Multiple stressor effects on biodiversity and ecosystem functioning in a Mediterranean temporary river

Improving the performance of macroinvertebrate based multi-metric indices by incorporating functional traits and an index performance-driven approach

Human-driven multiple pressures impact freshwater ecosystems worldwide, reducing biodiversity, and impacting ecosystem functioning and services provided to human societies. Multi-metric indices (MMIs) are suitable tools for tracking the effects of anthropogenic pressures on freshwater ecosystems because they incorporate various biological metrics responding to multiple pressures at different levels of biological organization. However, the performance and applicability of MMIs depend on their metrics' selection and their calibration against natural environmental gradients. In this study, we aimed to unravel i) how incorporating functional trait-based metrics affects the performance of MMIs, ii) how disentangling the natural environmental gradients from anthropogenic pressures effects affects the performance of MMIs, and iii) how the performance of MMIs developed using a metric performance-driven approach compares with MMIs developed using an index performance-driven approach. We carried out a field survey measuring abiotic and biotic variables at 53 sites in the Karun River basin (Iran) in 2018. For functional trait-based metrics, we used 15 macroinvertebrate traits and calculated community-weighted mean trait values and functional diversity indices. We used random forest modeling to account for the effect of natural environmental gradients on each metric. Based on our results, incorporating functional traits increased the MMI performance significantly and facilitated ecological interpretation of MMIs. Both taxonomic and functional components of macroinvertebrate assemblages co-varied strongly with natural environmental gradients, and accounting for these covariations improved the performance of MMIs. Finally, we found that index performance-driven MMIs performed better in terms of precision, bias, sensitivity, and responsiveness than metric performance-driven MMIs.

Microbial community structure and diversity attached to the periphyton in different urban aquatic habitats

Periphyton is a complex community composed of diverse prokaryotes and eukaryotes; understanding the characteristics of microbial communities within periphyton becomes crucial for biogeochemical cycles and energy dynamics of aquatic ecosystems. To further elucidate the community characteristics of periphyton across varied aquatic habitats, including unpolluted ecologically restored lakes, aquaculture ponds, and areas adjacent to domestic and industrial wastewater treatment plant outfalls, we explored the composition and diversity of prokaryotic and eukaryotic communities in periphyton by employing Illumina MiSeq sequencing. Our findings indicated that the prokaryotic communities were predominantly composed of Proteobacteria (40.92%), Bacteroidota (21.01%), and Cyanobacteria (10.12%), whereas the eukaryotic communities were primarily characterized by the dominance of Bacillariophyta (24.09%), Chlorophyta (20.83%), and Annelida (15.31%). Notably, Flavobacterium emerged as a widely distributed genus among the prokaryotic community. Unclassified_Tobrilidae exhibited higher abundance in unpolluted ecologically restored lakes. Chaetogaster and Nais were enriched in aquaculture ponds and domestic wastewater treatment plant outfall area, respectively, while Surirella and Gomphonema dominated industrial sewage treatment plant outfall area. The alpha diversity of eukaryotes was higher in unpolluted ecologically restored lakes. pH and nitrogen content (NO 2 - - N ,NO 3 - - N , and TN) significantly explained the variations for prokaryotic and eukaryotic community structures, respectively. Eukaryotic communities exhibited a more pronounced response to habitat variations compared to prokaryotic communities. Moreover, the association networks revealed an intensive positive correlation between dominant Bacillariophyta and Bacteroidota. This study provided useful data for identifying keystone species and understanding their ecological functions.

River ecological status is shaped by agricultural land use intensity across Europe

Agriculture impacts the ecological status of freshwaters through multiple pressures such as diffuse pollution, water abstraction, and hydromorphological alteration, strongly impairing riverine biodiversity. The agricultural effects, however, likely differ between agricultural types and practices. In Europe, agricultural types show distinct spatial patterns related to intensity, biophysical conditions, and socioeconomic history, which have been operationalised by various landscape typologies. Our study aimed at analysing whether incorporating agricultural intensity enhances the correlation between agricultural land use and the ecological status. For this, we aggregated the continent's agricultural activities into 20 Areas of Farming-induced Freshwater Pressures (AFFP), specifying individual pressure profiles regarding nutrient enrichment, pesticides, water abstraction, and agricultural land use in the riparian zone to establish an agricultural intensity index and related this intensity index to the river ecological status. Using the agricultural intensity index, nearly doubled the correlative strength between agriculture and the ecological status of rivers as compared to the share of agriculture in the sub-catchment (based on the analysis of more than 50,000 sub-catchment units). Strongest agricultural pressures were found for high intensity cropland in the Mediterranean and Temperate regions, while extensive grassland, fallow farmland and livestock farming in the Northern and Highland regions, as well as low intensity mosaic farming, featured lowest pressures. The results provide advice for pan-European management of freshwater ecosystems and highlight the urgent need for more sustainable agriculture. Consequently, they can also be used as a basis for European Union-wide and global policies to halt biodiversity decline, such as the post-2027 renewal of the Common Agricultural Policy.

Hypoxia and salinity constrain the sediment microbiota-mediated N removal potential in an estuary: A multi-trophic interrelationship perspective

Reactive nitrogen (N) enrichment is a common environmental problem in estuarine ecosystems, while the microbial-mediated N removal process is complicated for other multi-environmental factors. Therefore, A systematic investigation is necessary to understand the multi-trophic microbiota-mediated N removal characteristics under various environmental factors in estuaries. Here, we studied how multiple factors affect the multi-trophic microbiota-mediated N removal potential (denitrification and anammox) and N2O emission along a river-estuary-bay continuum in southeastern China using the environmental DNA (eDNA) approach. Results suggested that hypoxia and salinity were the dominant environmental factors affecting multi-trophic microbiota-mediated N removal in the estuary. The synergistic effect of hypoxia and salinity contributed to the loss of taxonomic (MultiTaxa) and phylogenetic (MultiPhyl) diversity across multi-trophic microbiota and enhanced the interdependence among multi-trophic microbiota in the estuary. The N removal potential calculated as the activities of key N removal enzymes was also significantly constrained in the estuary (0.011), compared with the river (0.257) and bay (0.461). Structural equation modeling illustrated that metazoans were central to all sediment N removal potential regulatory pathways. The top-down forces (predation by metazoans) restrained the growth of heterotrophic bacteria, which may affect microbial N removal processes in the sediment. Furthermore, we found that the hypoxia and salinity exacerbated the N2O emission in the estuary. This study clarifies that hypoxia and salinity constrain estuarine multi-trophic microbiota-mediated N removal potential and highlights the important role of multi-trophic interactions in estuarine N removal, providing a new perspective on mitigating estuarine N accumulation.

Towards the fate of antibiotics and the development of related resistance genes in stream biofilms

Antibiotics are ubiquitously found in natural surface waters and cause great harm to aquatic organisms. Stream biofilm is a complex and active community composed of algae, bacteria, fungi and other microorganisms, which mainly adheres to solid substances such as rocks and sediments. The durability and diverse structural and metabolic characteristics of biofilms make them a representative of microbial life in aquatic micrecosystems and can reflect major ecosystem processes. Microorganisms and extracellular polymeric substances in biofilms can adsorb and actively accumulate antibiotics. Therefore, biofilms are excellent biological indicators for detecting antibiotic in polluted aquatic environments, but the biotransformation potential of stream biofilms for antibiotics has not been fully explored in the aquatic environment. The characteristics of stream biofilm, such as high abundance and activity of bacterial community, wide contact area with pollutants, etc., which increases the opportunity of biotransformation of antibiotics in biofilm and contribute to bioremediation to improve ecosystem health. Recent studies have demonstrated that both exposure to high and sub-minimum inhibitory concentrations of antibiotics may drive the development of antibiotic resistance genes (ARGs) in natural stream biofilms, which are susceptible to the effects of antibiotic residues, microbial communities and mobile genetic elements, etc. On the basis of peer-reviewed papers, this review explores the distribution behavior of antibiotics in stream biofilms and the contribution of biofilms to the acquisition and spread of antibiotic resistance. Considering that antibiotics and ARGs alter the structure and ecological functions of natural microbial communities and pose a threat to river organisms and human health, our research findings provide comprehensive insights into the migration, transformation, and bioavailability of antibiotics in biofilms.

Ecological structure of aquatic macroinvertebrate communities in the Hauts Plateaux of Northeast Algeria

Aquatic macroinvertebrates are integral parts of functioning wetlands, inhabiting a diversity of aquatic ecosystems where communities are spatially structured. Macroinvertebrates of some Mediterranean regions such as North Africa are still not well studied. Here, we study the community structure of benthic macroinvertebrates in four different types of lotic and lentic wetlands in the semiarid Haut Plateaux of Northeast Algeria. Macroinvertebrates and 06 physicochemical parameters were sampled in 12 sites belonging to four types of habitats (lotic river, lentic river, dams, and sebkha [saline lentic water body]) during January-December 2021. Eventually, the character lentic-lotic was the most important variable affecting the affecting invertebrate communities in the Mediterranean region. The results revealed that sebkha and dams had a lower Shannon index than lentic and lotic rivers. Non-metric multidimensional scaling analysis showed a strong overlap between the community composition in lotic and lentic sites . Howeverin the three types of aquatic groups lentic river, dam and lotic habitats showed a strong overlap between the community whereas sebkha was markedly separated. Redundancy analysis showed that water velocity and pH, were the main drivers of community structure of macroinvertebrates, revealed a strong effect with pH (F1,8=4.15, P = 0.001) and water velocity (F1,8= 3.22, P = 0.002) , separating lotic communities from those that inhabited dams, lentic rivers, and sebkhas. As conclusion, this study contributes to the better understanding of the community structure of macroinvertebrates in semiarid North Africa where wetlands have been experiencing high anthropogenic disturbance.

Shotgun Metagenomic Analyses of Microbial Assemblages in the Aquatic Ecosystem of Winam Gulf of Lake Victoria, Kenya Reveals Multiclass Pollution

Lake Victoria, the second-largest freshwater lake in the world, provides an important source of food and income, particularly fish for both domestic consumption and for export market. In recent years, Lake Victoria has suffered massive pollution from both industrial and wastewater discharge. Microplastic biomes, pharmaceutical residues, drugs of abuse, heavy metals, agrochemicals, and personal care products are ubiquitous in the aquatic ecosystem of Winam Gulf. These pollutants are known to alter microbial assemblages in aquatic ecosystems with far-reaching ramification including a calamitous consequence to human health. Indeed, some of these pollutants have been associated with human cancers and antimicrobial resistance. There is a paucity of data on the microbial profiles of this important but heavily polluted aquatic ecosystem. The current study sought to investigate the metagenomic profiles of microbial assemblages in the Winam Gulf ecosystem. Water and sediment samples were collected from several locations within the study sites. Total genomic DNA pooled from all sampling sites was extracted and analyzed by whole-genome shotgun sequencing. Analyses revealed three major kingdoms: bacteria, archaea and eukaryotes belonging to 3 phyla, 13 classes, 14 families, 9 orders, 14 genera, and 10 species. Proteobacteria, Betaproteobacteria, Comamonadaceae, Burkholdariales, and Arcobacter were the dominated phyla, class, family, order, genera, and species, respectively. The Kyoto Encyclopedia of Genes and Genomes indicated the highest number of genes involved in metabolism. The presence of carbohydrate metabolism genes and enzymes was used to infer organic pollutions from sewage and agricultural runoffs. Similarly, the presence of xylene and nutrotoluene degradation genes and enzyme was used to infer industrial pollution into the lake. Drug metabolism genes lend credence to the possibility of pharmaceutical pollutants in water. Taken together, there is a clear indication of massive pollution. In addition, carbohydrate-active enzymes were the most abundant and included genes in glycoside hydrolases. Shotgun metagenomic analyses conveyed an understanding of the microbial communities of the massively polluted aquatic ecosystem of Winam Gulf, Lake Vicoria, Kenya. The current study documents the presence of multiclass pollutants in Lake Victoria and reveals information that might be useful for a potential bioremediation strategy using the native microbial communities.

Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring

Freshwater ecosystems have been experiencing various forms of threats, mainly since the last century. The severity of this adverse scenario presents unprecedented challenges to human health, water supply, agriculture, forestry, ecological systems, and biodiversity, among other areas. Despite the progress made in various biomonitoring techniques tailored to specific countries and biotic communities, significant constraints exist, particularly in assessing and quantifying biodiversity and its interplay with detrimental factors. Incorporating modern techniques into biomonitoring methodologies presents a challenging topic with multiple perspectives and assertions. This review aims to present a comprehensive overview of the contemporary advancements in freshwater biomonitoring, specifically by utilizing omics methodologies such as genomics, metagenomics, transcriptomics, proteomics, metabolomics, and multi-omics. The present study aims to elucidate the rationale behind the imperative need for modernization in this field. This will be achieved by presenting case studies, examining the diverse range of organisms that have been studied, and evaluating the potential benefits and drawbacks associated with the utilization of these methodologies. The utilization of advanced high-throughput bioinformatics techniques represents a sophisticated approach that necessitates a significant departure from the conventional practices of contemporary freshwater biomonitoring. The significant contributions of omics techniques in the context of biological quality elements (BQEs) and their interpretations in ecological problems are crucial for biomonitoring programs. Such contributions are primarily attributed to the previously overlooked identification of interactions between different levels of biological organization and their responses, isolated and combined, to specific critical conditions.

Functional threshold responses of benthic macroinvertebrates to environmental stressors in reservoirs

Reservoirs are aquatic ecosystems created by humans to supply water needs. They can impair aquatic diversity due to the lack of connectivity, reduced water volume, and pressures exerted by surrounding human activities. These changes are expected to produce abrupt fluctuations in the reservoirs' environment, thus influencing the structure and functioning of aquatic communities. Therefore, this study aimed to understand the impact of a range of environmental stressors in reservoirs on benthic macroinvertebrates by analyzing their functional threshold response. Biological data were collected in six reservoirs from the semi-arid region of Northeast Brazil, as case study. A total of 37.874 benthic macroinvertebrates belonging to 35 taxa were collected. Nevertheless, almost 90% of this abundance belonged to three species alone, considered generalists, with multivoltine reproduction and from the gatherer-collectors feeding group. Increases in environmental stressors such as salinity, nitrate, ammonia, and dissolved solids led to the selection of macroinvertebrates with specific traits (e.g., protected body, gill respiration, and large body size). These functional traits showed differences in their threshold response depending on the stressors and are indicators of the effects of these stressors on the reservoirs. Some of the potential sensitive traits (with a negative threshold response to the stressor) could also associate with other stressors, demonstrating that tolerance of benthic macroinvertebrates is defined by a set of functional characteristics. Overall, the increase in stressor' gradients selected functionally tolerant organisms with high resistance capacity, but these were represented by dominant species. This resulted in low diversity in the reservoirs, which may compromise ecosystem functioning, and raises concerns about adequate management of the systems.

Macroinvertebrate diversity and ecosystem functioning across the eutrophication gradients of the middle and lower reaches of Yangtze River lakes (China)

Biodiversity, which strengthens ecosystem stability, ecosystem function, and ecosystem services, is threatened by anthropogenic perturbation and climate change worldwide. However, despite the study of the role of biodiversity in multiple facets of freshwater ecosystems, the linkages between macroinvertebrates diversity and ecosystem functioning have not yet been well-assessed in eutrophication gradients of lowland river-floodplain systems. In this study, we have examined the relationship between macroinvertebrates diversity (species diversity, functional diversity, phylogenetic diversity) and macroinvertebrates biomass across the three typically featured eutrophication gradients: "MACROPHYTE," "TRANSITION," and "PHYTOPLANKTON," of floodplain lakes in the middle and lower reaches of the Yangtze River (China). Our results suggest that macroinvertebrates diversity in three different lacustrine conditions, biomass, and the relationship between diversity and biomass varied along eutrophication gradients. Functional richness and variance (divergence in taxon community) were the two important macroinvertebrate diversity indices, which accounted for the largest amount of variation in the biomass (63% in PHYTOPLANKTON lakes and 57% in MACROPHYTE lakes, respectively). We also found that the macrophyte coverage is more important than the relative abundance in maintaining the macroinvertebrates diversity and biomass in lowland Yangtze floodplain lake systems, while the relative abundance of macrophyte would change the BEF relationship. Our results demonstrate the functional performance of Yangtze River lakes, which would change with increased nutrient loading and decreased macrophyte coverage and would highlight the significance of the restoration of macrophytes to reduce nutrient loads.

Geology Can Drive the Diversity-Ecosystem Functioning Relationship in River Benthic Diatoms by Selecting for Species Functional Traits

The biodiversity-ecosystem functioning (BEF) relationship has been studied extensively for the past 30 years, mainly in terrestrial plant ecosystems using experimental approaches. Field studies in aquatic systems are scarce, and considering primary producers, they mainly focus on phytoplankton assemblages, whereas benthic diatoms in rivers are considerably understudied in this regard. We performed a field study across nine rivers in Greece, and we coupled the observed field results with model simulations. We tested the hypothesis that the diversity-biomass (as a surrogate of ecosystem functioning) relationship in benthic diatoms would be affected by abiotic factors and would be time-dependent due to the highly dynamic nature of rivers. Indeed, geology played an important role in the form of the BEF relationship that was positive in siliceous and absent in calcareous substrates. Geology was responsible for nutrient concentrations, which, in turn, were responsible for the dominance of specific functional traits. Furthermore, model simulations showed the time dependence of the BEF form, as less mature assemblages tend to present a positive BEF. This was the first large-scale field study on the BEF relationship of benthic diatom assemblages, offering useful insights into the function and diversity of these overlooked ecosystems and assemblages.

Environmental DNA metabarcoding reveals the impacts of anthropogenic pollution on multitrophic aquatic communities across an urban river of western China

Anthropogenic activities are intensively affecting the structure and function of biological communities in river ecosystems. The effects of anthropogenic pollution on single-trophic community have been widely explored, but their effects on the structures and co-occurrence patterns of multitrophic communities remain largely unknown. In this study, we collected 13 water samples from the Neijiang River in Chengdu City of China, and identified totally 2352 bacterial, 207 algal, 204 macroinvertebrate, and 33 fish species based on the eDNA metabarcoding to systematically investigate the responses of multitrophic communities to environmental stressors. We observed significant variations in bacterial, algal, and macroinvertebrate community structures (except fish) with the pollution levels in the river. Network analyses indicated a more intensive interspecific co-occurrence pattern at high pollution level. Although taxonomic diversity of the multitrophic communities varied insignificantly, phylogenetic diversities of fish and algae showed significantly positive and negative associations with the pollution levels, respectively. We demonstrated the primary role of environmental filtering in driving the structures of bacteria, algae, and macroinvertebrates, while the fish was more controlled by dispersal limitation. Nitrogen was identified as the most important factor impacting the multitrophic community, where bacterial composition was mostly associated with NO₃^--N, algal spatial differentiation with TN, and macroinvertebrate and fish with NH₄⁺-N. Further partial least-squares path model confirmed more important effect of environmental variables on the relative abundance of bacteria and algae, while macroinvertebrate and fish communities were directly driven by the algae-mediated pathway in the food web. Our study highlighted the necessity of integrated consideration of multitrophic biodiversity for riverine pollution management, and emphasized the importance of controlling nitrogen inputs targeting a healthy ecosystem.

Drought and nutrient pollution produce multiple interactive effects in stream ecosystems

Drought and nutrient pollution can affect the dynamics of stream ecosystems in diverse ways. While the individual effects of both stressors are broadly examined in the literature, we still know relatively little about if and how these stressors interact. Here, we performed a mesocosm experiment that explores the compounded effects of seasonal drought via water withdrawals and nutrient pollution (1.0 mg/L of N and 0.1 mg/L of P) on a subset of Ozark stream community fauna and ecosystem processes. We observed biological responses to individual stressors as well as both synergistic and antagonistic stressor interactions. We found that drying negatively affected periphyton assemblages, macroinvertebrate colonization, and leaf litter decomposition in shallow habitats. However, in deep habitats, drought-based increases in fish density caused trophic cascades that released algal communities from grazing pressures; while nutrient enrichment caused bottom-up cascades that influenced periphyton variables and crayfish growth rates. Finally, the combined effects of drought and nutrient enrichment interacted antagonistically to increase survival in longear sunfish; and stressors acted synergistically on grazers causing a trophic cascade that increased periphyton variables. Because stressors can directly and indirectly impact biota—and that the same stressor pairing can act differentially on various portions of the community simultaneously—our broad understanding of individual stressors might not adequately inform our knowledge of multi-stressor systems.

Nitrogen cycling processes and the role of multi-trophic microbiota in dam-induced river-reservoir systems

The nitrogen (N) cycle is one of the most important nutrient cycles in river systems, and it plays an important role in maintaining biogeochemical balance and global climate stability. One of the main ways that humans have altered riverine ecosystems is through the construction of hydropower dams, which have major effects on biogeochemical cycles. Most previous studies examining the effects of damming on N cycling have focused on the whole budget or flux along rivers, and the role of river as N sources or sinks at the global or catchment scale. However, so far there is still lack of comprehensive and systematic summarize on N cycling and the controlling mechanisms in reservoirs affected by dam impoundment. In this review, we firstly summarize N cycling processes along the longitudinal riverine-transition-lacustrine gradient and the vertically stratified epilimnion-thermocline-hypolimnion gradient. Specifically, we highlight the direct and indirect roles of multi-trophic microbiota and their interactions in N cycling and discuss the main factors controlling these biotic processes. In addition, future research directions and challenges in incorporating multi-trophic levels in bioassessment, environmental flow design, as well as reservoir regulation and restoration are summarized. This review will aid future studies of N fluxes along dammed rivers and provide an essential reference for reservoir management to meet ecological needs.

Hydrological, Environmental and Taxonomical Heterogeneity during the Transition from Drying to Flowing Conditions in a Mediterranean Intermittent River

Simple Summary

In recent decades, the riverine ecosystems have been considered to evaluate the aquatic biological diversity, hydrological variations, and ecosystem services. However, climatic change scenarios and anthropogenic interventions are expected to shift from perennial to intermittent rivers with possible repercussion on aquatic biodiversity and human well-being. Our study identified a significant reduction in the Mediterranean intermittent river streamflow with an increase of zero flow days in the last decades. Furthermore, the aquatic invertebrates showed variations during the transition from drying to rewetting with a significantly changing species adapted to the flowing conditions (rheophilic taxa) to non-flowing water. The importance of the disconnected pools as refuges during the dry condition was recognised to protect some endemic species and contribute to the recolonisation after the rewetting events. Include these important aquatic ecosystems in management and conservancy policies is a challenge that will contribute to preserving the freshwater resources and the biological diversity for our future generations.

Abstract

Intermittent rivers and ephemeral streams (IRES) are increasingly studied because of their often-unique aquatic and terrestrial biodiversity, biogeochemical processes and associated ecosystem services. This study is the first to examine the hydrological, physicochemical and taxonomic variability during the dry-wet transition of an intermittent river in the Chilean Mediterranean Zone. Based on 30-years of river monitoring data and the TREHS tool, the hydrology of the river was characterised. Overall, the river shows a significant reduction in streamflow (−0.031 m³/s per year) and a substantial increase of zero flow days (+3.5 days per year). During the transition of hydrological states, variations were observed in the environmental conditions and invertebrate communities. During the drying phase, abundance, richness, and diversity were highest, while species turn-over was highest during base flow conditions. The disconnected pools and the flow resumption phases were characterised by high proportions of lentic taxa and non-insects, such as the endemic species of bivalves, gastropods, and crustaceans, highlighting the relevance of disconnected pools as refuges. Future climatic change scenarios are expected to impact further the hydrology of IRES, which could result in the loss of biodiversity. Biomonitoring and conservation programmes should acknowledge these important ecosystems.

Hydrological intermittency drives diversity decline and functional homogenization in benthic diatom communities

Over the last decades, the combined effects of global climate changes and severe land use modifications have been exacerbating river hydrological alterations and habitat fragmentation in many Mediterranean rivers. This trend is predicted to intensify, with expected significant impacts on taxonomic and functional diversity of benthic communities in the next future. By comparing perennial and intermittent reaches, the present research aims at investigating the role of flow intermittency, driven by the combined effects of climatic variables and land use changes, on benthic diatom communities in Mediterranean streams (NW Italy), by analysing data collected over 11 years. In order to avoid potential confounding effects related to water quality, sites characterized by "poor" or "bad" water quality were excluded a priori. We observed significant differences between permanent and intermittent sections in terms of both climatic variables and land use: higher temperatures and lower precipitations, coupled with an extensive anthropic land use, intensify the natural flow intermittency in intermittent sites. This led to a significant decline in diatom species diversity, at both local and regional scales, and to changes to life history traits. In particular, communities of intermittent reaches were taxonomically and functionally different and less heterogeneous than assemblages characterizing perennial ones, showing higher percentages of small, mainly stalked and pioneer taxa belonging to the low profile guild. Conversely taxa colonizing permanent reaches were bigger, belonging to the high profile guild and able to produce colonies, thus indicating high environmental stability. Our results highlighted how hydrological alterations are profoundly threatening Mediterranean streams and the diatom communities inhabiting them, therefore representing an important benchmark in view of the improvement of biological indices for the assessment of intermittent rivers.

How diatom-, invertebrate- and fish-based diagnostic tools can support the ecological assessment of rivers in a multi-pressure context: Temporal trends over the past two decades in France

The degradation of aquatic ecosystems, induced by worldwide intensification in the use of both land and aquatic resources, has highlighted the critical need for innovative methods allowing an objective quantification and ranking of anthropogenic pressure effects on aquatic organisms. Such diagnostic tools have a great potential for defining robust management responses to anthropogenic pressures. Our objective was to explore how the outputs of three diagnostic tools (based on benthic diatoms, macroinvertebrates and fishes) could be combined to (i) disentangle the temporal effects of multiple pressures over two decades and (ii) provide policy-relevant information for stream managers and decision makers. The diagnostic tools estimated, using taxonomy- and trait-based metrics, the impairment probabilities of biotic assemblages over time by different pressure categories, describing the alteration of water quality, hydromorphology and land use related to anthropogenic activities, in French streams (number of sites = 312). The main result shows that a large proportion of the time series exhibited no significant temporal patterns over the two decades (61.5% to 87.8%, depending on the used tests). Among time series exhibiting significant change, positive trends in impairment probabilities (i.e., degradation) were less frequent than negative ones, indicating a modest improvement in water quality at national scale over the study period. However, trends can be substantially different according to hydroecoregion and pressure category. The three biological compartments displayed convergent temporal responses according to the pressure category and regional context (e.g., lowland plains vs. mountains, pristine vs. agricultural regions). Altogether, this study proposes a unifying approach to integrate a vast amount of information in a single ecological diagnosis using an unparalleled database on natural and anthropized environments. Strengthening the synthesis of biological information provided by various biological compartments should be a priority before implementing evidence-based sustainable conservation and restoration actions.

Water-Sediment Physicochemical Dynamics in a Large Reservoir in the Mediterranean Region under Multiple Stressors

Nowadays, the Mediterranean freshwater systems face the threat of water scarcity, along with multiple other stressors (e.g., organic and inorganic contamination, geomorphological alterations, invasive species), leading to the impairment of their ecosystem services. All these stressors have been speeding up, due to climate variability and land cover/land use changes, turning them into a big challenge for the water management plans. The present study analyses the physicochemical and phytoplankton biomass (chlorophyll-a) dynamics of a large reservoir, in the Mediterranean region (Alqueva reservoir, Southern Portugal), under diverse meteorological conditions and land cover/land use real scenarios (2017 and 2018). The most important stressors were identified and the necessary tools and information for a more effective management plan were provided. Changes in these parameters were further related to the observed variations in the meteorological conditions and in the land cover/land use. The increase in nutrients and ions in the water column, and of potentially toxic metals in the sediment, were more obvious in periods of severe drought. Further, the enhancement of nutrients concentrations, potentially caused by the intensification of agricultural activities, may indicate an increased risk of water eutrophication. The results highlight that a holistic approach is essential for a better water resources management strategy.

Benthic Diatoms in River Biomonitoring—Present and Future Perspectives within the Water Framework Directive

The European Water Framework Directive 2000/60/EC (WFD) has been implemented over the past 20 years, using physicochemical, biological and hydromorphological elements to assess the ecological status of surface waters. Benthic diatoms (i.e., phytobenthos) are one of the most common biological quality elements (BQEs) used in surface water monitoring and are particularly successful in detecting eutrophication, organic pollution and acidification. Herein, we reviewed their implementation in river biomonitoring for the purposes of the WFD, highlighting their advantages and disadvantages over other BQEs, and we discuss recent advances that could be applied in future biomonitoring. Until now, phytobenthos have been intercalibrated by the vast majority (26 out of 28) of EU Member States (MS) in 54% of the total water bodies assessed and was the most commonly used BQE after benthic invertebrates (85% of water bodies), followed by fish (53%), macrophytes (27%) and phytoplankton (4%). To meet the WFD demands, numerous taxonomy-based quality indices have been developed among MS, presenting, however, uncertainties possibly related to species biogeography. Recent development of different types of quality indices (trait-based, DNA sequencing and predictive modeling) could provide more accurate results in biomonitoring, but should be validated and intercalibrated among MS before their wide application in water quality assessments.

Combined effects of urban pollution and hydrological stress on ecosystem functions of Mediterranean streams

Urban pollution and hydrological stress are common stressors of stream ecosystems, but their combined effects on ecosystem functioning are still unclear. We measured a set of functional processes and accompanying environmental variables in locations upstream and downstream of urban sewage inputs in 13 streams covering a wide range of water pollution levels and hydrological variability. Sewage inputs seriously impaired stream chemical characteristics and led to complex effects on ecosystem functioning. Biofilm biomass accrual, whole-reach nutrient uptake and metabolism (ecosystem respiration) were generally subsidized, whereas organic matter decomposition and biofilm phosphorus uptake capacity decreased with increasing pollutant concentrations. Hydrological stress affected stream ecosystem functioning but its effect was minor compared to the effects of urban pollution, due to the large inter-site variability of the streams. Changes appeared mainly linked to the concentration of pharmaceutically active compounds, followed by other chemical characteristics and by hydrology. The results point to the need to further improve sewage treatment, especially as climate change will stress riverine organisms and reduce the dilution capacity of the receiving streams.

Short-period hydrological regimes override physico-chemical variables in shaping stream diatom traits, biomass and biofilm community functions

Despite increasing interest in hydrological effects on riverine ecosystems, few studies have documented the impact of hydrology on biofilm community functions, and those existing have typically focused on annual-based hydrological indices. In this study, we conducted monthly samplings during a year in five lowland streams with different flow regimes and investigated the impacts of hydrological conditions and physico-chemical variables on the trait composition of diatoms growing on artificial substrates, biomass (chlorophyll a and ash free dry weight), and biofilm community functions (biochemical processes, i.e., biofilm metabolism and nutrient uptake rates measured in the laboratory). Instead of the commonly used annual-based hydrological indices, we calculated indices for shorter periods (14 and ~28 days) of the hydrological regimes. Results of species-based variation partitioning showed that short-period hydrological indices (10.10 ± 7.18%) contributed more to explain species distribution than physico-chemical variables (5.90 ± 3.83%), indicating the dominant role of hydrology in structuring the diatom community. Specifically, we found different response patterns for different guilds and size classes to the hydrological and physico-chemical variables, and our results demonstrated that species tolerating high disturbance may be more appropriate as indicators of environmental disturbance than low-tolerant species. We also found dominant effects of short-period hydrological events on biomass and biofilm community functions. Despite an overall negative effect of high flow events and flow variations on biomass and biofilm community functions, positive effects on function-biomass ratios were also observed, indicating that the effects of flow regimes on biofilm are complex. In conclusion, our study highlights the importance of including short-period hydrological conditions in studies on environmental factors shaping benthic algae. Based on our results, we recommend use of short-period hydrological conditions when investigating the effects of flow regime on biofilm community composition and functions.

Metabolomic, functional, and ecologic responses of the common freshwater fungus Neonectria lugdunensis to mine drainage stress

Metal contamination of watersheds is a global problem. Here, we conducted litter decomposition studies with Neonectria lugdunensis, a cosmopolitan aquatic fungus. Fungal isolates from four reference (non-impacted) and six metal-contaminated streams (due to mine drainage) were exposed to mine drainage and reference stream waters in Central Portugal. Impact of mine drainage waters on N. lugdunensis hyphae was investigated by performing metabolomic profiling of 200 lipids and 25 amino acids (AA) with ultra-high performance liquid chromatography-mass spectrometry. In parallel, functional response of N. lugdunensis isolates was assessed through expression profiles of a functional gene, cellobiohydrolase I (CbhI). Ecological performance via leaf mass loss was also determined. Exposure to mine drainage waters altered the concentration of numerous AA and lipids. Most strikingly, a gradual increase in the concentration of the triacylglycerols (TAG) with shorter acyl chains and lesser unsaturation was observed after the exposure to mine drainage waters. In addition, the changes in the concentration of numerous TAG, lysophosphatidylcholines, and AA were more significant in the isolates from the metal-contaminated streams after exposure to mine drainage water. CbhI gene of the isolates from reference streams was down-regulated by metal stress, while those from metal-contaminated streams remained unaffected. Finally, leaf mass loss was influenced by both exposure to mine drainage waters and the origin of isolates. Overall, our study demonstrates unique functional signatures displayed by fungi under metal stress and the relevant role that fungal AA and lipids play to cope with metal toxicity.

Combined effects of benzophenone-3 and temperature on gene expression and enzymatic activity in the aquatic larvae Chironomus riparius

Climate change and pollution are two of the main environmental problems living organisms currently face. Temperature can modify a toxicant's effects and the organism's response to it. Global warming is expected to increase the temperature of freshwater ecosystems. In this work, we analyzed the effect of a mild temperature increase on the acute response of the aquatic larvae Chironomus riparius to the ultraviolet filter benzophenone-3 (BP3). This substance is commonly used in sunscreens and other commercial products and can reach the environment in different ways. We exposed larvae to BP3 at 18.5 or 23 °C for 8 or 24 h and analyzed the acute response at the molecular level. By quantitative real-time polymerase chain reaction (q-PCR), we studied altered messenger RNA (mRNA) levels of genes related to the endocrine system (EcR, InR and Met), detoxification mechanisms (Cyp4d2, Cyp6b7, GST d6, GST o1 and MRP-1) and stress response (Hsp22, Hsp27, Hsp70, HYOU and Gp93). Moreover, enzyme activity was evaluated, with a focus on glutathione-S-transferase (GST), phenoloxidase (PO) and acetylcholinesterase (AChE). Results showed that temperature affected the acute response of this organism by modifying the expression of EcR, Cyp6b7, GST d6, GST o1, MRP-1, Hsp22, Hsp27 and Hsp70 genes. These results suggest that even mild temperature change can affect the response of this organism to BP3 influencing short-term progress of the population. Although longer exposures are required to determine the ability of C. riparius to manage the pollutants in this novel environmental conditions, in order to know the possible mechanisms of detoxification or adaptation that may develop. This research represents a first step in the analysis of multi-stress response in this animal, and opens new possibilities in the toxicity evaluation of this organism in line with the real scenario that organisms face today.

Drivers of water pollution and evaluating its ecological stress with special reference to macrovertebrates (fish community structure): a case of Churni River, India

The focus of this study is to measure ecological stress of Churni River based on the estimates of dissolved oxygen (DO), pH, biological oxygen demand (BOD), chemical oxygen demand (COD), nutrients imbalances of dissolved inorganic nitrogen or DIN (NO₃^- N and NO₂^- N) and dissolved inorganic phosphate or DIP (PO₄^3-). The present water quality measured in terms of overall index of pollution (OIP), eutrophication index (EI), organic pollution (OPI) and water pollution indexes for ecological status (WPI) portrays that the river is polluted having a high concentration of BOD, COD, nutrients (DIP and DIN) and a very low concentration of DO. Fish community structure taken as most sensitive indicator of ecological stress of water pollution depicts that out of 44 species, 28 fish species (63.63%) comprising 20.0% planktivore (PL), 9.09% benthic feeder (BE), 18.18% omnivorous (OM) and 15.90% carnivorous (CA) at Majhdia and 21 fish species (47.72%) comprising 18.18% PL, 4.59% BE, 13.63% OM and 11.36% CA at Ranaghat have been disappeared. The present investigation has found that anthropogenic interventions like disposal of industrial effluents and agricultural run-off from on-bed and off bed land use are the main drivers of the pollution. Furthermore, natural forcing in the form of neotectonic movements and monsoon regimes has intensified the problem.

Acute and sub-chronic toxicity bioassays of Olive Mill Wastewater on the Eastern mosquitofish Gambusia holbrooki

Olive oil production generates large volumes of wastewaters mostly in peri-Mediterranean countries with adverse impacts on the biota of the receiving aquatic systems. Few studies have however documented its toxicity on aquatic species, with an almost total lack of relative studies on fish. We assessed the acute and sub-chronic OMW toxicity, as well as the acute and sub-chronic behavioural, morphological and biochemical effects of OMW exposure on the mosquitofish Gambusia holbrooki. LC₅₀ values of the acute bioassays ranged from 7.31% (24 h) to 6.38% (96 h). Behavioural symptoms of toxicity included hypoactivity and a shift away from the water surface, coupled with a range of morphological alterations, such as skin damage, excessive mucus secretion, hemorrhages, fin rot and exophhalmia, with indications also of gill swelling and anemia. Biochemical assays showed that OMW toxicity resulted in induction of catalase (CAT) and inhibition of acetylcholinesterase (AChE) activities. The implications of our results at the level of environmental policy for the sustainable management of the olive mill industry, i.e. the effective restriction of untreated OMW disposal of in adjacent waterways, as well as the implementation of new technologies that reduce their impact (detoxification and/or revalorization of its residues) are discussed.

Shifting of phytoplankton assemblages in a regulated Chinese river basin after streamflow and water quality changes

Phytoplankton is critical to river ecosystems. These organisms are sensitive to streamflow and water quality changes and, therefore, used to determine stability of river ecosystems, especially in regulated rivers. However, exactly how such disturbances alter spatial distribution of phytoplankton remains unclear, particularly during different seasons. A thorough understanding of these mechanisms is required to better analyze impact of environmental factors on regulated rivers. Given this, phytoplankton communities, streamflow, and water quality factors were assessed in areas sampled four times from 2015 to 2016 in upper and middle Huai River Basin. Biodiversity indices, as well as cluster and rank analyses, were used to (1) determine phytoplankton composition and distribution and (2) clarify impacts of key streamflow and water quality factors on such communities. It was found phytoplankton composition deteriorated over time, with phyla number decreasing from six to three. Moreover, proportion of Bacillariophyta increased from 51.83% to 68.13%. Phytoplankton in three regions, upstream region (Shannon-Wiener index 1.39-2.95), midstream region (0.70-4.55), and downstream region (0.22 to 2.97), were spatially clustered. The most impact factors impacting variation in composition and distribution were water quality factors and then hydrological factors. Of these, the most important factors in wet seasons were total nitrogen and maximum runoff, while ammonia nitrogen and low flow discharge were the most important factors during dry seasons. Streamflow and water quality contributed the most in midstream region, which was significantly affected by numbers of high and low flow. Contributions of these factors to downstream region were the strongest during dry seasons, which were significantly affected by numbers of low flow. Collectively, these results reveal significant impact of streamflow and water quality factors on phytoplankton deterioration in upper and middle Huai River Basin. Critically, this study provides scientific and technological support for increased biomonitoring and ecohydrological studies in regulated river basins.