water and 10-6 g/L in serum. This scheme thus opens new lines of inquiry regarding the clinical diagnosis of allergic diseases.
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Affiliation(s)
- Haogang Zhu
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Shuo Liu
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Zijing Guo
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Kun Yan
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Jiancang Shen
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Zhiyong Zhang
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Jian Chen
- National Laboratory of Solid States Microstructures and Research Institute of Superconductor Electronics, Nanjing University, Nanjing 210093, China
| | - Yachong Guo
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
- Kuang Yaming Honors School, Nanjing University, Nanjing 210023, China
- Leibniz-Institut für Polymerforschung Dresden, Hohe Strasse 6, 01069 Dresden, Germany
| | - Lizhe Liu
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
| | - Xinglong Wu
- National Laboratory of Solid States Microstructures and Key Laboratory of Modern Acoustics, MOE, Institute of Acoustics, Nanjing University, Nanjing 210093, China
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Influence of Sample Matrix on Determination of Histamine in Fish by Surface Enhanced Raman Spectroscopy Coupled with Chemometric Modelling. Foods 2021; 10:foods10081767. [PMID: 34441544 PMCID: PMC8391157 DOI: 10.3390/foods10081767] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 07/27/2021] [Accepted: 07/29/2021] [Indexed: 02/03/2023] Open
Abstract
Histamine fish poisoning is a foodborne illness caused by the consumption of fish products with high histamine content. Although intoxication mechanisms and control strategies are well known, it remains by far the most common cause of seafood-related health problems. Since conventional methods for histamine testing are difficult to implement in high-throughput quality control laboratories, simple and rapid methods for histamine testing are needed to ensure the safety of seafood products in global trade. In this work, the previously developed SERS method for the determination of histamine was tested to determine the influence of matrix effect on the performance of the method and to investigate the ability of different chemometric tools to overcome matrix effect issues. Experiments were performed on bluefin tuna (Thunnus thynnus) and bonito (Sarda sarda) samples exposed to varying levels of microbial activity. Spectral analysis confirmed the significant effect of sample matrix, related to different fish species, as well as the extent of microbial activity on the predictive ability of PLSR models with R2 of best model ranging from 0.722–0.945. Models obtained by ANN processing of factors derived by PCA from the raw spectra of the samples showed excellent prediction of histamine, regardless of fish species and extent of microbial activity (R2 of validation > 0.99).
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Mao Y, Zhang Y, Hu W, Ye W. Carbon Dots-Modified Nanoporous Membrane and Fe 3O 4@Au Magnet Nanocomposites-Based FRET Assay for Ultrasensitive Histamine Detection. Molecules 2019; 24:molecules24173039. [PMID: 31443342 PMCID: PMC6749273 DOI: 10.3390/molecules24173039] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Revised: 08/19/2019] [Accepted: 08/20/2019] [Indexed: 11/16/2022] Open
Abstract
Histamine can be formed by enzymatic decarbonylation of histidine, which is an important indicator of seafood quality. A rapid and sensitive assay method is necessary for histamine monitoring. A fluorescence resonance energy transfer (FRET) assay system based on a carbon dot (CD)-modified nanoporous alumina membrane and Fe3O4@Au magnet nanocomposites has been developed for histamine detection in mackerel fish. CDs immobilized on nanoporous alumina membranes were used as donors, which provided a fluorescence sensing substrate for histamine detection. Fe3O4@Au magnet nanocomposites can not only act as acceptors, but also concentrate histamine from fish samples to increase detection sensitivity. Histamine was detected by the fluorescence signal changes of CDs capturing histamine by an immune reaction. The fluorescence signals of CDs were quenched by Fe3O4@Au magnet nanocomposites via the FRET mechanism. With an increase of histamine, the fluorescence intensity decreased. By recording fluorescence spectra and calculating intensity change, histamine concentration can be determined with a limit of detection (LOD) of 70 pM. This assay system can be successfully applied for histamine determination in mackerel fish to monitor the fish spoilage process in different storage conditions. It shows the potential applications of CDs-modified nanoporous alumina membranes and Fe3O4@Au magnet nanocomposites-based biosensors in the food safety area.
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Affiliation(s)
- Yijie Mao
- Institute of Ocean Research, Zhejiang University of Technology, Hangzhou 310014, China
- Department of Food Science and Technology, Zhejiang University of Technology, Hangzhou 310014, China
| | - Yu Zhang
- Institute of Ocean Research, Zhejiang University of Technology, Hangzhou 310014, China
- Department of Food Science and Technology, Zhejiang University of Technology, Hangzhou 310014, China
| | - Wei Hu
- Institute of Ocean Research, Zhejiang University of Technology, Hangzhou 310014, China
- Department of Food Science and Technology, Zhejiang University of Technology, Hangzhou 310014, China
| | - Weiwei Ye
- Institute of Ocean Research, Zhejiang University of Technology, Hangzhou 310014, China.
- Department of Food Science and Technology, Zhejiang University of Technology, Hangzhou 310014, China.
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Yadav T, Mukherjee V. Conformational study of octopamine in gas phase and effect of hydrochloride. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 206:263-277. [PMID: 30121472 DOI: 10.1016/j.saa.2018.08.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Revised: 07/18/2018] [Accepted: 08/09/2018] [Indexed: 06/08/2023]
Abstract
This work deals with the molecular modeling and vibrational spectra of all the twenty conformers of an important biomolecule octopamine which have been investigated using the DFT/B3LYP level of theory in combination with the 6-31++g(d,p) as a suitable basis set. The experimental FTIR and FTRaman spectra of octopamine neurotransmitter were recorded in the spectral region 400-4000 cm-1 and 50-4000 cm-1 respectively and correlated with the calculated spectra of the most stable conformer. The effect of hydrochloride on the important geometrical parameters of most stable conformer of octopamine was also studied. The normal coordinate analysis was performed to scale the theoretical frequencies and to calculate potential energy distributions for precise normal mode assignment. Most of the frequencies were in good agreement with experimental one. However, some have been modified. Natural bond orbital analysis was performed in order to confirm the stability of electronic structure of octopamine molecule. HOMO-LUMO analysis for all the twenty conformers was also performed to give the transition profile and to study the chemical reactivity of octopamine.
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Affiliation(s)
- T Yadav
- SUIIT, Sambalpur University, Odisha, India.
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Yadav T, Mukherjee V. Structural confirmation and spectroscopic study of a biomolecule: Norepinephrine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 202:222-237. [PMID: 29793144 DOI: 10.1016/j.saa.2018.05.040] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Revised: 04/25/2018] [Accepted: 05/09/2018] [Indexed: 06/08/2023]
Abstract
The present work deals with the conformational and vibrational spectroscopic study of an important bio-molecule named norepinephrine in gas phase. The FTIR and FTRaman spectrum of norepinephrine in amorphous form were recorded in wavenumber range 4000-400 cm-1 and 4000-50 cm-1 respectively. We have investigated twenty-seven stable conformational structures of norepinephrine molecule. All the calculations have been done using Density Functional Theory with exchange functional B3LYP incorporated with the 6-31++G(d, p) basis set. The effect of hydrochloride on different bond lengths, bond angles and dihedral angles in the most stable conformer has also been studied. The total potential energy distribution for both the most stable conformer and the most stable conformer in hydrochloride was performed with the help Normal coordinate analysis method. Most of the calculated vibrational frequencies are in good agreement with the experimental frequencies. The natural bond orbital analysis was also performed to ensure the stability of electronic structures of norepinephrine. To know chemical reactivity of norepinephrine molecule we have calculated the energy gap between HOMO and LUMO orbitals and it has found above 5 eV in all the conformers.
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Affiliation(s)
- T Yadav
- SUIIT, Sambalpur University, Odisha, India
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Yadav T, Mukherjee V. Interpretation of IR and Raman spectra of dopamine neurotransmitter and effect of hydrogen bond in HCl. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.01.066] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Structural modeling and spectroscopic investigation of isolated and hydrochloride tyramine neurotransmitter. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.06.140] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Mukherjee V, Yadav T. Spectroscopic investigation of some building blocks of organic conductors: A comparative study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 176:18-29. [PMID: 28063308 DOI: 10.1016/j.saa.2016.12.037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2016] [Revised: 12/20/2016] [Accepted: 12/20/2016] [Indexed: 06/06/2023]
Abstract
Theoretical molecular structures and IR and Raman spectra of di and tetra methyl substituted tetrathiafulvalene and tetraselenafulvalene molecules have been studied. These molecules belong to the organic conductor family and are immensely used as building blocks of several organic conducting devices. The Hartree-Fock and density functional theory with exchange functional B3LYP have been employed for computational purpose. We have also performed normal coordinate analysis to scale the theoretical frequencies and to calculate potential energy distributions for the conspicuous assignments. The exciting frequency and temperature dependent Raman spectra have also presented. Optimization results reveal that the sulphur derivatives possess boat shape while selenium derivatives possess planner structures. Natural bond orbitals analysis has also been performed to study second order interaction between donors and acceptors and to compute molecular orbital occupancy and energy.
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Affiliation(s)
- V Mukherjee
- SUIIT, Sambalpur University, Sambalpur 768019, Odisha, India.
| | - T Yadav
- SUIIT, Sambalpur University, Sambalpur 768019, Odisha, India
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