3,4-Dimethylpyrazole phosphate and 2-(N-3,4-dimethyl-1H-pyrazol-1-yl) succinic acid isomeric mixture nitrification inhibitors: Quantification in plant tissues and toxicity assays

Biological Nitrification Inhibitors with Antagonistic and Synergistic Effects on Growth of Ammonia Oxidisers and Soil Nitrification

Biological nitrification inhibition (BNI) refers to the plant-mediated process in which nitrification is inhibited through rhizospheric release of diverse metabolites. While it has been assumed that interactive effects of these metabolites shape rhizosphere processes, including BNI, there is scant evidence supporting this claim. Hence, it was a primary objective to assess the interactive effects of selected metabolites, including caffeic acid (CA), vanillic acid (VA), vanillin (VAN), syringic acid (SA), and phenylalanine (PHE), applied as single and combined compounds, against pure cultures of various ammonia-oxidising bacteria (AOB, Nitrosomonas europaea, Nitrosospira multiformis, Nitrosospira tenuis, Nitrosospira briensis) and archaea (AOA, Nitrososphaera viennensis), as well as soil nitrification. Additionally, benzoic acid (BA) was examined as a novel biological nitrification inhibitor. All metabolites, except SA, tested as single compounds, achieved varied levels of inhibition of microbial growth, with CA exhibiting the highest inhibitory potential. Similarly, all metabolites applied as single compounds, except PHE, inhibited soil nitrification by up to 62%, with BA being the most potent. Inhibition of tested nitrifying microbes was also observed when compounds were assessed in combination. The combinations VA + PH, VA + CA, and VA + VAN exhibited synergism against N. tenuis and N. briensis, while others showed antagonism against N. europaea, N. multiformis, and N. viennensis. Although all combinations suppressed soil nitrification, their interactions against soil nitrification revealed antagonism. Our findings indicate that both antagonism and synergism are possible in rhizospheric interactions involving BNI metabolites, resulting in growth inhibition of nitrifiers and suppression of soil nitrification.

Biodegradation of pesticide in agricultural soil employing entomopathogenic fungi: Current state of the art and future perspectives

Pesticides play a pivotal role in agriculture for the effective production of various crops. The indiscriminate use of pesticides results in the significant bioaccumulation of pesticide residues in vegetables. This situation is beyond the control of consumers and poses a serious health issue for human beings. Occupational exposure to pesticides may occur for farmers, agricultural workers, and industrial producers of pesticides. This occupational exposure primarily causes food and water contamination that gets into humans and environmental pollution. Depending on the toxicity of pesticides, the causes and effects differ in the environment and in human health. The number of criteria used and the method of implementation employed to assess the effect of pesticides on humans and the environment have been increasing, as they may provide characterization of pesticides that are already on the market as well as those that are on the way. The biological control of pests has been increasing nowadays to combat all these effects caused by synthetic pesticides. Myco-biocontrol has received great attention in research because it has no negative impact on humans, the environment, or non-target species. Entomopathogenic fungi are microbes that have the ability to kill insect pests. Fungi also make enzymes like the lytic enzymes, esterase, oxidoreductase, and cytochrome P450, which react with chemical residues in the field and break them down into nontoxic substances. In this review, the authors looked at how entomopathogenic fungi break down insecticides in the environment and how their enzymes break down insecticides on farms.

Microplastics have rice cultivar-dependent impacts on grain yield and quality, and nitrogenous gas losses from paddy, but not on soil properties

Microplastics might affect the nitrogen (N)-use efficiency, crop production, and reactive N losses in agricultural system. However, it remains unclear whether the effects are dependent on crop cultivar. Here, a pot experiment was conducted to evaluate the effects of a typical polyethylene (PE) microplastics addition on grain yield and amino acid content, N-use efficiency, ammonia (NH₃) volatilization and nitrous oxide (N₂O) emission, and properties of paddy soil planted with common rice Nangeng 5055 (NG) and hybrid rice Jiafengyou 6 (JFY). The results showed that PE addition significantly reduced the grain yield and total grain amino acid content of hybrid rice by 23% and 1.7%, respectively. In addition, PE addition significantly decreased the N agronomic and recovery efficiencies of hybrid rice by 30% and 27%, respectively. For paddy soil in which hybrid rice was grown, PE addition significantly increased NH₃ volatilization by 72%, but exerted no influence on N₂O emission. Interestingly, the N₂O emission from NG+PE treatment was 15% significantly lower than that from NG treatment, which was associated with decreased gene copies of nirK (by 50%) and nirS (by 84%) in NG+PE treatment. Generally, no significant change in soil properties was found as result of microplastics addition regardless of the cultivar. In conclusion, the impacts of microplastics on rice production and quality, N-use efficiency and nitrogenous gas losses from paddy soil are cultivar-dependent.

Metatranscriptome Revealed the Efficacy and Safety of a Prospective Approach for Agricultural Wastewater Reuse: Achieving Ammonia Retention during Biological Treatment by a Novel Natural Inhibitor Epsilon-Poly-l-Lysine

Appropriate inhibitors might play important roles in achieving ammonia retention in biological wastewater treatment and its reuse in agriculture. In this study, the feasibility of epsilon-poly-l-lysine (ε-PL) as a novel natural ammonia oxidation inhibitor was investigated. Significant inhibition (ammonia oxidation inhibition rate was up to 96.83%) was achieved by treating the sludge with ε-PL (400 mg/L, 12 h soaking) only once and maintaining for six cycles. Meanwhile, the organic matter and nitrite removal was not affected. This method was effective under the common environmental conditions of biological wastewater treatment. Metatranscriptome uncovered the possible action mechanisms of ε-PL. The ammonia oxidation inhibition was due to the co-decrease of Nitrosomonas abundance, ammonia oxidation genes, and the cellular responses of Nitrosomonas. Thauera and Dechloromonas could adapt to ε-PL by stimulating stress responses, which maintained the organic matter and nitrite removal. Importantly, ε-PL did not cause the enhancement of antibiotic resistance genes and virulent factors. Therefore, ε-PL showed a great potential of ammonia retention, which could be applied in the biological treatment of wastewater for agricultural reuse.

Factors Influencing Soil Nitrification Process and the Effect on Environment and Health

To meet the global demand for food, several factors have been deployed by agriculturists to supply plants with nitrogen. These factors have been observed to influence the soil nitrification process. Understanding the aftermath effect on the environment and health would provoke efficient management. We review literature on these factors, their aftermath effect on the environment and suggest strategies for better management. Synthetic fertilizers and chemical nitrification inhibitors are the most emphasized factors that influence the nitrification process. The process ceases when pH is <5.0. The range of temperature suitable for the proliferation of ammonia oxidizing archaea is within 30 to 37oC while that of ammonia oxidizing bacteria is within 16 to 23oC. Some of the influencing factors excessively speed up the rate of the nitrification process. This leads to excess production of nitrate, accumulation of nitrite as a result of decoupling between nitritation process and nitratation process. The inhibition mechanism of chemical nitrification inhibitors either causes a reduction in the nitrifying micro-organisms or impedes the amoA gene's function. The effects on the environment are soil acidification, global warming, and eutrophication. Some of the health effects attributed to the influence are methemoglobinemia, neurotoxicity, phytotoxicity and cancer. Biomagnification of the chemicals along the food chain is also a major concern. The use of well-researched and scientifically formulated organic fertilizers consisting of microbial inoculum, well-treated organic manure and good soil conditioner are eco-friendly. They are encouraged to be used to efficiently manage the process. Urban agriculture could promote food production, but environmental sustainability should be ensured.

Management and implications of using nitrification inhibitors to reduce nitrous oxide emissions from urine patches on grazed pasture soils - A review

Livestock urine patches are the main source of nitrous oxide (N₂O) emissions in pastoral system, and nitrification inhibitors (NIs) have been widely investigated as a N₂O mitigation strategy. This study reviews the current understanding of the effect of NIs use on N₂O emissions from urine patches, including the factors that affect their efficacy, as well as the unintended consequences of NIs use. It brings together the fundamental aspects of targeted management of urine patches for reducing N₂O emissions involving inhibitors. The available literature of 196 datasets indicates that dicyandiamide (DCD), 3,4-dimethylpyrazole phosphate (DMPP), and 2-chloro-6-(trichloromethyl) pyridine (nitrapyrin) reduced N₂O emissions from urine patches by 44 ± 2%, 28 ± 38% and 28 ± 5%, (average ± s.e.), respectively. DCD also increased pasture dry matter and nitrogen (N) uptake by 13 ± 2% and 15 ± 3%, (average ± s.e.), respectively. The effect of DMPP and nitrapyrin on pasture dry matter and N uptake, assessed in only one study, was not significant. It also suggests that harmonizing the timing of inhibitor use with urine-N transformation increase the efficacy of NIs. No negative impacts on non-targeted soil and aquatic organisms have been reported with the recommended rate of DCD applied to urine and recommended applications of DMPP and nitrapyrin for treated mineral fertilisers and manures. However, there was evidence of the presence of small amounts of DCD residues in milk products as a result of its use on livestock grazed pasture. DMPP and nitrapyrin can also enter the food chain via grazing livestock. The study concludes that for the use of NIs in livestock grazed systems, research is needed to establish acceptable maximum residue level (MRL) of NIs in soil, plant, and animal products, and develop technologies that optimise physical mixing between NIs and urine patches.

Biogas slurry application could potentially reduce N2O emissions and increase crop yield

The huge excrement quantity from the increasing large-scale livestock stressed the ecological, environmental deterioration. As a major benefit for handling livestock manure, the slurry of biogas (BS) is developed during the production of biogas that might increase plant productivity. However, nitrous oxide (N₂O) emissions from BS are considered a significant danger to the environment due to global warming potential. Furthermore, applying different proportions of BS combined with chemical fertilizer (CF) on N₂O productions in the North China Plain (NCP) remains unclear. Herein, two sequential field trials were performed by maize-wheat rotations to substitute the CF by BS and reduce N₂O emissions while keeping the crop yield stable. Four treatments were conducted, including T1, T3, T6, and CK. A total of 226.5 kg N ha^-1 used in the maize-wheat rotation system. Additionally, different ratios of BS (100%, 80%, and 50%) combined with CF were used in wheat season in the tillering stage. Results showed integrated applications of BS with CF have potential for reducing N₂O emission. Our findings showed that the maximum grain yield of CF was 6250 kg ha^-1, which might be achieved by applying 38% BS and 62% of CF. This ratio yielded 1.03 kg ha^-1 N₂O emissions, which was 15% lesser than the N₂O emission of CK, 1.21 kg ha^-1. Considering whole growing period of wheat biogas treatments significantly reduced the cumulative N₂O emissions from 17% to 26% compared to CF. To achieve maximum yield and minimum N₂O emissions, an optimum 38% BS ratio has been suggested. The integrated use of BS and CF provided the greatest grain yield because of necessary nutrients provided by both slurry and CF. Consequently, N₂O emissions reduced based on frequency and type of fertilizer. In conclusion, 38% ratio of BS combined with 62% CF would be a suitable approach to mitigate N₂O emission and simultaneously increase crop yield in NCP.

Effect of biofertilizer and wheat straw biochar application on nitrous oxide emission and ammonia volatilization from paddy soil

Biofertilizer can improve soil quality, especially the microbiome composition, which potentially affect soil nitrogen (N) cycling. However, little is known about the responses of nitrous oxide (N₂O) emission and ammonia (NH₃) volatilization from biochar-amended paddy soil to the biofertilizer application. Therefore, we conducted a soil column experiment using four 240 kg N ha^-1 (equivalent to 1.7 g N pot^-1) treatments consisting of biofertilizer (3 t ha^-1, equivalent to 21.2 g pot^-1), biochar (7.5 t ha^-1, equivalent to 63.6 g pot^-1), and a mixture of biofertilizer and biochar at the same rate and a control (CK). The results showed that the N₂O emissions and NH₃ volatilizations were equivalent to 0.15-0.28% and 18.0-31.5% of rice seasonal N applied to the four treatments, respectively. Two treatments with biofertilizer and biochar individual amendment significantly increased (P < 0.05) the N₂O emissions to same degree by 30.2%, while co-application of biochar and biofertilizer further increased the N₂O emission by 74.4% compared to the control. The higher N₂O emission was likely attributed to the increased gene copies of AOA, nirK, and nirS. Applying biofertilizer significantly increased (P < 0.05) NH₃ volatilization by 24.7% relative to the control, while applying biochar had no influence on NH₃ volatilization. Co-application of biofertilizer and biochar significantly decreased (P < 0.05) NH₃ volatilization by 12.3% compared to the control. Overall, the net global warming potential based on NH₃ and N₂O in current study increased by 13.0-26.0% in both the individual- and co-application of biofertilizer and biochar. Interestingly, both individual- and co-applications of biofertilizer and biochar increased the rice grain yield by 16.5-38.3%. Therefore, applications of biofertilizer and biochar did not increase the GHGI. Particularly, the co-applying of them significantly lowered (P < 0.05) the GHGI by 15.2%. In conclusion, biofertilizer and biochar should be co-applied to achieve the goals of environment protection and food security.

Insights into the effects of heavy metal pressure driven by long-term treated wastewater irrigation on bacterial communities and nitrogen-transforming genes along vertical soil profiles

Irrigation with treated wastewater (TWW) influences soil ecological function due to the accumulation of heavy metals (HMs) and nutrients in soils. However, the interaction between HMs and microbial processes in TWW-irrigated soil has not been fully explored. We investigated the effect of HMs on bacterial communities and nitrogen-transforming (N-transforming) genes along vertical soil profiles irrigated with domestic TWW (DTWW) and industrial TWW (ITWW) for more than 30 years. Results indicate that long-term TWW irrigation reshaped bacterial community structure and composition. Irrigation with ITWW led to increased accumulation of Cd, Cr, Cu, Pb, Zn, and Ni in soils than DTWW. Accumulation of inorganic N, soil organic carbon, and HMs in topsoil irrigated with ITWW contributed to the activities of Micrococcaceae. The effect of the activation of nutrient factors on Bacillus, which was the dominant species in DTWW-irrigated soils, was greater than that of HMs. HM pressure driven by ITWW irrigation changed the vertical distribution of N-transforming functional genes, increasing the abundance of amoA gene and decreasing that of nifH through soil depth. ITWW irrigation enhanced the denitrification capacity in topsoil; ammonia-oxidizing capacity in deeper soil was increased after long-term irrigation with DTWW and ITWW, suggesting a potential risk of nitrogen loss.

Urease and Nitrification Inhibitors—As Mitigation Tools for Greenhouse Gas Emissions in Sustainable Dairy Systems: A Review

Currently, nitrogen fertilizers are utilized to meet 48% of the total global food demand. The demand for nitrogen fertilizers is expected to grow as global populations continue to rise. The use of nitrogen fertilizers is associated with many negative environmental impacts and is a key source of greenhouse and harmful gas emissions. In recent years, urease and nitrification inhibitors have emerged as mitigation tools that are presently utilized in agriculture to prevent nitrogen losses and reduce greenhouse and harmful gas emissions that are associated with the use of nitrogen-based fertilizers. Both classes of inhibitor work by different mechanisms and have different physiochemical properties. Consequently, each class must be evaluated on its own merits. Although there are many benefits associated with the use of these inhibitors, little is known about their potential to enter the food chain, an event that may pose challenges to food safety. This phenomenon was highlighted when the nitrification inhibitor dicyandiamide was found as a residual contaminant in milk products in 2013. This comprehensive review aims to discuss the uses of inhibitor technologies in agriculture and their possible impacts on dairy product safety and quality, highlighting areas of concern with regards to the introduction of these inhibitor technologies into the dairy supply chain. Furthermore, this review discusses the benefits and challenges of inhibitor usage with a focus on EU regulations, as well as associated health concerns, chemical behavior, and analytical detection methods for these compounds within milk and environmental matrices.

Effects of combined biochar and organic fertilizer on nitrous oxide fluxes and the related nitrifier and denitrifier communities in a saline-alkali soil

This study intended to evaluate the combined effects of both biochar and organic fertilizer on nitrous oxide (N₂O) fluxes and composition of nitrifier and denitrifier of saline-alkali soil. Therefore, four different treatments such as CK (only chemical fertilizer), B (only biochar), M (only organic fertilizer), BM (B:M = 1:1) were used in this experiment. The results showed that N₂O emissions were decreased in B and BM treatments compare to the control. In contrast, N₂O emissions were highest before day 12 but lowest after day 19 in M treatment compare to the control. Application of biochar, organic fertilizer and biochar plus organic fertilizer decreased the nirS and nirK genes copies and enhanced the nosZ gene copies which resulting in the lower N₂O fluxes. The ammonia-oxidizing bacteria (AOB) amoA and nirK genes copies were significantly increased by organic fertilizer before day 12, leading to high N₂O emissions. The genera Nitrosospira (AOB) and Nitrososphaera (ammonia-oxidizing archaea, AOA) assumed absolute superiority. Additionally, Nitrosospira (AOB) was also appeared in nirK-type denitrifiers, illustrating denitrification was carried out by nitrifiers. The genera Azospirillum (nirS), Burkholderia (nosZ) and Polymorphum (nosZ) were dominant in CK. There was only one dominant genus, Mesorhizobium (nosZ) in the B treatment. The genera Mesorhizobium (nirK), Azoarcus (nirS), Kocuria (nirS) and Pseudomonas (nosZ) occupied the main status in the M treatment. The relative abundance of Rhodanobacter (nirS) and Azospirillum (nosZ) were higher in the BM treatment compared with other treatments. Soil water content (SWC), pH, NH₄⁺-N and NO₃^--N were the main factors affecting AOB and denitrifiers, which influencing N₂O emissions. Overall, combined application of biochar and organic fertilizer can reduce the N₂O emission where AOB and nirK-type denitrifier were the main contributors to the N₂O emission.

The Nitrification Inhibitor Vizura® Reduces N2O Emissions When Added to Digestate before Injection under Irrigated Maize in the Po Valley (Northern Italy)

The agricultural area in the Po Valley is prone to high nitrous oxide (N2O) emissions as it is characterized by irrigated maize-based cropping systems, high amounts of nitrogen supplied, and elevated air temperature in summer. Here, two monitoring campaigns were carried out in maize fertilized with raw digestate in a randomized block design in 2016 and 2017 to test the effectiveness of the 3, 4 DMPP inhibitor Vizura® on reducing N2O-N emissions. Digestate was injected into 0.15 m soil depth at side-dressing (2016) and before sowing (2017). Non-steady state chambers were used to collect N2O-N air samples under zero N fertilization (N0), digestate (D), and digestate + Vizura® (V). Overall, emissions were significantly higher in the D treatment than in the V treatment in both 2016 and 2017. The emission factor (EF, %) of V was two and four times lower than the EF in D in 2016 and 2017, respectively. Peaks of NO3-N generally resulted in N2O-N emissions peaks, especially during rainfall or irrigation events. The water-filled pore space (WFPS, %) did not differ between treatments and was generally below 60%, suggesting that N2O-N emissions were mainly due to nitrification rather than denitrification.

A framework for analysing nitrification inhibition: A case study on 3,4-dimethylpyrazole phosphate (DMPP)

Nitrification inhibitors show great potential to reduce nitrogen losses from agricultural systems and to improve nitrogen use efficiency. The most recently developed nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) is gaining popularity due to its benefits relative to other compounds. However, the behaviour of DMPP and its effect on nitrification in soils has been characterised using inconsistent and confusing terminology. Many studies have used the term half-life to describe the persistence of DMPP but used different experimental methods to derive it leading to highly variable results. We assessed how different methodologies in experiments may have contributed to the variability in the results using a framework that describes the behaviour of DMPP and its effect on nitrification in terms of: persistence, bioactivity and longevity. We show that deriving the persistence of DMPP using ¹⁴C labelling techniques is challenging because it requires consideration of other ¹⁴C pools in the soil. We also describe the limitations of soil inorganic nitrogen measurements to characterise the bioactivity and longevity of the inhibitory effect on nitrification. We conclude by proposing experiments that can facilitate the evaluation of the benefits of DMPP across broader scales. While this study focused on DMPP, the concepts presented here are equally relevant to other nitrification inhibitors.

Multi-omic and physiologic approach to understand Lotus japonicus response upon exposure to 3,4 dimethylpyrazole phosphate nitrification inhibitor

Nitrogen fertilization is a major force in global greenhouse gases emissions and causes environmental contamination through nitrate leaching. The use of nitrification inhibitors has been proven successful to mitigate these effects. However, there is an increasing concern about the undesired effects that their potential persistence in the soil or accumulation in plants may provoke. In this study, we first exposed Lotus japonicus plants to high amounts of 3,4 dimethylpyrazole phosphate (DMPP) and 2-(N-3,4-dimethyl-1H-pyrazol-1-yl) succinic acid isomeric mixture (DMPSA) nitrification inhibitors. Exposure to doses higher than 1 mg·L^-1 provoked DMPP accumulation mostly in the aerial part, while DMPSA was only detected from 10 mg·L^-1 and nearly no translocation. To evaluate the effect that DMPP accumulation in leaves may provoke on plant performance we combined a transcriptome, proteome, and physiological analysis in plants treated with 10 mg/ L of DMPP. This treatment provoked changes in the expression of 229 genes and 59 proteins. Overall, we evidence that when DMPP accumulates in leaves it induces stress responses, notably provoking changes in cell redox balance, hormone signaling, protein synthesis and turnover and carbon and nitrogen metabolism.